PDB Short entry for 1QJ0 HEADER HORMONE 18-JUN-99 1QJ0 TITLE HUMAN INSULIN HEXAMERS WITH CHAIN B HIS MUTATED TO TYR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN A CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: B5TYR_T3R3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INSULIN B CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS HORMONE, GLUCOSE METABOLISM, DIABETES, INSULIN MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR L.TANG,J.L.WHITTINGHAM,C.S.VERMA,L.S.D.CAVES,G.G.DODSON REVDAT 5 05-JUL-17 1QJ0 1 REMARK REVDAT 4 03-AUG-11 1QJ0 1 COMPND JRNL REMARK SEQADV REVDAT 4 2 1 HET FORMUL LINK SITE REVDAT 4 3 1 SCALE3 HETATM CONECT MASTER REVDAT 4 4 1 VERSN REVDAT 3 24-FEB-09 1QJ0 1 VERSN REVDAT 2 04-JUL-00 1QJ0 1 JRNL REVDAT 1 22-JUN-99 1QJ0 0 JRNL AUTH L.TANG,J.L.WHITTINGHAM,C.S.VERMA,L.S.D.CAVES,G.G.DODSON JRNL TITL STRUCTURAL CONSEQUENCES OF THE B5 HISTIDINE --> TYROSINE JRNL TITL 2 MUTATION IN HUMAN INSULIN CHARACTERIZED BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY AND CONFORMATIONAL ANALYSIS. JRNL REF BIOCHEMISTRY V. 38 12041 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10508408 JRNL DOI 10.1021/BI990700K REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 3477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1990 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 3477 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.054 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.058 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.021 ; 0.025 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.212 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.205 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.279 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.188 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 5.100 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 20.200; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 15.600; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.300 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.200 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.500 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.400 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING SIDECHAINS HAVE BEEN REMARK 3 ASSIGNED ZERO OCCUPANCIES DUE TO DISORDER: A4, A5, A10, B3, B4, REMARK 3 B21, B29, C14, D3, D4 THE FOLLOWING CHAIN TERMINAL RESIDUES HAVE REMARK 3 BEEN ASSIGNED ZERO OCCUPANCIES DUE TO DISORDER: B1-B2, B30, D30 REMARK 3 THE FOLLOWING A CHAIN RESIDUES HAVE BEEN ASSIGNED ZERO OR HALF REMARK 3 OCCUPANCIES DUE TO DISORDER, RESULTING FROM THE B5 HIS TO TYR REMARK 3 MUTATION: A7, A8, A9 REMARK 4 REMARK 4 1QJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1290002839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 289.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.13200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: T3R3 (NATIVE) INSULIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLISATION IN BATCH: 10 MG B5 TYR REMARK 280 INSULIN DISSOLVED IN 2 ML 0.02M HCL. TO THIS ADDED 0.05 ML 0.15M REMARK 280 ZINC ACETATE, 1.0 ML 0.2 M TRI-SODIUM CITRATE, 1.0 ML ACETONE. REMARK 280 PH ADJUSTED TO 6.4-7.1 ., PH 6.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.36537 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.54333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.47000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.36537 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.54333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.47000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.36537 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.54333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.73073 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.08667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.73073 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.08667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.73073 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.08667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS AN INSULIN REMARK 300 DIMER. THREE DIMERS AGGREGATE AROUND TWO ZINC IONS REMARK 300 SITUATED ON A CRYSTALLOGRAPHIC3-FOLD AXIS TO FORM REMARK 300 A HEXAMER.A MEAN DIFFERENCE IN ACCESSIBLE REMARK 300 SURFACE AREA PER THE CHAIN IN THE COMPLEX OF REMARK 300 1325.5 ANGSTROM**2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -307.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN B1001 LIES ON A SPECIAL POSITION. REMARK 375 CL CL B1002 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN D1001 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2003 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2009 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B 1 REMARK 465 THR B 30 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 CYS A 7 REMARK 475 SER A 9 REMARK 475 VAL B 2 REMARK 475 THR D 30 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 4 CD OE1 OE2 REMARK 480 GLN A 5 CB CG CD OE1 NE2 REMARK 480 ILE A 10 CG1 CG2 CD1 REMARK 480 ASN B 3 OD1 ND2 REMARK 480 GLN B 4 CG CD OE1 NE2 REMARK 480 GLU B 21 CB CG CD OE1 OE2 REMARK 480 LYS B 29 C O REMARK 480 TYR C 14 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASN D 3 CG OD1 ND2 REMARK 480 GLN D 4 