PDB Short entry for 1R60 HEADER HYDROLASE 14-OCT-03 1R60 TITLE A HOMOLOGY-DERIVED MODEL OF HUMAN TRIPEPTIDYL-PEPTIDASE I TITLE 2 (CLN2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPEPTIDYL-PEPTIDASE I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLN2; COMPND 5 EC: 3.4.14.9; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PSEUDOIODOTYROSTATIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS HYDROLASE EXPDTA THEORETICAL MODEL AUTHOR A.WLODAWER,S.R.DURELL,M.LI,H.OYAMA,K.ODA,B.M.DUNN REVDAT 2 02-MAR-04 1R60 1 JRNL REVDAT 1 28-OCT-03 1R60 0 JRNL AUTH A.WLODAWER,S.R.DURELL,M.LI,H.OYAMA,K.ODA,B.M.DUNN JRNL TITL A MODEL OF TRIPEPTIDYL-PEPTIDASE I (CLN2), A JRNL TITL 2 UBIQUITOUS AND HIGHLY CONSERVED MEMBER OF THE JRNL TITL 3 SEDOLISIN FAMILY OF SERINE-CARBOXYL PEPTIDASES JRNL REF BMC STRUCT.BIOL. V. 3 8 2003 JRNL REFN UK ESSN 1472-6807 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R60 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-2003. REMARK 100 THE RCSB ID CODE IS RCSB020480. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELING; MODELING PROGRAMS: LOOK/GENEMINE AND REMARK 220 DEEP VIEW REBUILT WITH THE MOLECULAR PACKAGE QUANTA. REMARK 220 THIS MODEL IS BASED UPON THE COORDINATES 1GA4 (SEDOLISIN REMARK 220 COMPLEXED WITH PSEUDOIODOTYROSTATIN) AND WAS REFINED REMARK 220 WITH CHARMM. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 IVA B 500 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 180 142.45 68.24 REMARK 500 SER A 197 138.23 65.45 REMARK 500 ASN A 206 -115.18 57.99 REMARK 500 ARG A 302 144.59 81.42 DBREF 1R60 A 1 368 UNP O14773 TPP1_HUMAN 196 563 SEQRES 1 A 368 LEU HIS LEU GLY VAL THR PRO SER VAL ILE ARG LYS ARG SEQRES 2 A 368 TYR ASN LEU THR SER GLN ASP VAL GLY SER GLY THR SER SEQRES 3 A 368 ASN ASN SER GLN ALA CYS ALA GLN PHE LEU GLU GLN TYR SEQRES 4 A 368 PHE HIS ASP SER ASP LEU ALA GLN PHE MET ARG LEU PHE SEQRES 5 A 368 GLY GLY ASN PHE ALA HIS GLN ALA SER VAL ALA ARG VAL SEQRES 6 A 368 VAL GLY GLN GLN GLY ARG GLY ARG ALA GLY ILE GLU ALA SEQRES 7 A 368 SER LEU ASP VAL GLN TYR LEU MET SER ALA GLY ALA ASN SEQRES 8 A 368 ILE SER THR TRP VAL TYR SER SER PRO GLY ARG HIS GLU SEQRES 9 A 368 GLY GLN GLU PRO PHE LEU GLN TRP LEU MET LEU LEU SER SEQRES 10 A 368 ASN GLU SER ALA LEU PRO HIS VAL HIS THR VAL SER TYR SEQRES 11 A 368 GLY ASP ASP GLU ASP SER LEU SER SER ALA TYR ILE GLN SEQRES 12 A 368 ARG VAL ASN THR GLU LEU MET LYS ALA ALA ALA ARG GLY SEQRES 13 A 368 LEU THR LEU LEU PHE ALA SER GLY ASP SER GLY ALA GLY SEQRES 14 A 368 CYS TRP SER VAL SER GLY ARG HIS GLN PHE ARG