PDB Short entry for 1R1P HEADER PEPTIDE BINDING PROTEIN 24-SEP-03 1R1P TITLE STRUCTURAL BASIS FOR DIFFERENTIAL RECOGNITION OF TYROSINE TITLE 2 PHOSPHORYLATED SITES IN THE LINKER FOR ACTIVATION OF T CELLS (LAT) BY TITLE 3 THE ADAPTOR PROTEIN GADS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRB2-RELATED ADAPTOR PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: GADS-SH2 DOMAIN; COMPND 5 SYNONYM: GADS PROTEIN, GROWTH FACTOR RECEPTOR BINDING PROTEIN, GRBLG, COMPND 6 GRB-2-LIKE PROTEIN, GRB2L, HEMATOPOIETIC CELL-ASSOCIATED ADAPTOR COMPND 7 PROTEIN GRPL, GRB-2-RELATED MONOCYTIC ADAPTER PROTEIN, MONOCYTIC COMPND 8 ADAPTER, MONA, ADAPTER PROTEIN GRID; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: LAT PY171 PEPTIDE; COMPND 12 CHAIN: E, F, G, H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GADS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS SH2, GADS, PHOSPHOPEPTIDE, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CHO,R.A.MARIUZZA REVDAT 4 22-JAN-20 1R1P 1 REMARK SEQADV LINK REVDAT 3 04-APR-18 1R1P 1 REMARK REVDAT 2 24-FEB-09 1R1P 1 VERSN REVDAT 1 28-SEP-04 1R1P 0 JRNL AUTH S.CHO,C.A.VELIKOVSKY,C.P.SWAMINATHAN,J.C.HOUTMAN, JRNL AUTH 2 L.E.SAMELSON,R.A.MARIUZZA JRNL TITL STRUCTURAL BASIS FOR DIFFERENTIAL RECOGNITION OF JRNL TITL 2 TYROSINE-PHOSPHORYLATED SITES IN THE LINKER FOR ACTIVATION JRNL TITL 3 OF T CELLS (LAT) BY THE ADAPTOR GADS. JRNL REF EMBO J. V. 23 1441 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15029250 JRNL DOI 10.1038/SJ.EMBOJ.7600168 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 50339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2679 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3639 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4905 ; 1.968 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 8.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2786 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1727 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2072 ; 1.283 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3344 ; 2.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 3.181 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1561 ; 4.886 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 63.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MM TRIS-HCL, 2.5M AMMONIUM SULFATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.97950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.15350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.15350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.48975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.15350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.15350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.46925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.15350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.15350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.48975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.15350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.15350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 