PDB Short entry for 1RGD HEADER DNA BINDING PROTEIN 06-JAN-95 1RGD TITLE STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN TITLE 2 FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116 KEYWDS DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR M.A.A.VAN TILBORG,A.M.J.J.BONVIN,K.HARD,A.DAVIS,B.MALER,R.BOELENS, AUTHOR 2 K.R.YAMAMOTO,R.KAPTEIN REVDAT 3 02-MAR-22 1RGD 1 KEYWDS REMARK LINK REVDAT 2 24-FEB-09 1RGD 1 VERSN REVDAT 1 14-FEB-95 1RGD 0 JRNL AUTH M.A.VAN TILBORG,A.M.BONVIN,K.HARD,A.L.DAVIS,B.MALER, JRNL AUTH 2 R.BOELENS,K.R.YAMAMOTO,R.KAPTEIN JRNL TITL STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA JRNL TITL 2 BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX JRNL TITL 3 CALCULATIONS. JRNL REF J.MOL.BIOL. V. 247 689 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7723024 JRNL DOI 10.1006/JMBI.1995.0173 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO, REMARK 1 AUTH 2 P.B.SIGLER REMARK 1 TITL CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE REMARK 1 TITL 2 GLUCOCORTICOID RECEPTOR WITH DNA REMARK 1 REF NATURE V. 352 497 1991 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.HARD,E.KELLENBACH,R.BOELENS,B.A.MALER,K.DAHLMAN, REMARK 1 AUTH 2 L.P.FREEDMAN,J.CARLSTEDT-DUKE,K.R.YAMAMOTO,J.-A.GUSTAFSSON, REMARK 1 AUTH 3 R.KAPTEIN REMARK 1 TITL SOLUTION STRUCTURE OF THE GLUCOCORTICOID RECEPTOR REMARK 1 TITL 2 DNA-BINDING DOMAIN REMARK 1 REF SCIENCE V. 249 157 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.HARD,E.KELLENBACH,R.BOELENS,R.KAPTEIN,K.DAHLMAN, REMARK 1 AUTH 2 J.CARLSTEDT-DUKE,L.P.FREEDMAN,B.A.MALER,E.HYDE, REMARK 1 AUTH 3 J.-A.GUSTAFSSON,K.R.YAMAMOTO REMARK 1 TITL 1H NMR STUDIES OF THE GLUCOCORTICOID RECEPTOR DNA-BINDING REMARK 1 TITL 2 DOMAIN: SEQUENTIAL ASSIGNMENTS AND IDENTIFICATION OF REMARK 1 TITL 3 SECONDARY STRUCTURE ELEMENTS REMARK 1 REF BIOCHEMISTRY V. 29 9015 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : IRMA, DINOSAUR REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RGD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176072. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 CYS A 56 CA CYS A 56 CB -0.083 REMARK 500 3 CYS A 1 CA CYS A 1 CB -0.085 REMARK 500 3 LYS A 26 CA LYS A 26 CB -0.162 REMARK 500 4 LYS A 26 CA LYS A 26 CB -0.151 REMARK 500 5 CYS A 1 CA CYS A 1 CB -0.111 REMARK 500 5 LYS A 26 CA LYS A 26 CB -0.168 REMARK 500 6 LYS A 26 CA LYS A 26 CB -0.154 REMARK 500 6 CYS A 43 CA CYS A 43 CB -0.079 REMARK 500 7 CYS A 1 CA CYS A 1 CB -0.090 REMARK 500 7 LYS A 26 CA LYS A 26 CB -0.183 REMARK 500 10 CYS A 56 CA CYS A 56 CB -0.081 REMARK 500 11 LYS A 26 CA LYS A 26 CB -0.134 REMARK 500 11 CYS A 56 CA CYS A 56 CB -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 1 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 1 CYS A 1 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 1 LEU A 2 CA - CB - CG ANGL. DEV. = -24.6 DEGREES REMARK 500 1 VAL A 3 CA - CB - CG1 ANGL. DEV. = 15.7 DEGREES REMARK 500 1 CYS A 4 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 1 GLU A 7 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 