PRO THR SEQRES 15 A 368 PHE PRO ALA SER SER PRO TYR VAL THR THR VAL GLY GLY SEQRES 16 A 368 THR SER PHE GLN GLU PRO PHE LEU ILE THR ASN GLU ILE SEQRES 17 A 368 VAL ASP TYR ILE SER GLY GLY GLY PHE SER ASN VAL PHE SEQRES 18 A 368 PRO ARG PRO SER TYR GLN GLU GLU ALA VAL THR LYS PHE SEQRES 19 A 368 LEU SER SER SER PRO HIS LEU PRO PRO SER SER TYR PHE SEQRES 20 A 368 ASN ALA SER GLY ARG ALA TYR PRO ASP VAL ALA ALA LEU SEQRES 21 A 368 SER ASP GLY TYR TRP VAL VAL SER ASN ARG VAL PRO ILE SEQRES 22 A 368 PRO TRP VAL SER GLY THR SER ALA SER THR PRO VAL PHE SEQRES 23 A 368 GLY GLY ILE LEU SER LEU ILE ASN GLU HIS ARG ILE LEU SEQRES 24 A 368 SER GLY ARG PRO PRO LEU GLY PHE LEU ASN PRO ARG LEU SEQRES 25 A 368 TYR GLN GLN HIS GLY ALA GLY LEU PHE ASP VAL THR ARG SEQRES 26 A 368 GLY CYS HIS GLU SER CYS LEU ASP GLU GLU VAL GLU GLY SEQRES 27 A 368 GLN GLY PHE CYS SER GLY PRO GLY TRP ASP PRO VAL THR SEQRES 28 A 368 GLY TRP GLY THR PRO ASN PHE PRO ALA LEU LEU LYS THR SEQRES 29 A 368 LEU LEU ASN PRO SEQRES 1 B 3 IVA PHI TYB MODRES 1R60 PHI B 501 PHE IODO-PHENYLALANINE MODRES 1R60 TYB B 502 TYR TYROSINAL HET IVA B 500 6 HET PHI B 501 12 HET TYB B 502 12 HET CA 1500 1 HETNAM IVA ISOVALERIC ACID HETNAM PHI IODO-PHENYLALANINE HETNAM TYB TYROSINAL HETNAM CA CALCIUM ION FORMUL 2 IVA C5 H10 O2 FORMUL 2 PHI C9 H10 I N O2 FORMUL 2 TYB C9 H11 N O2 FORMUL 3 CA CA 2+ HELIX 1 1 THR A 6 TYR A 14 5 9 HELIX 2 2 GLN A 38 PHE A 52 1 15 HELIX 3 3 GLY A 75 LEU A 85 1 11 HELIX 4 4 MET A 86 ALA A 90 5 5 HELIX 5 5 PRO A 108 LEU A 116 1 9 HELIX 6 6 TYR A 141 ALA A 154 1 14 HELIX 7 7 GLY A 278 ALA A 281 5 4 HELIX 8 8 SER A 282 LEU A 290 1 9 HELIX 9 9 SER A 291 ILE A 293 5 3 HELIX 10 10 LEU A 308 TYR A 313 1 6 HELIX 11 11 ASN A 357 THR A 364 1 8 SHEET 1 A 3 GLY A 4 VAL A 5 0 SHEET 2 A 3 GLY A 263 SER A 268 1 O GLY A 263 N VAL A 5 SHEET 3 A 3 VAL A 271 TRP A 275 -1 O VAL A 271 N SER A 268 SHEET 1 B 2 ASP A 132 ASP A 133 0 SHEET 2 B 2 THR A 182 PHE A 183 -1 O PHE A 183 N ASP A 132 SHEET 1 C 3 LEU A 160 PHE A 161 0 SHEET 2 C 3 THR A 191 GLY A 195 1 O THR A 191 N PHE A 161 SHEET 3 C 3 VAL A 257 ALA A 259 1 O ALA A 259 N GLY A 194 SHEET 1 D 2 GLY A 169 CYS A 170 0 SHEET 2 D 2 ARG A 176 GLN A 178 -1 O ARG A 176 N CYS A 170 SHEET 1 E 2 GLY A 216 SER A 218 0 SHEET 2 E 2 GLY A 251 TYR A 254 -1 O GLY A 251 N SER A 218 SSBOND 1 CYS A 327 CYS A 342 LINK OG SER A 280 C TYB B 502 CISPEP 1 PHE A 183 PRO A 184 0 0.32 CISPEP 2 PRO A 242 PRO A 243 0 -2.22 CISPEP 3 TYR A 254 PRO A 255 0 1.06 CISPEP 4 ARG A 302 PRO A 303 0 1.47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000