109.46925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.97950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 569 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 PHE A 52 REMARK 465 ILE A 53 REMARK 465 ASP A 54 REMARK 465 GLY D 50 REMARK 465 SER D 51 REMARK 465 PHE D 52 REMARK 465 ILE D 53 REMARK 465 ASP D 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 594 O HOH D 533 1.89 REMARK 500 O HOH C 592 O HOH C 597 1.98 REMARK 500 O HOH C 580 O HOH C 593 2.03 REMARK 500 O HOH A 529 O HOH D 537 2.12 REMARK 500 O HOH D 534 O HOH G 321 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE C 52 CB PHE C 52 CG -0.111 REMARK 500 TRP D 60 CB TRP D 60 CG 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 112 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 54 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE B 57 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP B 78 CB - CG - OD2 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 102 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 PHE C 52 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP C 93 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 103 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG C 148 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C 148 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP D 103 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 149 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP F 556 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP F 557 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP H 556 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP H 557 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 57 -154.52 53.99 REMARK 500 PRO A 58 -24.23 -13.96 REMARK 500 TRP A 120 -95.95 -114.13 REMARK 500 TRP B 120 -91.46 -124.29 REMARK 500 ILE C 53 92.78 -173.47 REMARK 500 ILE C 55 53.63 -61.93 REMARK 500 PHE C 57 87.02 176.26 REMARK 500 TRP C 120 -96.85 -125.41 REMARK 500 GLU D 56 -35.05 -136.06 REMARK 500 TRP D 60 169.39 -35.26 REMARK 500 TRP D 120 -91.89 -131.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 55 GLU A 56 -136.13 REMARK 500 GLU A 56 PHE A 57 -126.51 REMARK 500 PHE A 57 PRO A 58 -118.30 REMARK 500 PRO A 58 GLU A 59 -144.44 REMARK 500 ILE C 55 GLU C 56 122.93 REMARK 500 TRP D 60 PHE D 61 -132.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R1Q RELATED DB: PDB REMARK 900 RELATED ID: 1R1S RELATED DB: PDB DBREF 1R1P A 52 149 UNP O89100 GRAP2_MOUSE 50 147 DBREF 1R1P B 52 149 UNP O89100 GRAP2_MOUSE 50 147 DBREF 1R1P C 52 149 UNP O89100 GRAP2_MOUSE 50 147 DBREF 1R1P D 52 149 UNP O89100 GRAP2_MOUSE 50 147 DBREF 1R1P E 555 561 PDB 1R1P 1R1P 555 561 DBREF 1R1P F 555 561 PDB 1R1P 1R1P 555 561 DBREF 1R1P G 555 561 PDB 1R1P 1R1P 555 561 DBREF 1R1P H 555 561 PDB 1R1P 1R1P 555 561 SEQADV 1R1P GLY A 50 UNP O89100 CLONING ARTIFACT SEQADV 1R1P SER A 51 UNP O89100 CLONING ARTIFACT SEQADV 1R1P GLY B 50 UNP