PDB Short entry for 1R0R HEADER HYDROLASE 22-SEP-03 1R0R TITLE 1.1 ANGSTROM RESOLUTION STRUCTURE OF THE COMPLEX BETWEEN TITLE 2 THE PROTEIN INHIBITOR, OMTKY3, AND THE SERINE PROTEASE, TITLE 3 SUBTILISIN CARLSBERG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN CARLSBERG; COMPND 3 CHAIN: E; COMPND 4 EC: 3.4.21.62; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: OVOMUCOID; COMPND 7 CHAIN: I; COMPND 8 SYNONYM: OMTKY3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 6 ORGANISM_COMMON: TURKEY; SOURCE 7 ORGANISM_TAXID: 9103 KEYWDS HIGH RESOLUTION, SERINE PROTEASE, PROTEIN INHIBITOR, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORN,S.RAMASWAMY,K.P.MURPHY REVDAT 2 24-FEB-09 1R0R 1 VERSN REVDAT 1 11-NOV-03 1R0R 0 JRNL AUTH J.R.HORN,S.RAMASWAMY,K.P.MURPHY JRNL TITL STRUCTURE AND ENERGETICS OF PROTEIN-PROTEIN JRNL TITL 2 INTERACTIONS: THE ROLE OF CONFORMATIONAL JRNL TITL 3 HETEROGENEITY IN OMTKY3 BINDING TO SERINE PROTEASES JRNL REF J.MOL.BIOL. V. 331 497 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12888355 JRNL DOI 10.1016/S0022-2836(03)00783-6 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 107101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2376 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2095 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3244 ; 1.475 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4888 ; 0.751 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 4.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;16.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2710 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 441 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 547 ; 0.243 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2043 ; 0.190 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 305 ; 0.141 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.258 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.103 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.181 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.117 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 1.129 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2580 ; 1.573 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 764 ; 2.383 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 664 ; 3.359 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 275 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7200 20.6000 49.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.0685 T22: 0.0703 REMARK 3 T33: 0.0686 T12: 0.0056 REMARK 3 T13: 0.0061 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4680 L22: 0.2039 REMARK 3 L33: 0.7577 L12: 0.0975 REMARK 3 L13: -0.3818 L23: -0.1650 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.0552 S13: 0.0233 REMARK 3 S21: 0.0285 S22: 0.0151 S23: 0.0134 REMARK 3 S31: -0.0621 S32: -0.0975 S33: -0.0533 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 6 I 56 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3010 -2.9300 44.