PDB Short entry for 1QFK HEADER HYDROLASE/HYDROLASE INHIBITOR 12-APR-99 1QFK TITLE STRUCTURE OF HUMAN FACTOR VIIA AND ITS IMPLICATIONS FOR THE TRIGGERING TITLE 2 OF BLOOD COAGULATION CAVEAT 1QFK FUC L 160 HAS WRONG CHIRALITY AT ATOM C1 0Z6 H 1 HAS WRONG CAVEAT 2 1QFK CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VIIA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: UNP RESIDUES 109-212; COMPND 5 SYNONYM: FVIIA; COMPND 6 EC: 3.4.21.21; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COAGULATION FACTOR VIIA HEAVY CHAIN; COMPND 10 CHAIN: H; COMPND 11 FRAGMENT: UNP RESIDUES 213-466; COMPND 12 SYNONYM: FVIIA; COMPND 13 EC: 3.4.21.21; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: GOLDEN HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BHK570; SOURCE 10 EXPRESSION_SYSTEM_COLLECTION: ATCC CRL 1632; SOURCE 11 EXPRESSION_SYSTEM_ORGANELLE: NUCLEUS; SOURCE 12 EXPRESSION_SYSTEM_CELLULAR_LOCATION: SECRETED; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: ZEM219B; SOURCE 15 EXPRESSION_SYSTEM_GENE: FACTOR VII; SOURCE 16 MOL_ID: 2; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 TISSUE: BLOOD; SOURCE 21 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: GOLDEN HAMSTER; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: BHK570; SOURCE 25 EXPRESSION_SYSTEM_COLLECTION: ATCC CRL 1632; SOURCE 26 EXPRESSION_SYSTEM_ORGANELLE: NUCLEUS; SOURCE 27 EXPRESSION_SYSTEM_CELLULAR_LOCATION: SECRETED; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: ZEM219B; SOURCE 30 EXPRESSION_SYSTEM_GENE: FACTOR VII KEYWDS BLOOD COAGULATION, SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,A.M.BRZOZOWSKI,S.M.ROBERTS,O.H.OLSEN,E.PERSSON REVDAT 6 16-AUG-23 1QFK 1 HETSYN REVDAT 5 29-JUL-20 1QFK 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1QFK 1 VERSN REVDAT 3 24-FEB-09 1QFK 1 VERSN REVDAT 2 01-APR-03 1QFK 1 JRNL REVDAT 1 01-AUG-99 1QFK 0 JRNL AUTH A.C.PIKE,A.M.BRZOZOWSKI,S.M.ROBERTS,O.H.OLSEN,E.PERSSON JRNL TITL STRUCTURE OF HUMAN FACTOR VIIA AND ITS IMPLICATIONS FOR THE JRNL TITL 2 TRIGGERING OF BLOOD COAGULATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 8925 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10430872 JRNL DOI 10.1073/PNAS.96.16.8925 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 16085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.570 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.045 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.048 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.013 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.158 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.206 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.278 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.100 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 20.200; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 18.200; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.683 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.972 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.588 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.649 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 XPLOR BULK SOLVENT CORRECTION USED INSTEAD OF REFMAC DEFAULT REMARK 3 CORRECTION REMARK 3 REMARK 3 THE MAINCHAIN OF RESIDUES L104-L111 EXHIBITS STATIC REMARK 3 DISORDER AND HAS BEEN MODELED IN TWO ALTERNATE REMARK 3 CONFORMATIONS REMARK 4 REMARK 4 1QFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 100.00 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8342 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NACL, 10MM CACL2, 3.5-3.7M SODIUM REMARK 280 FORMATE IN 100MM TRIS PH 8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.50000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.50000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.50000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN L 145 REMARK 465 ALA L 146 REMARK 465 SER L 147 REMARK 465 LYS L 148 REMARK 465 PRO L 149 REMARK 465 GLN L 150 REMARK 465 GLY L 151 REMARK 465 ARG L 152 REMARK 465 ARG H 315 REMARK 465 LYS H 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 62 CG CD CE NZ REMARK 470 GLU