PDB Short entry for 1RDW HEADER STRUCTURAL PROTEIN 06-NOV-03 1RDW TITLE ACTIN CRYSTAL DYNAMICS: STRUCTURAL IMPLICATIONS FOR F-ACTIN TITLE 2 NUCLEATION, POLYMERIZATION AND BRANCHING MEDIATED BY THE ANTI- TITLE 3 PARALLEL DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: ACTIN; COMPND 5 SYNONYM: ALPHA-ACTIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 GENE: ACTA1, ACTA KEYWDS ANTI-PARALLEL DIMER, POLYMERIZATION, NUCLEATION, FILAMENT, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.REUTZEL,C.YOSHIOKA,L.GOVINDASAMY,E.G.YARMOLA,M.AGBANDJE-MCKENNA, AUTHOR 2 M.R.BUBB,R.MCKENNA REVDAT 4 23-AUG-23 1RDW 1 REMARK LINK REVDAT 3 24-FEB-09 1RDW 1 VERSN REVDAT 2 25-MAY-04 1RDW 1 JRNL REVDAT 1 16-DEC-03 1RDW 0 JRNL AUTH R.REUTZEL,C.YOSHIOKA,L.GOVINDASAMY,E.G.YARMOLA, JRNL AUTH 2 M.AGBANDJE-MCKENNA,M.R.BUBB,R.MCKENNA JRNL TITL ACTIN CRYSTAL DYNAMICS: STRUCTURAL IMPLICATIONS FOR F-ACTIN JRNL TITL 2 NUCLEATION, POLYMERIZATION, AND BRANCHING MEDIATED BY THE JRNL TITL 3 ANTI-PARALLEL DIMER. JRNL REF J.STRUCT.BIOL. V. 146 291 2004 JRNL REFN ISSN 1047-8477 JRNL PMID 15099571 JRNL DOI 10.1016/J.JSB.2003.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CUKALPHA REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, NH4SO4, PH 6.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.93550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.45850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.45850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.90325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.45850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.45850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.96775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.45850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.45850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.90325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.45850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.45850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.96775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.93550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP X 1 REMARK 465 GLU X 2 REMARK 465 ASP X 3 REMARK 465 GLU X 4 REMARK 465 GLN X 41 REMARK 465 GLY X 42 REMARK 465 VAL X 43 REMARK 465 MET X 44 REMARK 465 VAL X 45 REMARK 465 GLY X 46 REMARK 465 MET X 47 REMARK 465 GLY X 48 REMARK 465 GLN X 49 REMARK 465 LYS X 50 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN X 12 O HOH X 421 2.04 REMARK 500 N GLU X 195 O HOH X 501 2.04 REMARK 500 O HOH X 430 O HOH X 431 2.10 REMARK 500 C THR X 194 O HOH X 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR X 53 CD1 TYR X 53 CE1 0.097 REMARK 500 GLU X 57 CD GLU X 57 OE2 0.092 REMARK 500 LYS X 68 CD LYS X 68 CE 0.169 REMARK 500 GLU X 72 CD GLU X 72 OE1 0.082 REMARK 500 LYS X 118 CD LYS X 118 CE 0.155 REMARK 500 MET X 119 CG MET X 119 SD 0.159 REMARK 500 GLU X 276 CD GLU X 276 OE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 11 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP X 24 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG X 37 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP X 56 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP X 56 CB - CG - OD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 GLU X 99 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP X 154 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 VAL X 159 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 VAL X 159 CG1 - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP X 187 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG X 210 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG X 210 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP X 288 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 MET X 299 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 57 -73.93 -4.47 REMARK 500 ALA X 131 141.51 -174.33 REMARK 500 ALA X 181 -156.43 -133.74 REMARK 500 THR X 194 59.20 -94.62 REMARK 500 VAL X 201 -33.72 -143.60 REMARK 500 ASN X 225 -36.90 -37.54 REMARK 500 ALA X 231 47.77 -101.31 REMARK 500 SER X 232 -5.18 -162.50 REMARK 500 SER X 233 143.13 -177.14 REMARK 500 ASN X 296 57.62 -145.15 REMARK 500 CYS X 374 -2.30 84.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY X 55 ASP X 56 -131.12 REMARK 500 ASP X 56 GLU X 57 126.25 REMARK 500 SER X 199 PHE X 200 126.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 392 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP X 390 O3G REMARK 620 2 ATP X 390 O2B 81.0 REMARK 620 3 HOH X 423 O 132.2 95.7 REMARK 620 4 HOH X 424 O 90.9 169.8 94.4 REMARK 620 5 HOH X 425 O 74.9 91.7 152.7 80.0 REMARK 620 6 HOH X 426 O 153.3 83.0 70.5 102.1 84.4 REMARK 620 7 HOH X 472 O 79.4 98.1 53.7 86.5 150.6 124.