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0617 REMARK 3 T33: 0.0860 T12: -0.0173 REMARK 3 T13: 0.0116 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.8367 L22: 2.9998 REMARK 3 L33: 0.5679 L12: 0.6765 REMARK 3 L13: -0.2336 L23: 0.0655 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0111 S13: -0.1036 REMARK 3 S21: 0.0199 S22: -0.0447 S23: -0.1961 REMARK 3 S31: 0.0267 S32: 0.0051 S33: 0.0518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1R0R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107101 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.010 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, 0.1 M TRIS, AND 50%(V/V) 2-METHYL-2,4-PENTANEDIOL REMARK 280 (MPD), PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.73800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.73800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.16450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.16450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.73800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.16450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.73800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.16450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.40500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS E 15 CE NZ REMARK 480 ASN E 158 OD1 ND2 REMARK 480 GLN E 275 CG CD OE1 NE2 REMARK 480 ASP I 7 CG OD1 OD2 REMARK 480 GLU I 10 CG CD OE1 OE2 REMARK 480 LYS I 13 CE NZ REMARK 480 ARG I 21 NH1 NH2 REMARK 480 LYS I 29 CD CE NZ REMARK 480 LYS I 34 NZ REMARK 480 LYS I 55 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD LYS I 29 O HOH I 4031 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN E 158 CG ASN E 158 OD1 0.156 REMARK 500 ASN E 158 CG ASN E 158 ND2 -0.184 REMARK 500 GLU I 10 CB GLU I 10 CG 0.298 REMARK 500 ARG I 21 CZ ARG I 21 NH1 0.141 REMARK 500 ARG I 21 CZ ARG I 21 NH2 -0.165 REMARK 500 LYS I 34 CE LYS I 34 NZ 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN E 158 CB - CG - OD1 ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP I 7 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 GLU I 10 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG I 21 NE - CZ - NH1 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG I 21 NE - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 32 -151.70 -166.64 REMARK 500 ALA E 73 16.89 -145.50 REMARK 500 ASN E 77 -154.06 -159.15 REMARK 500 VAL E 81 -161.45 -121.85 REMARK 500 SER E 159 97.10 -163.57 REMARK 500 THR E 213 -157.01 -133.11 REMARK 500 ASP I 7 99.21 -66.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 39 O REMARK 620 2 LEU E 42 O 79.9 REMARK 620 3 ALA E 37 O 87.5 95.3 REMARK 620 4 HOH E4009 O 124.8 70.4 51.9 REMARK 620 5 HOH E4126 O 152.3 117.2 70.2 52.3 REMARK 620 6 HOH E4097 O 86.0 75.0 169.2 126.7 118.4 REMARK 620 7 HOH E4096 O 80.6 147.4 109.7 141.8 91.4 77.8 REMARK 620 8 HOH E4333 O 152.0 78.2 111.7 62.6 55.5 71.6 109.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 41 OD2 REMARK 620 2 GLN E 2 OE1 153.3 REMARK 620 3 ASP E 41 OD1 52.3 153.7 REMARK 620 4 VAL E 81 O 76.9 77.0 125.3 REMARK 620 5 THR E 79 O 87.3 92.3 96.2 101.0 REMARK 620 6 ASN E 77 OD1 127.7 78.0 79.6 154.8 77.8 REMARK 620 7 LEU E 75 O 107.0 77.8 88.1 88.5 164.4 88.