O89100 CLONING ARTIFACT SEQADV 1R1P SER B 51 UNP O89100 CLONING ARTIFACT SEQADV 1R1P GLY C 50 UNP O89100 CLONING ARTIFACT SEQADV 1R1P SER C 51 UNP O89100 CLONING ARTIFACT SEQADV 1R1P GLY D 50 UNP O89100 CLONING ARTIFACT SEQADV 1R1P SER D 51 UNP O89100 CLONING ARTIFACT SEQRES 1 A 100 GLY SER PHE ILE ASP ILE GLU PHE PRO GLU TRP PHE HIS SEQRES 2 A 100 GLU GLY LEU SER ARG HIS GLN ALA GLU ASN LEU LEU MET SEQRES 3 A 100 GLY LYS ASP ILE GLY PHE PHE ILE ILE ARG ALA SER GLN SEQRES 4 A 100 SER SER PRO GLY ASP PHE SER ILE SER VAL ARG HIS GLU SEQRES 5 A 100 ASP ASP VAL GLN HIS PHE LYS VAL MET ARG ASP THR LYS SEQRES 6 A 100 GLY ASN TYR PHE LEU TRP THR GLU LYS PHE PRO SER LEU SEQRES 7 A 100 ASN LYS LEU VAL ASP TYR TYR ARG THR THR SER ILE SER SEQRES 8 A 100 LYS GLN LYS GLN VAL PHE LEU ARG ASP SEQRES 1 B 100 GLY SER PHE ILE ASP ILE GLU PHE PRO GLU TRP PHE HIS SEQRES 2 B 100 GLU GLY LEU SER ARG HIS GLN ALA GLU ASN LEU LEU MET SEQRES 3 B 100 GLY LYS ASP ILE GLY PHE PHE ILE ILE ARG ALA SER GLN SEQRES 4 B 100 SER SER PRO GLY ASP PHE SER ILE SER VAL ARG HIS GLU SEQRES 5 B 100 ASP ASP VAL GLN HIS PHE LYS VAL MET ARG ASP THR LYS SEQRES 6 B 100 GLY ASN TYR PHE LEU TRP THR GLU LYS PHE PRO SER LEU SEQRES 7 B 100 ASN LYS LEU VAL ASP TYR TYR ARG THR THR SER ILE SER SEQRES 8 B 100 LYS GLN LYS GLN VAL PHE LEU ARG ASP SEQRES 1 C 100 GLY SER PHE ILE ASP ILE GLU PHE PRO GLU TRP PHE HIS SEQRES 2 C 100 GLU GLY LEU SER ARG HIS GLN ALA GLU ASN LEU LEU MET SEQRES 3 C 100 GLY LYS ASP ILE GLY PHE PHE ILE ILE ARG ALA SER GLN SEQRES 4 C 100 SER SER PRO GLY ASP PHE SER ILE SER VAL ARG HIS GLU SEQRES 5 C 100 ASP ASP VAL GLN HIS PHE LYS VAL MET ARG ASP THR LYS SEQRES 6 C 100 GLY ASN TYR PHE LEU TRP THR GLU LYS PHE PRO SER LEU SEQRES 7 C 100 ASN LYS LEU VAL ASP TYR TYR ARG THR THR SER ILE SER SEQRES 8 C 100 LYS GLN LYS GLN VAL PHE LEU ARG ASP SEQRES 1 D 100 GLY SER PHE ILE ASP ILE GLU PHE PRO GLU TRP PHE HIS SEQRES 2 D 100 GLU GLY LEU SER ARG HIS GLN ALA GLU ASN LEU LEU MET SEQRES 3 D 100 GLY LYS ASP ILE GLY PHE PHE ILE ILE ARG ALA SER GLN SEQRES 4 D 100 SER SER PRO GLY ASP PHE SER ILE SER VAL ARG HIS GLU SEQRES 5 D 100 ASP ASP VAL GLN HIS PHE LYS VAL MET ARG ASP THR LYS SEQRES 6 D 100 GLY ASN TYR PHE LEU TRP THR GLU LYS PHE PRO SER LEU SEQRES 7 D 100 ASN LYS LEU VAL ASP TYR TYR ARG THR THR SER ILE SER SEQRES 8 D 100 LYS GLN LYS GLN VAL PHE LEU ARG ASP SEQRES 1 E 7 ACE ASP ASP PTR VAL ASN VAL SEQRES 1 F 7 ACE ASP ASP PTR VAL ASN VAL SEQRES 1 G 7 ACE ASP ASP PTR VAL ASN VAL SEQRES 1 H 7 ACE ASP ASP PTR VAL ASN VAL MODRES 1R1P PTR E 558 TYR O-PHOSPHOTYROSINE MODRES 1R1P PTR F 558 TYR O-PHOSPHOTYROSINE MODRES 1R1P PTR G 558 TYR O-PHOSPHOTYROSINE MODRES 1R1P PTR H 558 TYR O-PHOSPHOTYROSINE HET ACE E 555 3 HET PTR E 558 16 HET ACE F 555 3 HET PTR F 558 16 HET ACE G 555 3 HET PTR G 558 16 HET ACE H 555 3 HET PTR H 558 16 HET SO4 A 500 5 HET SO4 A 508 5 HET SO4 B 501 5 HET SO4 B 504 5 HET SO4 B 509 5 HET SO4 C 502 5 HET SO4 C 507 5 HET SO4 D 503 5 HET SO4 D 505 5 HET SO4 D 506 5 HETNAM ACE ACETYL