PDB Short entry for 1R8S HEADER PROTEIN TRANSPORT/EXCHANGE FACTOR 28-OCT-03 1R8S TITLE ARF1[DELTA1-17]-GDP IN COMPLEX WITH A SEC7 DOMAIN CARRYING THE TITLE 2 MUTATION OF THE CATALYTIC GLUTAMATE TO LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 18-181; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ARNO; COMPND 8 CHAIN: E; COMPND 9 FRAGMENT: SEC7 DOMAIN (RESIDUES 50-252); COMPND 10 SYNONYM: ARF NUCLEOTIDE-BINDING SITE OPENER, CYTOHESIN 2, ARF COMPND 11 EXCHANGE FACTOR; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: ARF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PSCD2, ARNO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE FACTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.RENAULT,B.GUIBERT,J.CHERFILS REVDAT 7 23-AUG-23 1R8S 1 REMARK REVDAT 6 27-OCT-21 1R8S 1 REMARK SEQADV REVDAT 5 11-OCT-17 1R8S 1 REMARK REVDAT 4 13-JUL-11 1R8S 1 VERSN REVDAT 3 24-FEB-09 1R8S 1 VERSN REVDAT 2 17-FEB-04 1R8S 3 ATOM REVDAT 1 20-JAN-04 1R8S 0 JRNL AUTH L.RENAULT,B.GUIBERT,J.CHERFILS JRNL TITL STRUCTURAL SNAPSHOTS OF THE MECHANISM AND INHIBITION OF A JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR JRNL REF NATURE V. 426 525 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 14654833 JRNL DOI 10.1038/NATURE02197 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 76 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2933 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2649 ; 0.018 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3964 ; 1.421 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6163 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3205 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 587 ; 0.022 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 640 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3089 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1525 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.560 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 0.881 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2797 ; 1.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 2.529 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 4.080 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 177 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9859 33.9145 -20.6461 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0973 REMARK 3 T33: 0.0423 T12: 0.0481 REMARK 3 T13: 0.0122 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.6202 L22: 1.1428 REMARK 3 L33: 0.6000 L12: -0.0866 REMARK 3 L13: -0.1480 L23: -0.3024 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.1156 S13: 0.0337 REMARK 3 S21: -0.0487 S22: -0.0395 S23: -0.0362 REMARK 3 S31: 0.0313 S32: -0.0300 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 62 E 248 REMARK 3 RESIDUE RANGE : E 501 E 501 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1217 17.6432 -0.7583 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0326 REMARK 3 T33: 0.0665 T12: 0.0325 REMARK 3 T13: 0.0029 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7195 L22: 0.5470 REMARK 3 L33: 0.5843 L12: -0.2528 REMARK 3 L13: -0.0402 L23: 0.1456 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.0116 S13: -0.0043 REMARK 3 S21: 0.0267 S22: 0.0055 S23: 0.0295 REMARK 3 S31: 0.0787 S32: -0.0078 S33: 0.0528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (MOLREP) REMARK 