PDB Short entry for 1R74 HEADER TRANSFERASE 17-OCT-03 1R74 TITLE CRYSTAL STRUCTURE OF HUMAN GLYCINE N-METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGE3 KEYWDS GLYCINE N-METHYLTRANSFERASE, HUMAN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,Z.LUKA,C.WAGNER,M.E.NEWCOMER REVDAT 3 13-JUL-11 1R74 1 VERSN REVDAT 2 24-FEB-09 1R74 1 VERSN REVDAT 1 21-SEP-04 1R74 0 JRNL AUTH S.PAKHOMOVA,Z.LUKA,S.GROHMANN,C.WAGNER,M.E.NEWCOMER JRNL TITL GLYCINE N-METHYLTRANSFERASES: A COMPARISON OF THE CRYSTAL JRNL TITL 2 STRUCTURES AND KINETIC PROPERTIES OF RECOMBINANT HUMAN, JRNL TITL 3 MOUSE AND RAT ENZYMES. JRNL REF PROTEINS V. 57 331 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15340920 JRNL DOI 10.1002/PROT.20209 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 22070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.560 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4381 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3904 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5945 ; 2.167 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9038 ; 1.605 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 7.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4929 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 917 ; 0.033 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 952 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4270 ; 0.252 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2666 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.345 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.438 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2741 ; 0.862 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4355 ; 1.568 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 2.588 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1590 ; 4.003 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 125 1 REMARK 3 1 B 6 B 126 1 REMARK 3 2 A 133 A 224 1 REMARK 3 2 B 133 B 225 1 REMARK 3 3 A 237 A 293 1 REMARK 3 3 B 237 B 293 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3729 ; 0.14 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3729 ; 0.21 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-02; NULL REMARK 200 TEMPERATURE (KELVIN) : 103; NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; NULL REMARK 200 RADIATION SOURCE : ROTATING ANODE; NULL REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1XVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, NA CITRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 300 GENERATED FROM THE DIMER IN THE ASYMMETRIC UNIT BY THE OPERATION: REMARK 300 -X+2,-Y-1,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 151.68000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.23000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 126 REMARK 465 SER A 127 REMARK 465 ALA A 128 REMARK 465 GLN A 225 REMARK 465 VAL A 226 REMARK 465 PRO A 227 REMARK 465 GLY A 228 REMARK 465 ALA A 229 REMARK 465 GLY A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 232 REMARK 465 GLY A 233 REMARK 465 SER A 234 REMARK 465 PRO A 235 REMARK 465 ASP A 294 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 VAL B 226 REMARK 465 PRO B 227 REMARK 465 GLY B 228 REMARK 465 ALA B 229 REMARK 465 GLY B 230 REMARK 465 GLN B 231 REMARK 465 ASP B 232 REMARK 465 GLY B 233 REMARK 465 SER B 234 REMARK 465 PRO B 235 REMARK 465 ASP B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 ILE A 34 CG1 CG2 CD1 REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 THR A 37 OG1 CG2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 SER A 39 OG REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 SER A 153 OG REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 SER A 238 OG REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLN A 265 CG CD OE1 NE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 SER B 127 OG REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 185 ND2 ASN A 213 2745 