L 77 CG CD OE1 OE2 REMARK 470 LYS L 85 CD CE NZ REMARK 470 LYS H 199 CB CG CD CE NZ REMARK 470 ARG H 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 344 O2 0Z6 H 1 2.00 REMARK 500 OG SER H 344 CA2 0Z6 H 1 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER H 344 CB SER H 344 OG 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 102 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP L 104 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 GLY L 107 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG L 110 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG L 113 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG L 113 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS L 127 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 LYS L 137 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ILE L 140 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU H 210 OE1 - CD - OE2 ANGL. DEV. = 11.9 DEGREES REMARK 500 GLU H 210 CG - CD - OE1 ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP H 212 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP H 219 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG H 224 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG H 224 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG H 247 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG H 247 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG H 247 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG H 266 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG H 277 CG - CD - NE ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG H 277 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG H 304 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG H 304 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG H 304 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG H 304 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET H 306 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR H 332 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 HIS H 348 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 TYR H 352 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR H 352 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG H 353 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG H 353 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR H 377 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG H 379 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG H 379 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG H 379 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR H 383 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG H 392 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG H 396 CD - NE - CZ ANGL. DEV. = 19.4 DEGREES REMARK 500 ARG H 396 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG H 402 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO H 406 C - N - CD ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 53 76.65 36.57 REMARK 500 CYS L 55 99.08 -62.66 REMARK 500 LEU L 65 -137.85 61.81 REMARK 500 GLN L 66 42.12 -101.68 REMARK 500 SER L 67 -152.18 -155.94 REMARK 500 ASP L 86 7.65 -61.75 REMARK 500 LEU L 89 52.84 -107.98 REMARK 500 GLN L 100 -104.47 -120.58 REMARK 500 ASP L 104 28.35 -165.28 REMARK 500 ALA L 122 -70.34 -23.19 REMARK 500 VAL L 125 -46.16 -130.12 REMARK 500 CYS H 178 -164.73 -165.29 REMARK 500 SER H 190 -158.54 -154.53 REMARK 500 HIS H 211 -61.98 -157.75 REMARK 500 ASP H 319 34.37 -80.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER L 111 19.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PHE-ARG- REMARK 600 CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO REMARK 600 COVALENT BONDS: 1) A COVALENT BOND TO SER 344 H FORMING A HEMIKETAL REMARK 600 AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 193 H REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 210 OE1 REMARK 620 2 ASP H 212 O 90.2 REMARK 620 3 GLU H 215 O 161.0 72.3 REMARK 620 4 GLU H 220 OE2 116.4 144.5 77.2 REMARK 620 5 HOH H 547 O 77.5 90.9 109.3 116.5 REMARK 620 6 HOH H 561 O 94.8 86.7 77.3 69.0 172.0 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PHENYLALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0Z6 