1 ALA A 8 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 1 TYR A 13 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 1 TYR A 13 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 VAL A 15 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 1 CYS A 18 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 1 PHE A 24 CB - CG - CD2 ANGL. DEV. = -16.6 DEGREES REMARK 500 1 VAL A 29 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 1 VAL A 29 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 1 HIS A 33 CB - CG - CD2 ANGL. DEV. = -14.1 DEGREES REMARK 500 1 TYR A 35 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 1 TYR A 35 CB - CG - CD2 ANGL. DEV. = -19.8 DEGREES REMARK 500 1 TYR A 35 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 TYR A 35 CG - CD1 - CE1 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 ARG A 40 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 1 CYS A 43 CB - CA - C ANGL. DEV. = 11.0 DEGREES REMARK 500 1 CYS A 43 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 1 GLN A 63 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 2 CYS A 1 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 2 CYS A 1 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 2 LEU A 2 CA - CB - CG ANGL. DEV. = -23.8 DEGREES REMARK 500 2 VAL A 3 CA - CB - CG1 ANGL. DEV. = 18.7 DEGREES REMARK 500 2 CYS A 4 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 2 GLU A 7 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 2 ALA A 8 N - CA - CB ANGL. DEV. = -17.2 DEGREES REMARK 500 2 TYR A 13 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 2 TYR A 13 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 2 TYR A 13 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 2 TYR A 13 CB - CG - CD1 ANGL. DEV. = -17.8 DEGREES REMARK 500 2 TYR A 13 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 TYR A 13 CD1 - CE1 - CZ ANGL. DEV. = -5.7 DEGREES REMARK 500 2 VAL A 15 CB - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 2 PHE A 24 CB - CG - CD2 ANGL. DEV. = -17.8 DEGREES REMARK 500 2 PHE A 25 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 LYS A 26 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 2 LYS A 26 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 2 HIS A 33 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 2 TYR A 35 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 2 TYR A 35 CB - CG - CD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 2 CYS A 43 CB - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 2 CYS A 43 CA - CB - SG ANGL. DEV. = 10.7 DEGREES REMARK 500 2 ILE A 44 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 2 ASP A 46 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 2 CYS A 56 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 2 CYS A 56 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 306 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 -74.95 -102.72 REMARK 500 1 SER A 5 12.51 87.00 REMARK 500 1 GLU A 7 124.55 -18.46 REMARK 500 1 CYS A 11 -168.38 48.62 REMARK 500 1 ASN