200 STARTING MODEL: PDB ENTRY 1R8R AND CRYSTAL STRUCTURE OF THE REMARK 200 ARF1[D1-17]/GEA2-SEC7 COMPLEX (GOLDBERG, J., (1998) CELL 95(2): REMARK 200 237-48) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.88M AMMONIUM SULFATE, 100MM MES, PH REMARK 280 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.18467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.09233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.09233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.18467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 178 REMARK 465 ASN A 179 REMARK 465 GLN A 180 REMARK 465 LYS A 181 REMARK 465 LEU E 50 REMARK 465 GLU E 51 REMARK 465 ALA E 52 REMARK 465 ASN E 53 REMARK 465 GLU E 54 REMARK 465 GLY E 55 REMARK 465 SER E 56 REMARK 465 LYS E 57 REMARK 465 THR E 58 REMARK 465 LEU E 59 REMARK 465 GLN E 60 REMARK 465 ARG E 61 REMARK 465 ASP E 249 REMARK 465 GLY E 250 REMARK 465 ASN E 251 REMARK 465 ASP E 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 147 O HOH A 531 2.11 REMARK 500 O HOH E 631 O HOH E 671 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN A 175 O ASN A 175 4554 0.97 REMARK 500 O HOH A 626 O HOH E 696 3664 1.98 REMARK 500 C ASN A 175 O ASN A 175 4554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 22 SD MET A 22 CE -0.421 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 22 CG - SD - CE ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 75 97.92 -162.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO3 E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT E 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R8M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ISOLATED ARNO-SEC7[F190Y/A191S/S198D/P208M] REMARK 900 RELATED ID: 1R8Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ABORTIVE ARF1/GDP/MG/AFB/ARNO-SEC7[F190Y/ REMARK 900 A191S/S198D/P208M] COMPLEX REMARK 900 RELATED ID: 1R8R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ABORTIVE ARF1[D1-17]/GDP/MG/AFB/ARNO- REMARK 900 SEC7[F190Y/A191S/S198D/P208M] COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ENGINEERED MUTATIONS IN THE ARNO STRUCTURE REMARK 999 (F190Y, A191S, S198D, P208M) ARE BREFELDIN A- REMARK 999 SENSITIZING MUTATIONS. DBREF 1R8S A 18 181 UNP P84080 ARF1_BOVIN 17 180 DBREF 1R8S E 50 252 UNP Q99418 CYH2_HUMAN 50 252 SEQADV 1R8S LYS E 156 UNP Q99418 GLU 156 ENGINEERED MUTATION SEQADV 1R8S TYR E 190 UNP Q99418 PHE 190 ENGINEERED MUTATION SEQADV 1R8S SER E 191 UNP Q99418 ALA 191 ENGINEERED MUTATION SEQADV 1R8S ASP E 198 UNP Q99418 SER 198 ENGINEERED MUTATION SEQADV 1R8S MET E 208 UNP Q99418 PRO 208 ENGINEERED MUTATION SEQRES 1 A 164 MET ARG ILE LEU MET VAL GLY LEU ASP ALA ALA GLY LYS SEQRES 2 A 164 THR THR ILE LEU TYR LYS LEU LYS LEU GLY GLU ILE VAL SEQRES 3 A 164 THR THR ILE PRO THR ILE GLY PHE ASN VAL GLU THR VAL SEQRES 4 A 164 GLU TYR LYS ASN ILE SER PHE THR VAL TRP ASP VAL GLY SEQRES 5 A 164 GLY GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR PHE SEQRES 6 A 164 GLN ASN THR GLN GLY LEU ILE PHE VAL VAL ASP SER ASN SEQRES 7 A 164 ASP ARG GLU ARG VAL ASN GLU ALA ARG GLU GLU LEU MET SEQRES 8 A 164 ARG MET LEU ALA GLU ASP GLU LEU ARG ASP ALA VAL LEU SEQRES 9 A 164 LEU VAL PHE ALA ASN LYS GLN ASP LEU PRO ASN ALA MET SEQRES 10 A 164 ASN ALA ALA GLU ILE THR ASP LYS LEU GLY LEU HIS SER SEQRES 11 A 164 LEU ARG HIS ARG ASN TRP TYR ILE