GROUP HETNAM PTR O-PHOSPHOTYROSINE HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 5 ACE 4(C2 H4 O) FORMUL 5 PTR 4(C9 H12 N O6 P) FORMUL 9 SO4 10(O4 S 2-) FORMUL 19 HOH *360(H2 O) HELIX 1 1 SER A 66 GLY A 76 1 11 HELIX 2 2 SER A 126 ARG A 135 1 10 HELIX 3 3 SER B 66 GLY B 76 1 11 HELIX 4 4 SER B 126 THR B 137 1 12 HELIX 5 5 SER C 66 GLY C 76 1 11 HELIX 6 6 SER C 126 ARG C 135 1 10 HELIX 7 7 SER D 66 GLY D 76 1 11 HELIX 8 8 SER D 126 THR D 137 1 12 SHEET 1 A 3 PHE A 82 ALA A 86 0 SHEET 2 A 3 PHE A 94 ARG A 99 -1 O SER A 95 N ARG A 85 SHEET 3 A 3 VAL A 104 LYS A 108 -1 O GLN A 105 N VAL A 98 SHEET 1 B 3 MET A 110 ARG A 111 0 SHEET 2 B 3 TYR A 117 PHE A 118 -1 O PHE A 118 N MET A 110 SHEET 3 B 3 LYS A 123 PHE A 124 -1 O PHE A 124 N TYR A 117 SHEET 1 C 3 PHE B 82 ALA B 86 0 SHEET 2 C 3 PHE B 94 ARG B 99 -1 O SER B 95 N ARG B 85 SHEET 3 C 3 VAL B 104 LYS B 108 -1 O GLN B 105 N VAL B 98 SHEET 1 D 3 MET B 110 ARG B 111 0 SHEET 2 D 3 TYR B 117 PHE B 118 -1 O PHE B 118 N MET B 110 SHEET 3 D 3 LYS B 123 PHE B 124 -1 O PHE B 124 N TYR B 117 SHEET 1 E 3 PHE C 82 ALA C 86 0 SHEET 2 E 3 PHE C 94 ARG C 99 -1 O SER C 97 N ILE C 83 SHEET 3 E 3 VAL C 104 LYS C 108 -1 O PHE C 107 N ILE C 96 SHEET 1 F 2 MET C 110 ARG C 111 0 SHEET 2 F 2 TYR C 117 PHE C 118 -1 O PHE C 118 N MET C 110 SHEET 1 G 3 PHE D 82 ALA D 86 0 SHEET 2 G 3 PHE D 94 ARG D 99 -1 O SER D 95 N ARG D 85 SHEET 3 G 3 VAL D 104 LYS D 108 -1 O PHE D 107 N ILE D 96 SHEET 1 H 3 MET D 110 ARG D 111 0 SHEET 2 H 3 TYR D 117 PHE D 118 -1 O PHE D 118 N MET D 110 SHEET 3 H 3 LYS D 123 PHE D 124 -1 O PHE D 124 N TYR D 117 LINK C ACE E 555 N ASP E 556 1555 1555 1.39 LINK C ACE F 555 N ASP F 556 1555 1555 1.37 LINK C ACE G 555 N ASP G 556 1555 1555 1.36 LINK C ACE H 555 N ASP H 556 1555 1555 1.37 LINK C ASP E 557 N PTR E 558 1555 1555 1.33 LINK C PTR E 558 N VAL E 559 1555 1555 1.31 LINK C ASP F 557 N PTR F 558 1555 1555 1.31 LINK C PTR F 558 N VAL F 559 1555 1555 1.34 LINK C ASP G 557 N PTR G 558 1555 1555 1.31 LINK C PTR G 558 N VAL G 559 1555 1555 1.33 LINK C ASP H 557 N PTR H 558 1555 1555 1.33 LINK C PTR H 558 N VAL H 559 1555 1555 1.31 SITE 1 AC1 6 TRP A 120 THR A 121 GLU A 122 TYR A 133 SITE 2 AC1 6 TYR A 134 LYS A 141 SITE 1 AC2 10 ARG A 148 TRP B 120 THR B 121 GLU B 122 SITE 2 AC2 10 TYR B 133 TYR B 134 LYS B 141 HOH B 511 SITE 3 AC2 10 HOH B 554 HOH B 572 SITE 1 AC3 7 TRP C 120 THR C 121 GLU C 122 TYR C 133 SITE 2 AC3 7 TYR C 134 LYS C 141 HOH C 539 SITE 1 AC4 8 ARG C 148 TRP D 120 THR D 121 GLU D 122 SITE 2 AC4 8 TYR D 133 TYR D 134 LYS D 141 HOH D 515 SITE 1 AC5 5 ASP A 112 THR A 113 LYS A 114 ASP B 112 SITE 2 AC5 5 THR B 113 SITE 1 AC6 4 ASP C 112 THR C 113 ASP D 112 THR D 113 SITE 1 AC7 3 SER D 126 ASN D 128 LYS D 129 SITE 1 AC8 4 SER C 126 ASN C 128 LYS C 129 HOH C 598 SITE 1 AC9 4 SER A 126 ASN A 128 LYS A 129 HOH A 577 SITE 1 BC1 6 SER B 126 ASN B 128 LYS B 129 HOH B 549 SITE 2 BC1 6 HOH B 558 HOH B 585 CRYST1 90.307 90.307 145.959 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006851 0.00000