A 34 116.56 73.55 REMARK 500 1 TYR A 35 72.89 -119.48 REMARK 500 1 LEU A 36 55.37 -69.52 REMARK 500 1 CYS A 37 179.63 38.41 REMARK 500 1 ALA A 38 20.26 -77.53 REMARK 500 1 ARG A 40 73.45 -116.03 REMARK 500 1 ASN A 41 65.61 16.46 REMARK 500 1 ASP A 42 70.07 69.21 REMARK 500 1 ASP A 46 -153.39 -140.39 REMARK 500 1 LYS A 47 -37.21 25.65 REMARK 500 1 ARG A 49 61.01 65.25 REMARK 500 1 CYS A 53 96.88 -175.78 REMARK 500 1 LEU A 68 -81.09 -9.40 REMARK 500 1 ALA A 70 82.92 18.13 REMARK 500 2 VAL A 3 -74.41 -95.42 REMARK 500 2 GLU A 7 134.56 -8.47 REMARK 500 2 CYS A 11 -73.66 142.96 REMARK 500 2 VAL A 15 140.38 -36.53 REMARK 500 2 LYS A 26 -74.60 -38.79 REMARK 500 2 LEU A 36 -101.70 70.40 REMARK 500 2 CYS A 37 80.79 -24.28 REMARK 500 2 ARG A 40 -89.73 -99.50 REMARK 500 2 ASN A 41 -12.12 89.70 REMARK 500 2 ILE A 44 86.02 -59.03 REMARK 500 2 ILE A 45 23.62 -70.04 REMARK 500 2 LYS A 47 -3.73 -57.07 REMARK 500 2 ARG A 49 -93.88 -124.83 REMARK 500 2 LYS A 51 -32.62 -147.32 REMARK 500 2 GLU A 69 47.68 -93.03 REMARK 500 2 ALA A 70 -58.03 63.86 REMARK 500 3 VAL A 3 -72.14 -95.79 REMARK 500 3 SER A 5 -9.01 81.34 REMARK 500 3 GLU A 7 140.64 -9.99 REMARK 500 3 CYS A 11 -76.34 61.08 REMARK 500 3 TYR A 13 -22.02 111.93 REMARK 500 3 LEU A 16 58.67 -68.77 REMARK 500 3 LEU A 36 112.01 62.02 REMARK 500 3 ALA A 38 17.87 56.50 REMARK 500 3 ASN A 41 56.13 -98.93 REMARK 500 3 ILE A 45 -43.87 80.42 REMARK 500 3 LYS A 47 -17.83 -33.72 REMARK 500 3 ARG A 50 167.75 91.88 REMARK 500 3 LYS A 51 81.15 -61.06 REMARK 500 3 ASN A 52 -66.95 -93.83 REMARK 500 3 LEU A 68 -8.17 -43.47 REMARK 500 3 ALA A 70 124.24 -30.56 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 13 0.24 SIDE CHAIN REMARK 500 1 PHE A 24 0.21 SIDE CHAIN REMARK 500 1 TYR A 35 0.18 SIDE CHAIN REMARK 500 1 TYR A 58 0.07 SIDE CHAIN REMARK 500 2 PHE A 24 0.25 SIDE CHAIN REMARK 500 2 TYR A 35 0.10 SIDE CHAIN REMARK 500 2 TYR A 58 0.09 SIDE CHAIN REMARK 500 3 TYR A 13 0.12 SIDE CHAIN REMARK 500 3 PHE A 24 0.30 SIDE CHAIN REMARK 500 3 TYR A 35 0.14 SIDE CHAIN REMARK 500 4 PHE A 24 0.26 SIDE CHAIN REMARK 500 4 TYR A 35 0.12 SIDE CHAIN REMARK 500 5 TYR A 13 0.13 SIDE CHAIN REMARK 500 5 PHE A 24 0.27 SIDE CHAIN REMARK 500 5 TYR A 35 0.12 SIDE CHAIN REMARK 500 5 TYR A 58 0.12 SIDE CHAIN REMARK 500 6 TYR A 13 0.09 SIDE CHAIN REMARK 500 6 PHE A 24 0.28 SIDE CHAIN REMARK 500 6 TYR A 35 0.13 SIDE CHAIN REMARK 500 6 TYR A 58 0.08 SIDE CHAIN REMARK 500 7 PHE A 24 0.27 SIDE CHAIN REMARK 500 7 TYR A 35 0.10 SIDE CHAIN REMARK 500 8 TYR A 13 0.06 SIDE CHAIN REMARK 500 8 PHE A 24 0.27 SIDE CHAIN REMARK 500 8 PHE A 25 0.13 SIDE CHAIN REMARK 500 8 TYR A 35 0.10 SIDE CHAIN REMARK 500 8 TYR A 58 0.09 SIDE CHAIN REMARK 500 9 TYR A 13 0.13 SIDE CHAIN REMARK 500 9 PHE A 24 0.27 SIDE CHAIN REMARK 500 9 TYR A 35 0.10 SIDE CHAIN REMARK 500 9 ARG A 50 0.08 SIDE CHAIN REMARK 500 10 PHE A 24 0.07 SIDE CHAIN REMARK 500 10 TYR A 35 0.10 SIDE CHAIN REMARK 500 11 TYR A 13 0.20 SIDE CHAIN REMARK 500 11 PHE A 24 0.10 SIDE CHAIN REMARK 500 11 TYR A 35 0.23 SIDE CHAIN REMARK 500 11 ARG A 71 