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 43 CG GLU B 43 CD 0.102 REMARK 500 TYR B 44 CD1 TYR B 44 CE1 0.107 REMARK 500 GLN B 54 CG GLN B 54 CD 0.187 REMARK 500 VAL B 63 CB VAL B 63 CG1 -0.169 REMARK 500 VAL B 69 CB VAL B 69 CG2 0.141 REMARK 500 LYS B 160 CA LYS B 160 CB 0.138 REMARK 500 SER B 184 CB SER B 184 OG -0.098 REMARK 500 TYR B 244 CD1 TYR B 244 CE1 -0.095 REMARK 500 TYR B 245 CZ TYR B 245 CE2 0.079 REMARK 500 HIS B 247 CE1 HIS B 247 NE2 -0.100 REMARK 500 CYS B 248 CB CYS B 248 SG 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 62 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 88 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 123 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 151 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 167 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 CYS B 264 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 73.25 -151.85 REMARK 500 ASN A 213 15.56 56.16 REMARK 500 PHE A 272 -4.37 77.53 REMARK 500 GLN A 279 150.81 -42.38 REMARK 500 ASP B 36 77.85 -110.18 REMARK 500 SER B 127 -175.68 -46.61 REMARK 500 ALA B 128 63.02 -68.85 REMARK 500 GLU B 129 -88.31 -166.21 REMARK 500 ASN B 140 32.26 71.78 REMARK 500 ASN B 213 19.60 56.16 REMARK 500 PHE B 272 -8.99 77.62 REMARK 500 GLN B 279 151.24 -44.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 181 0.06 SIDE CHAIN REMARK 500 HIS B 247 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 213 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 2001 DBREF 1R74 A 1 294 UNP Q14749 GNMT_HUMAN 1 294 DBREF 1R74 B 1 294 UNP Q14749 GNMT_HUMAN 1 294 SEQRES 1 A 294 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 A 294 ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 A 294 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 A 294 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 A 294 ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA CYS SEQRES 6 A 294 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 A 294 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 A 294 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS GLU SEQRES 9 A 294 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 A 294 MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU GLY SEQRES 11 A 294 GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA SEQRES 12 A 294 HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS ARG SEQRES 13 A 294 LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA GLY SEQRES 14 A 294 GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS ILE SEQRES 15 A 294 LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR SEQRES 16 A 294 TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER VAL SEQRES 17 A 294 LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP SEQRES 18 A 294 TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SER SEQRES 19 A 294 PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO HIS SEQRES 20 A 294 CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA PHE SEQRES 21 A 294 GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE LYS SEQRES 22 A 294 PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR PHE SEQRES 23 A 294 ILE HIS VAL LEU LYS ARG THR ASP SEQRES 1 B 294 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 B 294 ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 B 294 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 B 294 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 B 294 ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA CYS SEQRES 6 B 294 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 B 294 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 B 294 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS GLU SEQRES 9 B 294 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 B 294 MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU GLY SEQRES 11 B 294 GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA SEQRES 12 B 294 HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS ARG SEQRES 13 B 294 LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA GLY SEQRES 14 B 294 GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS ILE SEQRES 15 B 294 LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR SEQRES 16 B 294 TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER VAL SEQRES 17 B 294 LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP SEQRES 18 B 294 TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SER SEQRES 19 B 294 PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO HIS SEQRES 20 B 294 CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA PHE SEQRES 21 B 294 GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE LYS SEQRES 22 B 294 PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR PHE SEQRES 23 B 294 ILE HIS VAL LEU LYS ARG THR ASP HET BME A1187 4 HET CIT A1001 13 HET BME B2187 4 HET BME B2264 4 HET BME B2284 4 HET CIT B2001 13 HETNAM BME BETA-MERCAPTOETHANOL HETNAM CIT CITRIC ACID FORMUL 3 BME 4(C2 H6 O S) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 9 HOH *60(H2 O) HELIX 1 1 GLY A 24 GLY A 24 5 1 HELIX 2 2 ALA A 26 VAL A 29 5 4 HELIX 3 3 TYR A 44 LEU A 52 1 9 HELIX 4 4 GLY A 68 LEU A 74 1 7 HELIX 5 5 GLU A 76 GLY A 78 5 3 HELIX 6 6 MET A 90 ARG A 101 1 12 HELIX 7 7 GLU A 104 LYS A 109 1 6 HELIX 8 8 ASN A 116 MET A 118 5 3 HELIX 9 9 THR A 119 VAL A 124 1 6 HELIX 10 10 SER A 141 LEU A 145 5 5 HELIX 11 11 GLU A 154 LEU A 159 1 6 HELIX 12 12 ASN A 161 SER A 164 5 4 HELIX 13 13 ASN A 178 GLY A 186 1 9 HELIX 14 14 CYS A 248 PHE A 260 1 13 HELIX 15 15 VAL B 29 ILE B 34 1 6 HELIX 16 16 THR B 41 HIS B 55 1 15 HELIX 17 17 GLY B 68 GLU B 77 1 10 HELIX 18 18 SER B 87 ARG B 101 1 15 HELIX 19 19 GLU B 104 LYS B 109 1 6 HELIX 20 20 ASN B 116 MET B 118 5 3 HELIX 21 21 THR B 119 VAL B 124 1 6 HELIX 22 22 SER B 141 LEU B 145 5 5 HELIX 23 23 GLN B 152 LEU B 159 1 8 HELIX 24 24 ASN B 161 SER B 164 5 4 HELIX 25 25 ASN B 178 GLY B 186 1 9 HELIX 26 26 CYS B 248 PHE B 260 1 13 SHEET 1 A 8 VAL A 111 GLU A 114 0 SHEET 2 A 8 THR A 82 ASP A 85 1 N SER A 83 O VAL A 111 SHEET 3 A 8 LEU A 61 VAL A 63 1 N ASP A 62 O THR A 82 SHEET 4 A 8 PHE A 132 CYS A 137 1 O ILE A 136 N VAL A 63 SHEET 5 A 8 VAL A 166 ARG A 177 1 O ARG A 167 N PHE A 132 SHEET 6 A 8 TYR A 285 LYS A 291 -1 O HIS A 288 N ILE A 174 SHEET 7 A 8 SER A 267 GLY A 270 -1 N LEU A 269 O ILE A 287 SHEET 8 A 8 LYS A 273 PRO A 274 -1 O LYS A 273 N GLY A 270 SHEET 1 B 3 ASP A 203 VAL A 211 0 SHEET 2 B 3 LYS A 214 THR A 223 -1 O MET A 217 N LEU A 209 SHEET 3 B 3 ARG A 241 TYR A 244 -1 O LEU A 242 N LEU A 220 SHEET 1 C 8 VAL B 111 GLU B 114 0 SHEET 2 C 8 SER B 80 ASP B 85 1 N SER B 83 O VAL B 111 SHEET 3 C 8 ARG B 59 VAL B 63 1 N ASP B 62 O THR B 82 SHEET 4 C 8 PHE B 132 CYS B 137 1 O ILE B 136 N VAL B 63 SHEET 5 C 8 VAL B 166 ARG B 177 1 O VAL B 173 N CYS B 137 SHEET 6 C 8 TYR B 285 ARG B 292 -1 O LEU B 290 N LEU B 172 SHEET 7 C 8 CYS B 264 GLY B 270 -1 N LEU B 269 O ILE B 287 SHEET 8 C 8 LYS B 273 PRO B 274 -1 O LYS B 273 N GLY B 270 SHEET 1 D 3 LYS B 202 VAL B 211 0 SHEET 2 D 3 LYS B 214 VAL B 224 -1 O MET B 217 N LEU B 209 SHEET 3 D 3 SER B 238 TYR B 244 -1 O TYR B 244 N VAL B 218 LINK S2 BME A1187 SG CYS A 187 1555 1555 2.06 LINK S2 BME B2187 SG CYS B 187 1555 1555 2.02 LINK S2 BME B2264 SG CYS B 264 1555 1555 2.02 LINK S2 BME B2284 SG CYS B 284 1555 1555 2.07 SITE 1 AC1 6 GLN A 54 GLY A 186 CYS A 187 VAL A 204 SITE 2 AC1 6 THR A 206 ASN A 212 SITE 1 AC2 8 TYR A 33 GLY A 139 ASN A 140 HIS A 144 SITE 2 AC2 8 ASN A 193 TYR A 244 TYR A 285 GLU B 15 SITE 1 AC3 8 ARG B 53 GLN B 54 GLY B 56 GLY B 186 SITE 2 AC3 8 CYS B 187 VAL B 204 THR B 206 ASN B 212 SITE 1 AC4 4 GLN B 257 CYS B 264 GLN B 265 HIS B 266 SITE 1 AC5 2 LYS B 192 CYS B 284 SITE 1 AC6 10 TYR B 33 GLY B 139 ASN B 140 HIS B 144 SITE 2 AC6 10 ASN B 193 TYR B 222 TYR B 244 TYR B 285 SITE 3 AC6 10 HOH B2286 HOH B2320 CRYST1 75.840 83.230 114.880 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008705 0.00000