GLN ALA THR CYS ALA SEQRES 12 A 164 THR SER GLY ASP GLY LEU TYR GLU GLY LEU ASP TRP LEU SEQRES 13 A 164 SER ASN GLN LEU ARG ASN GLN LYS SEQRES 1 E 203 LEU GLU ALA ASN GLU GLY SER LYS THR LEU GLN ARG ASN SEQRES 2 E 203 ARG LYS MET ALA MET GLY ARG LYS LYS PHE ASN MET ASP SEQRES 3 E 203 PRO LYS LYS GLY ILE GLN PHE LEU VAL GLU ASN GLU LEU SEQRES 4 E 203 LEU GLN ASN THR PRO GLU GLU ILE ALA ARG PHE LEU TYR SEQRES 5 E 203 LYS GLY GLU GLY LEU ASN LYS THR ALA ILE GLY ASP TYR SEQRES 6 E 203 LEU GLY GLU ARG GLU GLU LEU ASN LEU ALA VAL LEU HIS SEQRES 7 E 203 ALA PHE VAL ASP LEU HIS GLU PHE THR ASP LEU ASN LEU SEQRES 8 E 203 VAL GLN ALA LEU ARG GLN PHE LEU TRP SER PHE ARG LEU SEQRES 9 E 203 PRO GLY LYS ALA GLN LYS ILE ASP ARG MET MET GLU ALA SEQRES 10 E 203 PHE ALA GLN ARG TYR CYS LEU CYS ASN PRO GLY VAL PHE SEQRES 11 E 203 GLN SER THR ASP THR CYS TYR VAL LEU SER TYR SER VAL SEQRES 12 E 203 ILE MET LEU ASN THR ASP LEU HIS ASN PRO ASN VAL ARG SEQRES 13 E 203 ASP LYS MET GLY LEU GLU ARG PHE VAL ALA MET ASN ARG SEQRES 14 E 203 GLY ILE ASN GLU GLY GLY ASP LEU PRO GLU GLU LEU LEU SEQRES 15 E 203 ARG ASN LEU TYR ASP SER ILE ARG ASN GLU PRO PHE LYS SEQRES 16 E 203 ILE PRO GLU ASP ASP GLY ASN ASP HET GDP A 401 28 HET BME A 506 4 HET FMT A 503 3 HET FMT A 504 3 HET SO4 E 501 5 HET SO3 E 502 4 HET FMT E 505 3 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL HETNAM FMT FORMIC ACID HETNAM SO4 SULFATE ION HETNAM SO3 SULFITE ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 BME C2 H6 O S FORMUL 5 FMT 3(C H2 O2) FORMUL 7 SO4 O4 S 2- FORMUL 8 SO3 O3 S 2- FORMUL 10 HOH *350(H2 O) HELIX 1 1 GLY A 29 GLU A 41 1 13 HELIX 2 2 GLN A 71 LYS A 73 5 3 HELIX 3 3 ILE A 74 PHE A 82 1 9 HELIX 4 4 ASP A 96 GLU A 98 5 3 HELIX 5 5 ARG A 99 ALA A 112 1 14 HELIX 6 6 GLU A 113 ARG A 117 5 5 HELIX 7 7 ASN A 135 LEU A 143 1 9 HELIX 8 8 GLY A 144 LEU A 148 5 5 HELIX 9 9 GLY A 165 LEU A 177 1 13 HELIX 10 10 ASN E 62 ASP E 75 1 14 HELIX 11 11 ASP E 75 ASN E 86 1 12 HELIX 12 12 THR E 92 GLY E 103 1 12 HELIX 13 13 ASN E 107 GLY E 116 1 10 HELIX 14 14 GLU E 119 LEU E 132 1 14 HELIX 15 15 ASN E 139 SER E 150 1 12 HELIX 16 16 LYS E 156 ASN E 175 1 20 HELIX 17 17 SER E 181 ASN E 201 1 21 HELIX 18 18 GLY E 209 ASN E 217 1 9 HELIX 19 19 PRO E 227 GLU E 241 1 15 SHEET 1 A 6 VAL A 53 GLU A 57 0 SHEET 2 A 6 SER A 62 ASP A 67 -1 O VAL A 65 N GLU A 54 SHEET 3 A 6 ARG A 19 VAL A 23 1 N ILE A 20 O THR A 64 SHEET 4 A 6 GLY A 87 ASP A 93 1 O VAL A 91 N VAL A 23 SHEET 5 A 6 VAL A 120 ASN A 126 1 O LEU A 122 N LEU A 88 SHEET 6 A 6 TRP A 153 ALA A 157 1 O GLN A 156 N VAL A 123 SITE 1 AC1 8 HOH A 538 GLY E 116 ARG E 118 LYS E 156 SITE 2 AC1 8 GLN E 158 LYS E 159 ARG E 162 HOH E 564 SITE 1 AC2 4 ASN A 52 PRO E 154 GLY E 155 LYS E 156 SITE 1 AC3 21 ALA A 27 ALA A 28 GLY A 29 LYS A 30 SITE 2 AC3 21 THR A 31 THR A 32 ASN A 126 LYS A 127 SITE 3 AC3 21 ASP A 129 LEU A 130 CYS A 159 ALA A 160 SITE 4 AC3 21 HOH A 521 HOH A 532 HOH A 538 HOH A 542 SITE 5 AC3 21 HOH A 546 HOH A 550 HOH A 566 HOH A 648 SITE 6 AC3 21 LYS E 156 SITE 1 AC4 2 ARG A 19 HOH A 610 SITE 1 AC5 3 ARG A 149 HIS A 150 ARG A 151 SITE 1 AC6 1 ARG A 79 SITE 1 AC7 2 ASN E 139 SER E 237 CRYST1 104.018 104.018 69.277 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009614 0.005550 0.000000 0.00000 SCALE2 0.000000 0.011101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014435 0.00000