PDB Short entry for 1R4T HEADER TOXIN 08-OCT-03 1R4T TITLE SOLUTION STRUCTURE OF EXOENZYME S COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOENZYME S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAP-DOMAIN (RESIDUES 96-234); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS EXOS, PSEUDOMONAS AERUGINOSA, GAP, TOXIN, VIRULENCE FACTOR, SIGNAL KEYWDS 2 TRANSDUCTION EXPDTA SOLUTION NMR NUMMDL 23 AUTHOR G.M.LANGDON,D.LEITNER,D.LABUDDE,R.KUHNE,P.SCHMIEDER,K.AKTORIES, AUTHOR 2 H.O.OSCHKINAT,G.SCHMIDT REVDAT 3 02-MAR-22 1R4T 1 REMARK SEQADV REVDAT 2 24-FEB-09 1R4T 1 VERSN REVDAT 1 12-APR-05 1R4T 0 JRNL AUTH G.M.LANGDON,D.LEITNER,D.LABUDDE,R.KUHNE,P.SCHMIEDER, JRNL AUTH 2 K.AKTORIES,H.O.OSCHKINAT,G.SCHMIDT JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL GTPASE ACTIVATING JRNL TITL 2 DOMAIN OF PSEUDOMONAS AERUGINOSA EXOENZYME S JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, AMBER 7 REMARK 3 AUTHORS : BRUKER (XWINNMR), CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R4T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020437. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.2 MM EXOS [U-95% 13C; U REMARK 210 -90% 15N]50MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.106, XWINNMR 2.6, DYANA REMARK 210 1.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 71 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-23 REMARK 465 RES C SSSEQI REMARK 465 GLY A 93 REMARK 465 SER A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 SER A 97 REMARK 465 ALA A 98 REMARK 465 VAL A 99 REMARK 465 VAL A 100 REMARK 465 PHE A 101 REMARK 465 LYS A 102 REMARK 465 GLN A 103 REMARK 465 MET A 104 REMARK 465 VAL A 105 REMARK 465 LEU A 106 REMARK 465 GLN A 107 REMARK 465 GLN A 108 REMARK 465 ALA A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 233 REMARK 465 ASP A 234 REMARK 465 TYR A 235 REMARK 465 PRO A 236 REMARK 465 TYR A 237 REMARK 465 ASP A 238 REMARK 465 VAL A 239 REMARK 465 PRO A 240 REMARK 465 ASP A 241 REMARK 465 TYR A 242 REMARK 465 ALA A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD23 LEU A 117 HD21 LEU A 152 0.98 REMARK 500 HD13 LEU A 171 HG12 VAL A 213 1.13 REMARK 500 O GLU A 134 H LEU A 138 1.23 REMARK 500 HG21 THR A 127 H GLY A 130 1.31 REMARK 500 O ILE A 176 HE1 TRP A 184 1.35 REMARK 500 O ILE A 176 H ILE A 179 1.37 REMARK 500 O GLY A 143 H SER A 147 1.41 REMARK 500 O SER A 147 H ALA A 151 1.49 REMARK 500 O ARG A 165 H GLY A 169 1.52 REMARK 500 O VAL A 217 H ARG A 221 1.57 REMARK 500 O LEU A 202 H ILE A 206 1.58 REMARK 500 O ARG A 203 OG1 THR A 207 1.98 REMARK 500 O GLY A 130 N GLU A 134 2.10 REMARK 500 O GLU A 134 N LEU A 138 2.15 REMARK 500 O ILE A 176 NE1 TRP A 184 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 133 -63.48 -96.74 REMARK 500 1 ASP A 142 -11.15 86.61 REMARK 500 1 ALA A 180 144.64 -38.93 REMARK 500 1 TRP A 184 36.25 -76.02 REMARK 500 1 ASP A 197 -74.73 -88.54 REMARK 500 1 SER A 199 -66.17 -127.10 REMARK 500 2 LEU A 126 172.74 -46.64 REMARK 500 2 SER A 140 -154.82 -98.34 REMARK 500 2 ASP A 142 -11.08 85.49 REMARK 500 2 ASP A 197 -71.91 -72.89 REMARK 500 3 LEU A 126 -176.20 -60.43 REMARK 500 3 ASP A 142 -7.39 84.43 REMARK 500 3 ALA A 180 140.98 -38.41 REMARK 500 3 ASP A 197 -74.41 -69.89 REMARK 500 4 SER A 140 -98.99 153.90 REMARK 500 4 ASP A 142 17.99 52.51 REMARK 500 4 ALA A 180 145.36 -37.48 REMARK 500 4 ASP A 197 -74.58 -65.89 REMARK 500 4 SER A 199 -65.48 -108.41 