PDB Short entry for 1Q70 HEADER IMMUNE SYSTEM 14-AUG-03 1Q70 TITLE HOMOLOGY MODEL OF THE EXTRACELLULAR DOMAIN OF HUMAN MYELIN TITLE 2 OLIGODENDROCYTE GLYCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELIN-OLIGODENDROCYTE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS IMMUNE SYSTEM EXPDTA THEORETICAL MODEL AUTHOR M.F.MESLEH,N.BELMAR,C.W.LU,V.V.KRISHNAN,R.S.MAXWELL, AUTHOR 2 C.P.GENAIN,M.COSMAN REVDAT 1 04-NOV-03 1Q70 0 JRNL AUTH M.F.MESLEH,N.BELMAR,C.W.LU,V.V.KRISHNAN, JRNL AUTH 2 R.S.MAXWELL,C.P.GENAIN,M.COSMAN JRNL TITL MARMOSET FINE B CELL AND T CELL EPITOPE JRNL TITL 2 SPECIFICITIES MAPPED ONTO A HOMOLOGY MODEL OF THE JRNL TITL 3 EXTRACELLULAR DOMAIN OF HUMAN MYELIN JRNL TITL 4 OLIGODENDROCYTE GLYCOPROTEIN JRNL REF NEUROBIOL.DIS. V. 9 160 2002 JRNL REFN US ISSN 0969-9961 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q70 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-2003. REMARK 100 THE RCSB ID CODE IS RCSB019995. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELING USING HOMOLOGY MODULE FROM THE REMARK 220 INSIGHTII PROGRAM (VER 97, ACCERLYS) FOR THE SEQUENCE REMARK 220 ALIGNMENTS, THE DISCOVER_3 MODULE OF HOMOLOGY FOR ENERGY REMARK 220 MINIMIZATION AND THE PROGRAMS PROCHECK (LASKOWSKI ET AL) REMARK 220 , MACROMOLECULAR GEOMETRY (YALE) AND GRASP (COLUMBIA) REMARK 220 FOR ANALYZES AND CHECKS. THE CRYSTAL STRUCTURE OF MYELIN REMARK 220 P0 (PDB ACCESS CODE 1NEU) WAS USED AS THE TEMPLATE REMARK 220 STRUCTURE. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 NH1 NH2 REMARK 470 ARG A 9 NH1 NH2 REMARK 470 ARG A 13 NH1 NH2 REMARK 470 ARG A 25 NH1 NH2 REMARK 470 TRP A 39 CH2 REMARK 470 TYR A 40 OH REMARK 470 ARG A 41 NH1 NH2 REMARK 470 ARG A 46 NH1 NH2 REMARK 470 TYR A 51 OH REMARK 470 ARG A 52 NH1 NH2 REMARK 470 TYR A 65 OH REMARK 470 ARG A 66 NH1 NH2 REMARK 470 ARG A 68 NH1 NH2 REMARK 470 ARG A 84 NH1 NH2 REMARK 470 ARG A 86 NH1 NH2 REMARK 470 ARG A 89 NH1 NH2 REMARK 470 ARG A 101 NH1 NH2 REMARK 470 TYR A 105 OH REMARK 470 TYR A 120 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 12 126.54 72.62 REMARK 500 ASN A 53 -70.33 79.93 REMARK 500 GLN A 61 -70.70 78.77 REMARK 500 VAL A 88 -51.65 87.46 REMARK 500 ARG A 89 -119.18 65.97 REMARK 500 SER A 91 -97.24 58.47 REMARK 500 ASP A 92 -112.62 143.40 REMARK 500 TYR A 105 131.51 70.46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 3 ARG A 4 -148.72 REMARK 500 GLU A 36 VAL A 37 147.15 REMARK 500 GLY A 54 LYS A 55 -137.44 REMARK 500 GLN A 57 ASP A 58 149.38 REMARK 500 PHE A 100 ARG A 101 -149.05 DBREF 1Q70 A 2 120 UNP Q92892 MOG_HUMAN 31 149 SEQRES 1 A 119 GLN PHE ARG VAL ILE GLY PRO ARG HIS PRO ILE ARG ALA SEQRES 2 A 119 LEU VAL GLY ASP GLU VAL GLU LEU PRO CYS ARG ILE SER SEQRES 3 A 119 PRO GLY LYS ASN ALA THR GLY MET GLU VAL GLY TRP TYR SEQRES 4 A 119 ARG PRO PRO PHE SER ARG VAL VAL HIS LEU TYR ARG ASN SEQRES 5 A 119 GLY LYS ASP GLN ASP GLY ASP GLN ALA PRO GLU TYR ARG SEQRES 6 A 119 GLY ARG THR GLU LEU LEU LYS ASP ALA ILE GLY GLU GLY SEQRES 7 A 119 LYS VAL THR LEU ARG ILE ARG ASN VAL ARG PHE SER ASP SEQRES 8 A 119 GLU GLY GLY PHE THR CYS PHE PHE ARG ASP HIS SER TYR SEQRES 9 A 119 GLN GLU GLU ALA ALA MET GLU LEU LYS VAL GLU ASP PRO SEQRES 10 A 119 PHE TYR SHEET 1 A 2 ILE A 6 GLY A 7 0 SHEET 2 A 2 ARG A 25 ILE A 26 -1 O ARG A 25 N GLY A 7 SHEET 1 B 2 ARG A 13 LEU A 15 0 SHEET 2 B 2 LYS A 114 GLU A 116 1 O LYS A 114 N ALA A 14 SHEET 1 C 3 GLU A 21 LEU A 22 0 SHEET 2 C 3 LEU A 83 ILE A 85 -1 O LEU A 83 N LEU A 22 SHEET 3 C 3 THR A 69 LEU A 71 -1 N GLU A 70 O ARG A 84 SHEET 1 D 4 VAL A 47 TYR A 51 0 SHEET 2 D 4 VAL A 37 TYR A 40 -1 N TRP A 39 O HIS A 49 SHEET 3 D 4 PHE A 96 PHE A 99 -1 O THR A 97 N TYR A 40 SHEET 4 D 4 ALA A 109 MET A 111 -1 O ALA A 109 N CYS A 98 SSBOND 1 CYS A 24 CYS A 98 CISPEP 1 PHE A 119 TYR A 120 0 -4.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000