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 26 O HOH B 2011 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 2010 O HOH D 2010 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 6 C CYS A 7 N -0.212 REMARK 500 GLU B 21 CA GLU B 21 CB -0.311 REMARK 500 LYS B 29 CA LYS B 29 C 0.163 REMARK 500 GLU D 21 CB GLU D 21 CG -0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 4 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 GLN A 5 N - CA - CB ANGL. DEV. = -17.3 DEGREES REMARK 500 ILE A 10 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 VAL B 18 O - C - N ANGL. DEV. = -13.1 DEGREES REMARK 500 GLU B 21 N - CA - CB ANGL. DEV. = 24.8 DEGREES REMARK 500 GLU B 21 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 22 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 22 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 PHE B 25 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 LYS B 29 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 GLU C 17 OE1 - CD - OE2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASN C 18 OD1 - CG - ND2 ANGL. DEV. = 13.8 DEGREES REMARK 500 TYR C 19 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS C 20 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ASN D 3 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 GLU D 13 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 TYR D 16 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 VAL D 18 CA - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 VAL D 18 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 GLY D 20 C - N - CA ANGL. DEV. = -14.6 DEGREES REMARK 500 GLU D 21 CB - CG - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG D 22 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 22 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 -82.88 -79.59 REMARK 500 ASN D 3 69.40 -110.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 5 13.24 REMARK 500 CYS A 6 -10.98 REMARK 500 GLU A 17 -12.83 REMARK 500 TYR A 19 10.92 REMARK 500 GLU B 21 -18.23 REMARK 500 PRO B 28 -10.51 REMARK 500 GLN C 5 11.29 REMARK 500 ILE C 10 -11.82 REMARK 500 CYS C 11 13.49 REMARK 500 LEU D 15 11.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 10 NE2 REMARK 620 2 HIS B 10 NE2 111.7 REMARK 620 3 HIS B 10 NE2 111.7 111.7 REMARK 620 4 CL B1002 CL 107.1 107.1 107.1 REMARK 620 5 CL B1002 CL 107.1 107.1 107.1 0.0 REMARK 620 6 CL B1002 CL 107.1 107.1 107.1 0.0 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 10 NE2 REMARK 620 2 HIS D 10 NE2 110.7 REMARK 620 3 HOH D2009 O 108.3 108.3 REMARK 620 4 HOH D2009 O 108.3 108.3 0.0 REMARK 620 5 HOH D2009 O 108.3 108.3 0.0 0.0 REMARK 620 6 HIS D 10 NE2 110.7 110.7 108.3 108.3 108.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QIZ RELATED DB: PDB REMARK 900 HUMAN INSULIN HEXAMERS WITH CHAIN B HIS MUTATED TO TYR COMPLEXED REMARK 900 WITH RESORCINOL REMARK 900 RELATED ID: 1QIY RELATED DB: PDB REMARK 900 HUMAN INSULIN HEXAMERS WITH CHAIN B HIS MUTATED TO TYR COMPLEXED REMARK 900 WITH PHENOL DBREF 1QJ0 A 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 1QJ0 B 1 30 UNP P01308 INS_HUMAN 25 54 DBREF 1QJ0 C 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 1QJ0 D 1 30 UNP P01308 INS_HUMAN 25 54 SEQADV 1QJ0 TYR B 5 UNP P01308 HIS 29 ENGINEERED MUTATION SEQADV 1QJ0 TYR D 5 UNP P01308 HIS 29 ENGINEERED MUTATION SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 30 PHE VAL ASN GLN TYR LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 30 THR PRO LYS THR SEQRES 1 C 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 C 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 D 30 PHE VAL ASN GLN TYR LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 D 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 D 30 THR PRO LYS THR HET ZN B1001 1 HET CL B1002 1 HET ZN D1001 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CL CL 1- FORMUL 8 HOH *28(H2 O) HELIX 1 1 GLY A 1 THR A 8 1 8 HELIX 2 2 SER A 12 ASN A 18 1 7 HELIX 3 3 ASN B 3 GLY B 20 1 18 HELIX 4 4 GLU B 21 GLY B 23 5 3 HELIX 5 5 GLY C 1 CYS C 7 1 7 HELIX 6 6 SER C 12 GLU C 17 1 6 HELIX 7 7 CYS D 7 GLY D 20 1 14 HELIX 8 8 GLU D 21 GLY D 23 5 3 SHEET 1 A 2 PHE B 24 TYR B 26 0 SHEET 2 A 2 PHE D 24 TYR D 26 -1 O PHE D 24 N TYR B 26 SSBOND 1 CYS A 6 CYS A 11 1555 1555 1.99 SSBOND 2 CYS A 7 CYS B 7 1555 1555 1.94 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.06 SSBOND 4 CYS C 6 CYS C 11 1555 1555 2.02 SSBOND 5 CYS C 7 CYS D 7 1555 1555 2.02 SSBOND 6 CYS C 20 CYS D 19 1555 1555 2.02 LINK ZN ZN B1001 NE2 HIS B 10 1555 1555 2.00 LINK ZN ZN B1001 NE2 HIS B 10 1555 2555 2.00 LINK ZN ZN B1001 NE2 HIS B 10 1555 3555 2.00 LINK ZN ZN B1001 CL CL B1002 1555 1555 2.07 LINK ZN ZN B1001 CL CL B1002 1555 2555 2.07 LINK ZN ZN B1001 CL CL B1002 1555 3555 2.07 LINK ZN ZN D1001 NE2 HIS D 10 1555 1555 2.02 LINK ZN ZN D1001 NE2 HIS D 10 1555 3555 2.02 LINK ZN ZN D1001 O HOH D2009 1555 1555 1.79 LINK ZN ZN D1001 O HOH D2009 1555 2555 1.79 LINK ZN ZN D1001 O HOH D2009 1555 3555 1.79 LINK ZN ZN D1001 NE2 HIS D 10 1555 2555 2.02 SITE 1 AC1 2 HIS B 10 CL B1002 SITE 1 AC2 2 HIS B 10 ZN B1001 SITE 1 AC3 2 HIS D 10 HOH D2009 CRYST1 80.940 80.940 37.630 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012355 0.007133 0.000000 0.00000 SCALE2 0.000000 0.014266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026575 0.00000