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E4286 O REMARK 620 2 SER E 260 O 90.0 REMARK 620 3 LEU E 196 O 64.0 96.8 REMARK 620 4 GLY E 193 O 162.4 102.7 102.0 REMARK 620 5 HOH E4174 O 95.0 86.7 158.6 97.8 REMARK 620 6 ALA E 194 O 88.4 178.1 81.7 78.7 94.3 REMARK 620 7 HOH E4286 O 0.0 90.0 64.0 162.4 95.0 88.4 REMARK 620 8 ALA E 194 O 88.4 178.1 81.7 78.7 94.3 0.0 88.4 REMARK 620 9 HOH E4174 O 95.0 86.7 158.6 97.8 0.0 94.3 95.0 94.3 REMARK 620 10 GLY E 193 O 162.4 102.7 102.0 0.0 97.8 78.7 162.4 REMARK 620 78.7 97.8 REMARK 620 11 LEU E 196 O 64.0 96.8 0.0 102.0 158.6 81.7 64.0 REMARK 620 81.7 158.6 102.0 REMARK 620 12 SER E 260 O 90.0 0.0 96.8 102.7 86.7 178.1 90.0 REMARK 620 178.1 86.7 102.7 96.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 9 10 11 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 171 O REMARK 620 2 HOH E4084 O 84.0 REMARK 620 3 HOH E4021 O 159.1 86.0 REMARK 620 4 VAL E 174 O 91.4 137.9 83.9 REMARK 620 5 ALA E 169 O 91.3 110.7 109.5 111.2 REMARK 620 6 TYR E 171 O 0.0 84.0 159.1 91.4 91.3 REMARK 620 7 HOH E4084 O 84.0 0.0 86.0 137.9 110.7 84.0 REMARK 620 8 HOH E4021 O 159.1 86.0 0.0 83.9 109.5 159.1 86.0 REMARK 620 9 VAL E 174 O 91.4 137.9 83.9 0.0 111.2 91.4 137.9 83.9 REMARK 620 10 ALA E 169 O 91.3 110.7 109.5 111.2 0.0 91.3 110.7 REMARK 620 109.5 111.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 9 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 305 DBREF 1R0R E 1 274 UNP P00780 SUBT_BACLI 2 275 DBREF 1R0R I 6 56 UNP P68390 IOVO_MELGA 135 185 SEQADV 1R0R ASN E 158 UNP P00780 SER 158 CONFLICT SEQADV 1R0R SER E 161 UNP P00780 ASN 161 CONFLICT SEQADV 1R0R PRO E 225 UNP P00780 GLU 225 CONFLICT SEQRES 1 E 274 ALA GLN THR VAL PRO TYR GLY ILE PRO LEU ILE LYS ALA SEQRES 2 E 274 ASP LYS VAL GLN ALA GLN GLY PHE LYS GLY ALA ASN VAL SEQRES 3 E 274 LYS VAL ALA VAL LEU ASP THR GLY ILE GLN ALA SER HIS SEQRES 4 E 274 PRO ASP LEU ASN VAL VAL GLY GLY ALA SER PHE VAL ALA SEQRES 5 E 274 GLY GLU ALA TYR ASN THR ASP GLY ASN GLY HIS GLY THR SEQRES 6 E 274 HIS VAL ALA GLY THR VAL ALA ALA LEU ASP ASN THR THR SEQRES 7 E 274 GLY VAL LEU GLY VAL ALA PRO SER VAL SER LEU TYR ALA SEQRES 8 E 274 VAL LYS VAL LEU ASN SER SER GLY SER GLY SER TYR SER SEQRES 9 E 274 GLY ILE VAL SER GLY ILE GLU TRP ALA THR THR ASN GLY SEQRES 10 E 274 MET ASP VAL ILE ASN MET SER LEU GLY GLY ALA SER GLY SEQRES 11 E 274 SER THR ALA MET LYS GLN ALA VAL ASP ASN ALA TYR ALA SEQRES 12 E 274 ARG GLY VAL VAL VAL VAL ALA ALA ALA GLY ASN SER GLY SEQRES 13 E 274 ASN SER GLY SER THR ASN THR ILE GLY TYR PRO ALA LYS SEQRES 14 E 274 TYR ASP SER VAL ILE ALA VAL GLY ALA VAL ASP SER ASN SEQRES 15 E 274 SER ASN ARG ALA SER PHE SER SER VAL GLY ALA GLU LEU SEQRES 16 E 274 GLU VAL MET ALA PRO GLY ALA GLY VAL TYR SER THR TYR SEQRES 17 E 274 PRO THR ASN THR TYR ALA THR LEU ASN GLY THR SER MET SEQRES 18 E 274 ALA SER PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE LEU SEQRES 19 E 274 SER LYS HIS PRO ASN LEU SER ALA SER GLN VAL ARG ASN SEQRES 20 E 274 ARG LEU SER SER THR ALA THR TYR LEU GLY SER SER PHE SEQRES 21 E 274 TYR TYR GLY LYS GLY LEU ILE ASN VAL GLU ALA ALA ALA SEQRES 22 E 274 GLN SEQRES 1 I 51 VAL ASP CYS SER GLU TYR PRO LYS PRO ALA CYS THR LEU SEQRES 2 I 51 GLU TYR ARG PRO LEU CYS GLY SER ASP ASN LYS THR TYR SEQRES 3 I 51 GLY ASN LYS CYS ASN PHE CYS ASN ALA VAL VAL GLU SER SEQRES 4 I 51 ASN GLY THR LEU THR LEU SER HIS PHE GLY LYS CYS HET CA E 301 1 HET CA E 302 1 HET CA E 303 2 HET CA E 305 2 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *405(H2 O) HELIX 1 1 TYR E 6 ILE E 11 1 6 HELIX 2 2 LYS E 12 GLN E 19 1 8 HELIX 3 3 GLY E 63 ALA E 74 1 12 HELIX 4 4 SER E 103 ASN E 117 1 15 