H 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PHE AR7 0QE REMARK 630 DETAILS: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SIGNAL SEQUENCE RESIDUES 1-44 OF MATURE PROTEIN ARE NOT PRESENT REMARK 999 IN EXPRESSION CONSTRUCT, RESIDUES 45-48 ARE DISORDERED IN ELECTRON REMARK 999 DENSITY AND ARE NOT MODELED. DBREF 1QFK L 49 152 UNP P08709 FA7_HUMAN 109 212 DBREF 1QFK H 153 406 UNP P08709 FA7_HUMAN 213 466 SEQRES 1 L 104 GLN CYS ALA SER SER PRO CYS GLN ASN GLY GLY SER CYS SEQRES 2 L 104 LYS ASP GLN LEU GLN SER TYR ILE CYS PHE CYS LEU PRO SEQRES 3 L 104 ALA PHE GLU GLY ARG ASN CYS GLU THR HIS LYS ASP ASP SEQRES 4 L 104 GLN LEU ILE CYS VAL ASN GLU ASN GLY GLY CYS GLU GLN SEQRES 5 L 104 TYR CYS SER ASP HIS THR GLY THR LYS ARG SER CYS ARG SEQRES 6 L 104 CYS HIS GLU GLY TYR SER LEU LEU ALA ASP GLY VAL SER SEQRES 7 L 104 CYS THR PRO THR VAL GLU TYR PRO CYS GLY LYS ILE PRO SEQRES 8 L 104 ILE LEU GLU LYS ARG ASN ALA SER LYS PRO GLN GLY ARG SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO MODRES 1QFK ASN H 322 ASN GLYCOSYLATION SITE MODRES 1QFK SER L 52 SER GLYCOSYLATION SITE MODRES 1QFK SER L 60 SER GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET FUL A 3 10 HET GLC L 153 11 HET FUC L 160 10 HET 0Z6 H 1 34 HET CA H 500 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM 0Z6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0Z6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0Z6 PHENYLALANINAMIDE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN 0Z6 FFRCK FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 FUL C6 H12 O5 FORMUL 4 GLC C6 H12 O6 FORMUL 5 FUC C6 H12 O5 FORMUL 6 0Z6 C25 H36 CL N6 O3 1+ FORMUL 7 CA CA 2+ FORMUL 8 HOH *84(H2 O) HELIX 1 1 CYS L 50 SER L 52 5 3 HELIX 2 2 LYS L 85 ASP L 87 5 3 HELIX 3 3 ASN L 95 GLY L 97 5 3 HELIX 4 4 PRO L 139 GLU L 142 1 4 HELIX 5 5 ALA H 192 PHE H 195 5 4 HELIX 6 6 ARG H 266 ARG H 271 1 6 HELIX 7 7 LEU H 273 PHE H 275 5 3 HELIX 8 8 THR H 307 ASP H 309 5 3 HELIX 9 9 VAL H 380 MET H 391 5 12 SHEET 1 A 2 SER L 60 GLN L 64 0 SHEET 2 A 2 SER L 67 PHE L 71 -1 N PHE L 71 O SER L 60 SHEET 1 B 2 TYR L 118 LEU L 120 0 SHEET 2 B 2 CYS L 127 PRO L 129 -1 N THR L 128 O SER L 119 SHEET 1 C 4 GLN H 221 ARG H 224 0 SHEET 2 C 4 LEU H 204 LEU H 208 -1 N LEU H 208 O GLN H 221 SHEET 3 C 4 GLN H 167 VAL H 172 -1 N LEU H 171 O ILE H 205 SHEET 4 C 4 ALA H 175 THR H 181 -1 N GLY H 180 O VAL H 168 SHEET 1 D 4 TRP H 187 SER H 190 0 SHEET 2 D 4 ALA H 244 LEU H 248 -1 N LEU H 246 O VAL H 188 SHEET 3 D 4 VAL H 225 PRO H 231 -1 N ILE H 229 O LEU H 245 SHEET 4 D 4 LEU H 400 ALA H 403 1 N LEU H 401 O VAL H 228 SHEET 1 E 2 PHE H 278 GLY H 283 0 SHEET 2 E 2 MET H 298 PRO H 303 -1 N VAL H 302 O SER H 279 SHEET 1 F 4 MET H 327 ALA H 330 0 SHEET 2 F 4 GLY H 375 ARG H 379 -1 N TYR H 377 O PHE H 328 SHEET 3 F 4 THR H 355 GLY H 365 -1 N TRP H 364 O VAL H 376 SHEET 4 F 4 PRO H 347 TYR H 352 -1 N TYR H 352 O THR H 355 SSBOND 1 CYS L 50 CYS L 61 1555 1555 2.04 SSBOND 2 CYS L 55 CYS L 70 1555 1555 2.03 SSBOND 3 CYS L 72 CYS L 81 1555 1555 2.06 SSBOND 4 CYS L 91 CYS L 102 1555 1555 2.00 SSBOND 5 CYS L 98 CYS L 112 1555 1555 2.02 SSBOND 6 CYS L 114 CYS L 127 1555 1555 2.00 SSBOND 7 CYS L 135 CYS H 262 1555 1555 2.03 SSBOND 8 CYS H 159 CYS H 164 1555 1555 2.00 SSBOND 9 CYS H 178 CYS H 194 1555 1555 2.04 SSBOND 10 CYS H 310 CYS H 329 1555 1555 2.02 SSBOND 11 CYS H 340 CYS H 368 1555 1555 2.07 LINK OG SER L 52 C1 GLC L 153 1555 1555 1.42 LINK OG SER L 60 C1 FUC L 160 1555 1555 1.42 LINK C3 0Z6 H 1 NE2 HIS H 193 1555 1555 1.50 LINK C2 0Z6 H 1 OG SER H 344 1555 1555 1.52 LINK ND2 ASN H 322 C1 NAG A 1 1555 1555 1.40 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.40 LINK O6 NAG A 1 C1 FUL A 3 1555 1555 1.40 LINK OE1 GLU H 210 CA CA H 500 1555 1555 2.65 LINK O ASP H 212 CA CA H 500 1555 1555 2.80 LINK O GLU H 215 CA CA H 500 1555 1555 2.65 LINK OE2 GLU H 220 CA CA H 500 1555 1555 2.94 LINK CA CA H 500 O HOH H 547 1555 1555 2.78 LINK CA CA H 500 O HOH H 561 1555 1555 2.75 CISPEP 1 PHE H 405 PRO H 406 0 1.38 CRYST1 115.300 115.300 98.000 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010204 0.00000