REMARK 500 5 SER A 140 -157.96 -94.34 REMARK 500 5 SER A 199 -64.22 -105.70 REMARK 500 6 LEU A 126 -155.03 -58.80 REMARK 500 6 THR A 127 169.02 174.82 REMARK 500 6 SER A 140 -158.38 -93.06 REMARK 500 6 ASP A 142 -4.57 82.26 REMARK 500 6 ALA A 180 143.33 -38.02 REMARK 500 6 ASP A 197 -73.12 -89.41 REMARK 500 6 SER A 199 -67.14 -135.81 REMARK 500 7 ASP A 142 -15.60 86.52 REMARK 500 7 SER A 199 -64.10 -106.90 REMARK 500 8 LEU A 126 172.65 -46.61 REMARK 500 8 ASP A 142 -6.52 82.77 REMARK 500 8 ALA A 180 144.43 -32.44 REMARK 500 8 TRP A 184 33.49 -75.71 REMARK 500 9 LEU A 126 163.31 -41.89 REMARK 500 9 SER A 140 -148.89 -95.17 REMARK 500 9 ASP A 142 -7.18 82.05 REMARK 500 9 ALA A 180 143.89 -38.16 REMARK 500 9 TRP A 184 32.51 -74.98 REMARK 500 9 ASP A 197 -72.35 -68.83 REMARK 500 10 GLU A 134 -34.61 -130.02 REMARK 500 10 LEU A 138 3.67 -67.59 REMARK 500 10 SER A 140 -153.88 -87.79 REMARK 500 10 ASP A 142 -6.56 83.91 REMARK 500 10 TRP A 184 31.82 -76.83 REMARK 500 10 SER A 199 -66.11 -103.11 REMARK 500 11 ARG A 133 -61.05 -96.11 REMARK 500 11 SER A 140 -100.29 154.87 REMARK 500 11 ASP A 142 18.01 51.65 REMARK 500 11 TRP A 184 31.34 -74.70 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5957 RELATED DB: BMRB DBREF 1R4T A 96 234 UNP Q93SQ1 Q93SQ1_PSEAE 96 234 SEQADV 1R4T GLY A 93 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T SER A 94 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T ALA A 95 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T TYR A 235 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T PRO A 236 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T TYR A 237 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T ASP A 238 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T VAL A 239 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T PRO A 240 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T ASP A 241 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T TYR A 242 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T ALA A 243 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T SER A 244 UNP Q93SQ1 CLONING ARTIFACT SEQADV 1R4T LEU A 245 UNP Q93SQ1 CLONING ARTIFACT SEQRES 1 A 153 GLY SER ALA SER SER ALA VAL VAL PHE LYS GLN MET VAL SEQRES 2 A 153 LEU GLN GLN ALA LEU PRO MET THR LEU LYS GLY LEU ASP SEQRES 3 A 153 LYS ALA SER GLU LEU ALA THR LEU THR PRO GLU GLY LEU SEQRES 4 A 153 ALA ARG GLU HIS SER ARG LEU ALA SER GLY ASP GLY ALA SEQRES 5 A 153 LEU ARG SER LEU SER THR ALA LEU ALA GLY ILE ARG ALA SEQRES 6 A 153 GLY SER GLN VAL GLU GLU SER ARG ILE GLN ALA GLY ARG SEQRES 7 A 153 LEU LEU GLU ARG SER ILE GLY GLY ILE ALA LEU GLN GLN SEQRES 8 A 153 TRP GLY THR THR GLY GLY ALA ALA SER GLN LEU VAL LEU SEQRES 9 A 153 ASP ALA SER PRO GLU LEU ARG ARG GLU ILE THR ASP GLN SEQRES 10 A 153 LEU HIS GLN VAL MET SER GLU VAL ALA LEU LEU ARG GLN SEQRES 11 A 153 ALA VAL GLU SER GLU VAL SER ARG VAL SER ALA ASP TYR SEQRES 12 A 153 PRO TYR ASP VAL PRO ASP TYR ALA SER LEU HELIX 1 1 PRO A 111 LYS A 119 1 9 HELIX 2 2 LYS A 119 ALA A 124 1 6 HELIX 3 3 THR A 127 ARG A 133 1 7 HELIX 4 4 ARG A 133 ALA A 139 1 7 HELIX 5 5 GLY A 143 ALA A 157 1 15 HELIX 6 6 VAL A 161 GLU A 173 1 13 HELIX 7 7 GLN A 182 TRP A 184 5 3 HELIX 8 8 GLY A 189 ALA A 198 1 10 HELIX 9 9 SER A 199 VAL A 231 1 33 SHEET 1 A 2 SER A 175 ILE A 176 0 SHEET 2 A 2 ILE A 179 ALA A 180 -1 O ILE A 179 N ILE A 176 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000