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP X 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAR X 391 DBREF 1RDW X 1 375 UNP P68135 ACTS_RABIT 3 377 SEQRES 1 X 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 X 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 X 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 X 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 X 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 X 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 X 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 X 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 X 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 X 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 X 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 X 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 X 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 X 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 X 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 X 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 X 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 X 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 X 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 X 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 X 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 X 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 X 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 X 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 X 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 X 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 X 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 X 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 X 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE HET MG X 392 1 HET MG X 393 1 HET ATP X 390 31 HET LAR X 391 29 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM LAR LATRUNCULIN A HETSYN LAR 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16- HETSYN 2 LAR DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2- HETSYN 3 LAR THIAZOLIDINONE FORMUL 2 MG 2(MG 2+) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 LAR C22 H31 N O5 S FORMUL 6 HOH *113(H2 O) HELIX 1 1 GLY X 55 LYS X 61 1 7 HELIX 2 2 ASN X 78 ASN X 92 1 15 HELIX 3 3 ALA X 97 HIS X 101 5 5 HELIX 4 4 PRO X 112 THR X 126 1 15 HELIX 5 5 GLN X 137 SER X 145 1 9 HELIX 6 6 PRO X 172 ILE X 175 5 4 HELIX 7 7 ALA X 181 THR X 194 1 14 HELIX 8 8 THR X 202 CYS X 217 1 16 HELIX 9 9 ASP X 222 ALA X 231 1 10 HELIX 10 10 SER X 233 GLU X 237 5 5 HELIX 11 11 ASN X 252 THR X 260 1 9 HELIX 12 12 LEU X 261 PHE X 262 5 2 HELIX 13 13 GLN X 263 GLY X 268 5 6 HELIX 14 14 GLY X 273 MET X 283 1 11 HELIX 15 15 ASP X 286 ALA X 295 1 10 HELIX 16 16 GLY X 301 TYR X 306 5 6 HELIX 17 17 GLY X 308 ALA X 321 1 14 HELIX 18 18 TYR X 337 LEU X 349 1 13 HELIX 19 19 SER X 350 MET X 355 5 6 HELIX 20 20 LYS X 359 GLY X 366 1 8 HELIX 21 21 PRO X 367 ARG X 372 5 6 SHEET 1 A 6 ALA X 29 PRO X 32 0 SHEET 2 A 6 LEU X 16 PHE X 21 -1 N VAL X 17 O PHE X 31 SHEET 3 A 6 LEU X 8 ASN X 12 -1 N ASP X 11 O LYS X 18 SHEET 4 A 6 THR X 103 GLU X 107 1 O LEU X 104 N LEU X 8 SHEET 5 A 6 ALA X 131 ILE X 136 1 O TYR X 133 N LEU X 105 SHEET 6 A 6 ILE X 357 THR X 358 -1 O ILE X 357 N MET X 132 SHEET 1 B 3 TYR X 53 VAL X 54 0 SHEET 2 B 3 VAL X 35 PRO X 38 -1 N GLY X 36 O TYR X 53 SHEET 3 B 3 LEU X 65 LYS X 68 -1 O LYS X 68 N VAL X 35 SHEET 1 C 2 ILE X 71 GLU X 72 0 SHEET 2 C 2 ILE X 75 ILE X 76 -1 O ILE X 75 N GLU X 72 SHEET 1 D 3 TYR X 169 ALA X 170 0 SHEET 2 D 3 THR X 160 TYR X 166 -1 N TYR X 166 O TYR X 169 SHEET 3 D 3 MET X 176 LEU X 178 -1 O LEU X 178 N THR X 160 SHEET 1 E 5 TYR X 169 ALA X 170 0 SHEET 2 E 5 THR X 160 TYR X 166 -1 N TYR X 166 O TYR X 169 SHEET 3 E 5 GLY X 150 SER X 155 -1 N GLY X 150 O ILE X 165 SHEET 4 E 5 ASN X 297 SER X 300 1 O SER X 300 N LEU X 153 SHEET 5 E 5 ILE X 329 ILE X 330 1 O ILE X 330 N ASN X 297 SHEET 1 F 2 LYS X 238 GLU X 241 0 SHEET 2 F 2 VAL X 247 ILE X 250 -1 O ILE X 250 N LYS X 238 LINK O3G ATP X 390 MG MG X 392 1555 1555 2.28 LINK O2B ATP X 390 MG MG X 392 1555 1555 2.17 LINK MG MG X 392 O HOH X 423 1555 1555 2.28 LINK MG MG X 392 O HOH X 424 1555 1555 2.25 LINK MG MG X 392 O HOH X 425 1555 1555 2.22 LINK MG MG X 392 O HOH X 426 1555 1555 2.30 LINK MG MG X 392 O HOH X 472 1555 1555 2.93 SITE 1 AC1 6 ATP X 390 HOH X 423 HOH X 424 HOH X 425 SITE 2 AC1 6 HOH X 426 HOH X 472 SITE 1 AC2 28 GLY X 13 SER X 14 GLY X 15 LEU X 16 SITE 2 AC2 28 LYS X 18 GLY X 156 ASP X 157 GLY X 158 SITE 3 AC2 28 VAL X 159 GLY X 182 ARG X 210 LYS X 213 SITE 4 AC2 28 GLU X 214 GLY X 301 GLY X 302 THR X 303 SITE 5 AC2 28 MET X 305 TYR X 306 LAR X 391 MG X 392 SITE 6 AC2 28 HOH X 401 HOH X 404 HOH X 419 HOH X 425 SITE 7 AC2 28 HOH X 426 HOH X 440 HOH X 460 HOH X 472 SITE 1 AC3 13 GLY X 15 LEU X 16 GLN X 59 TYR X 69 SITE 2 AC3 13 ASP X 157 ARG X 183 THR X 186 ARG X 206 SITE 3 AC3 13 GLU X 207 ARG X 210 LYS X 213 ATP X 390 SITE 4 AC3 13 HOH X 474 CRYST1 100.917 100.917 103.871 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009627 0.00000