PDB Short entry for 1QYT HEADER PROTEIN BINDING 12-SEP-03 1QYT TITLE SOLUTION STRUCTURE OF FRAGMENT (25-35) OF BETA AMYLOID PEPTIDE IN SDS TITLE 2 MICELLAR SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 11-MER PEPTIDE FROM AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS AMYLOID BETA PEPTIDE- KINK STRUCTURE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR A.M.D'URSI,M.R.ARMENANTE,R.GUERRINI,S.SALVADORI,G.SORRENTINO,D.PICONE REVDAT 3 02-MAR-22 1QYT 1 REMARK REVDAT 2 24-FEB-09 1QYT 1 VERSN REVDAT 1 14-DEC-04 1QYT 0 JRNL AUTH A.M.D'URSI,M.R.ARMENANTE,R.GUERRINI,S.SALVADORI, JRNL AUTH 2 G.SORRENTINO,D.PICONE JRNL TITL SOLUTION STRUCTURE OF AMYLOID BETA-PEPTIDE (25-35) IN JRNL TITL 2 DIFFERENT MEDIA JRNL REF J.MED.CHEM. V. 47 4231 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 15293994 JRNL DOI 10.1021/JM040773O REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QYT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 4.15 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM ABETA(25-35) PEPTIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3, SPARKY 3.106, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 27 H ILE A 31 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 27 -49.40 80.88 REMARK 500 2 SER A 26 -80.56 -52.81 REMARK 500 3 SER A 26 -80.82 -92.66 REMARK 500 4 SER A 26 -81.85 -68.50 REMARK 500 5 SER A 26 -81.95 -47.62 REMARK 500 5 ASN A 27 21.74 -147.35 REMARK 500 5 LYS A 28 128.46 -26.51 REMARK 500 5 ILE A 32 24.65 -140.43 REMARK 500 6 SER A 26 -80.30 -99.96 REMARK 500 6 ILE A 32 21.92 -150.46 REMARK 500 7 SER A 26 -79.80 -93.65 REMARK 500 8 SER A 26 -167.77 -54.95 REMARK 500 8 ASN A 27 49.81 -80.92 REMARK 500 8 LYS A 28 128.65 -28.47 REMARK 500 8 ALA A 30 -53.65 -120.41 REMARK 500 9 SER A 26 -82.58 -81.74 REMARK 500 10 SER A 26 -82.22 -66.77 REMARK 500 11 SER A 26 -149.65 -60.25 REMARK 500 12 SER A 26 -82.67 -70.04 REMARK 500 12 ASN A 27 20.71 -148.48 REMARK 500 13 SER A 26 44.33 -87.61 REMARK 500 13 ASN A 27 30.08 39.58 REMARK 500 14 SER A 26 -82.72 -86.85 REMARK 500 14 ASN A 27 20.66 -148.46 REMARK 500 15 SER A 26 -176.25 -54.80 REMARK 500 16 SER A 26 -81.90 -105.77 REMARK 500 17 SER A 26 -81.91 -106.78 REMARK 500 17 ALA A 30 -57.56 -125.16 REMARK 500 18 SER A 26 -81.45 -57.09 REMARK 500 18 ASN A 27 21.69 -151.10 REMARK 500 19 SER A 26 -82.13 -79.96 REMARK 500 19 ASN A 27 22.60 -152.37 REMARK 500 20 SER A 26 -81.33 -56.22 REMARK 500 20 ASN A 27 22.12 -151.88 REMARK 500 21 SER A 26 -82.77 -75.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IYT RELATED DB: PDB REMARK 900 THE PARENT PEPTIDE BETA AMYLOID 1-42 DBREF 1QYT A 25 35 UNP P05067 A4_HUMAN 696 706 SEQRES 1 A 11 GLY SER ASN LYS GLY ALA ILE ILE GLY LEU MET CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000