HELIX 5 5 SER E 132 ARG E 145 1 14 HELIX 6 6 GLY E 219 HIS E 238 1 20 HELIX 7 7 SER E 242 THR E 253 1 12 HELIX 8 8 SER E 259 GLY E 264 1 6 HELIX 9 9 ASN E 269 ALA E 274 1 6 HELIX 10 10 ASN I 33 SER I 44 1 12 SHEET 1 A 7 VAL E 44 SER E 49 0 SHEET 2 A 7 SER E 89 LYS E 94 1 O LYS E 94 N ALA E 48 SHEET 3 A 7 LYS E 27 ASP E 32 1 N VAL E 28 O TYR E 91 SHEET 4 A 7 VAL E 121 MET E 124 1 O VAL E 121 N ALA E 29 SHEET 5 A 7 VAL E 148 ALA E 152 1 O VAL E 150 N ILE E 122 SHEET 6 A 7 ILE E 175 VAL E 180 1 O ILE E 175 N ALA E 151 SHEET 7 A 7 LEU E 196 PRO E 201 1 O VAL E 198 N GLY E 178 SHEET 1 B 3 SER E 101 GLY E 102 0 SHEET 2 B 3 ALA I 15 THR I 17 -1 O ALA I 15 N GLY E 102 SHEET 3 B 3 LEU E 126 GLY E 127 -1 N GLY E 127 O CYS I 16 SHEET 1 C 2 VAL E 205 TYR E 209 0 SHEET 2 C 2 THR E 213 LEU E 217 -1 O LEU E 217 N VAL E 205 SHEET 1 D 3 THR I 30 TYR I 31 0 SHEET 2 D 3 LEU I 23 GLY I 25 -1 N LEU I 23 O TYR I 31 SHEET 3 D 3 LEU I 50 PHE I 53 -1 O HIS I 52 N CYS I 24 SSBOND 1 CYS I 8 CYS I 38 1555 1555 2.07 SSBOND 2 CYS I 16 CYS I 35 1555 1555 2.02 SSBOND 3 CYS I 24 CYS I 56 1555 1555 2.04 LINK CA CA E 301 O HIS E 39 1555 1555 2.64 LINK CA CA E 301 O LEU E 42 1555 1555 2.65 LINK CA CA E 301 O ALA E 37 1555 1555 2.79 LINK CA CA E 301 O HOH E4009 1555 1555 3.36 LINK CA CA E 301 O HOH E4126 1555 1555 2.93 LINK CA CA E 301 O HOH E4097 1555 1555 2.86 LINK CA CA E 301 O HOH E4096 1555 1555 2.85 LINK CA CA E 302 OD2 ASP E 41 1555 1555 2.48 LINK CA CA E 302 OE1 GLN E 2 1555 1555 2.40 LINK CA CA E 302 OD1 ASP E 41 1555 1555 2.40 LINK CA CA E 302 O VAL E 81 1555 1555 2.32 LINK CA CA E 302 O THR E 79 1555 1555 2.29 LINK CA CA E 302 OD1 ASN E 77 1555 1555 2.34 LINK CA CA E 302 O LEU E 75 1555 1555 2.29 LINK CA A CA E 303 O HOH E4286 1555 1555 3.38 LINK CA A CA E 303 O SER E 260 1555 1555 2.67 LINK CA A CA E 303 O LEU E 196 1555 1555 2.94 LINK CA B CA E 303 O GLY E 193 1555 1555 3.34 LINK CA B CA E 303 O HOH E4174 1555 1555 3.19 LINK CA B CA E 303 O ALA E 194 1555 1555 2.87 LINK CA B CA E 303 O HOH E4286 1555 1555 2.56 LINK CA A CA E 303 O ALA E 194 1555 1555 2.88 LINK CA A CA E 303 O HOH E4174 1555 1555 2.80 LINK CA A CA E 303 O GLY E 193 1555 1555 2.59 LINK CA B CA E 303 O LEU E 196 1555 1555 2.46 LINK CA B CA E 303 O SER E 260 1555 1555 2.92 LINK CA A CA E 305 O TYR E 171 1555 1555 2.44 LINK CA A CA E 305 O HOH E4084 1555 1555 2.44 LINK CA A CA E 305 O HOH E4021 1555 1555 2.37 LINK CA A CA E 305 O VAL E 174 1555 1555 2.10 LINK CA B CA E 305 O ALA E 169 1555 1555 2.36 LINK CA B CA E 305 O TYR E 171 1555 1555 2.44 LINK CA B CA E 305 O HOH E4084 1555 1555 2.18 LINK CA B CA E 305 O HOH E4021 1555 1555 2.42 LINK CA B CA E 305 O VAL E 174 1555 1555 2.41 LINK CA A CA E 305 O ALA E 169 1555 1555 2.40 LINK CA CA E 301 O HOH E4333 1555 8556 2.84 CISPEP 1 TYR E 167 PRO E 168 0 6.33 CISPEP 2 PRO E 210 THR E 211 0 -4.04 CISPEP 3 TYR I 11 PRO I 12 0 6.40 SITE 1 AC1 7 ALA E 37 HIS E 39 LEU E 42 HOH E4096 SITE 2 AC1 7 HOH E4097 HOH E4126 HOH E4333 SITE 1 AC2 6 GLN E 2 ASP E 41 LEU E 75 ASN E 77 SITE 2 AC2 6 THR E 79 VAL E 81 SITE 1 AC3 6 GLY E 193 ALA E 194 LEU E 196 SER E 260 SITE 2 AC3 6 HOH E4174 HOH E4286 SITE 1 AC4 5 ALA E 169 TYR E 171 VAL E 174 HOH E4021 SITE 2 AC4 5 HOH E4084 CRYST1 62.329 70.810 127.476 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007845 0.00000