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ASP A 6 11.18 REMARK 500 1 GLU A 7 10.50 REMARK 500 1 VAL A 15 -14.65 REMARK 500 1 LEU A 16 11.06 REMARK 500 1 SER A 20 -12.83 REMARK 500 1 PHE A 25 -14.57 REMARK 500 1 VAL A 29 10.74 REMARK 500 1 CYS A 37 10.91 REMARK 500 1 GLY A 39 -12.64 REMARK 500 1 ARG A 40 18.56 REMARK 500 1 ASN A 41 12.71 REMARK 500 1 CYS A 43 12.52 REMARK 500 1 ILE A 45 -15.95 REMARK 500 1 ASP A 46 -13.32 REMARK 500 1 ALA A 55 -11.52 REMARK 500 1 ARG A 57 -11.41 REMARK 500 1 ARG A 59 -12.69 REMARK 500 1 CYS A 61 -15.04 REMARK 500 1 ALA A 64 10.31 REMARK 500 1 GLU A 69 11.07 REMARK 500 2 SER A 5 -11.41 REMARK 500 2 SER A 20 -11.29 REMARK 500 2 PHE A 24 -14.08 REMARK 500 2 PHE A 25 -11.25 REMARK 500 2 ALA A 28 -10.72 REMARK 500 2 ARG A 40 16.04 REMARK 500 2 CYS A 43 12.25 REMARK 500 2 ALA A 55 -15.29 REMARK 500 2 ARG A 57 -11.29 REMARK 500 2 ARG A 59 -13.22 REMARK 500 2 CYS A 61 -14.88 REMARK 500 2 ALA A 64 11.01 REMARK 500 3 CYS A 4 10.55 REMARK 500 3 ASP A 6 11.54 REMARK 500 3 TYR A 13 11.00 REMARK 500 3 SER A 20 -11.03 REMARK 500 3 LYS A 22 -10.15 REMARK 500 3 PHE A 25 -12.50 REMARK 500 3 ARG A 40 -13.98 REMARK 500 3 ILE A 44 14.79 REMARK 500 3 ARG A 49 12.99 REMARK 500 3 ARG A 50 10.10 REMARK 500 3 ARG A 57 -16.45 REMARK 500 3 ARG A 59 -12.88 REMARK 500 3 CYS A 61 -16.87 REMARK 500 3 ALA A 64 11.37 REMARK 500 3 LEU A 68 -10.31 REMARK 500 3 GLU A 69 11.80 REMARK 500 4 SER A 5 -14.50 REMARK 500 4 ASP A 6 10.08 REMARK 500 REMARK 500 THIS ENTRY HAS 173 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 72 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 1 SG REMARK 620 2 CYS A 4 SG 89.0 REMARK 620 3 CYS A 18 SG 133.0 107.4 REMARK 620 4 CYS A 21 SG 110.2 137.5 87.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 73 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 43 SG 129.4 REMARK 620 3 CYS A 53 SG 93.5 108.1 REMARK 620 4 CYS A 56 SG 105.8 90.3 135.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 73 DBREF 1RGD A 1 71 UNP P06536 GCR_RAT 440 510 SEQRES 1 A 71 CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS HIS TYR SEQRES 2 A 71 GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE PHE LYS SEQRES 3 A 71 ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS ALA GLY SEQRES 4 A 71 ARG ASN ASP CYS ILE ILE ASP LYS ILE ARG ARG LYS ASN SEQRES 5 A 71 CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN ALA GLY SEQRES 6 A 71 MET ASN LEU GLU ALA ARG HET ZN A 72 1 HET ZN A 73 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLY A 19 GLU A 30 1 12 HELIX 2 2 PRO A 54 ALA A 64 1 11 LINK SG CYS A 1 ZN ZN A 72 1555 1555 2.42 LINK SG CYS A 4 ZN ZN A 72 1555 1555 2.57 LINK SG CYS A 18 ZN ZN A 72 1555 1555 2.29 LINK SG CYS A 21 ZN ZN A 72 1555 1555 2.61 LINK SG CYS A 37 ZN ZN A 73 1555 1555 2.50 LINK SG CYS A 43 ZN ZN A 73 1555 1555 2.50 LINK SG CYS A 53 ZN ZN A 73 1555 1555 2.87 LINK SG CYS A 56 ZN ZN A 73 1555 1555 2.74 SITE 1 AC1 5 CYS A 1 CYS A 4 CYS A 18 CYS A 21 SITE 2 AC1 5 ARG A 57 SITE 1 AC2 4 CYS A 37 CYS A 43 CYS A 53 CYS A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000