PDB Short entry for 1RGP HEADER G-PROTEIN 05-DEC-96 1RGP TITLE GTPASE-ACTIVATION DOMAIN FROM RHOGAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOGAP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTPASE ACTIVATION DOMAIN; COMPND 5 SYNONYM: CDC42 GTPASE-ACTIVATING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS G-PROTEIN, GAP, SIGNAL-TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BARRETT,B.XIAO,E.J.DODSON,G.DODSON,S.B.LUDBROOK,K.NURMAHOMED, AUTHOR 2 S.J.GAMBLIN,A.MUSACCHIO,S.J.SMERDON,J.F.ECCLESTON REVDAT 3 14-FEB-24 1RGP 1 REMARK REVDAT 2 24-FEB-09 1RGP 1 VERSN REVDAT 1 15-OCT-97 1RGP 0 JRNL AUTH T.BARRETT,B.XIAO,E.J.DODSON,G.DODSON,S.B.LUDBROOK, JRNL AUTH 2 K.NURMAHOMED,S.J.GAMBLIN,A.MUSACCHIO,S.J.SMERDON, JRNL AUTH 3 J.F.ECCLESTON JRNL TITL THE STRUCTURE OF THE GTPASE-ACTIVATING DOMAIN FROM JRNL TITL 2 P50RHOGAP. JRNL REF NATURE V. 385 458 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9009196 JRNL DOI 10.1038/385458A0 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR/MAD REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6K, 5% MPD IN 0.1M HEPES PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.04300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.60250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.04300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.60250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.04300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.04300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 TYR A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 PHE A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 GLN A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 PRO A 33 REMARK 465 MET A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 206 REMARK 465 LYS A 207 REMARK 465 ASP A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 ILE A 211 REMARK 465 THR A 212 REMARK 465 LEU A 213 REMARK 465 LYS A 214 REMARK 465 ALA A 215 REMARK 465 PRO A 235 REMARK 465 SER A 236 REMARK 465 PRO A 237 REMARK 465 ASP A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 GLY A 241 REMARK 465 LEU A 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 57 CG CD REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 THR A 134 OG1 CG2 REMARK 470 LEU A 204 CG CD1 CD2 REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 ASN A 217 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 190 O HOH A 263 0.64 REMARK 500 NH1 ARG A 37 O HOH A 485 1.44 REMARK 500 CD ARG A 37 O HOH A 485 1.73 REMARK 500 OD1 ASN A 146 O HOH A 416 1.73 REMARK 500 O PRO A 36 CD PRO A 38 1.74 REMARK 500 CA PRO A 36 N ARG A 37 1.78 REMARK 500 CG ASN A 146 O HOH A 416 1.88 REMARK 500 O HOH A 387 O HOH A 391 1.91 REMARK 500 CZ ARG A 37 O HOH A 485 1.95 REMARK 500 NE ARG A 37 O HOH A 485 2.01 REMARK 500 O TRP A 205 O HOH A 440 2.06 REMARK 500 O HOH A 272 O HOH A 449 2.07 REMARK 500 O HOH A 297 O HOH A 335 2.12 REMARK 500 ND2 ASN A 146 O HOH A 416 2.13 REMARK 500 O HOH A 355 O HOH A 429 2.13 REMARK 500 N LEU A 133 O HOH A 277 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N PRO A 38 O HOH A 358 2565 0.44 REMARK 500 CG PRO A 38 NE2 GLN A 158 2565 0.54 REMARK 500 CA ARG A 37 O HOH A 360 2565 0.56 REMARK 500 CB PRO A 36 O HOH A 390 2565 0.62 REMARK 500 C ARG A 37 O HOH A 358 2565 1.06 REMARK 500 CB PRO A 38 NE2 GLN A 158 2565 1.08 REMARK 500 CA PRO A 36 O HOH A 371 2565 1.20 REMARK 500 N ARG A 37 O HOH A 371 2565 1.22 REMARK 500 N ARG A 37 O HOH A 360 2565 1.24 REMARK 500 CG PRO A 36 O HOH A 390 2565 1.27 REMARK 500 CG PRO A 38 CD GLN A 158 2565 1.29 REMARK 500 C PRO A 36 O HOH A 371 2565 1.46 REMARK 500 CB ARG A 37 O HOH A 360 2565 1.51 REMARK 500 CA PRO A 36 O HOH A 390 2565 1.55 REMARK 500 OE1 GLN A 151 O HOH A 300 3644 1.58 REMARK 500 CD GLN A 151 O HOH A 300 3644 1.67 REMARK 500 CA PRO A 38 O HOH A 358 2565 1.75 REMARK 500 CD PRO A 38 O HOH A 358 2565 1.77 REMARK 500 CD PRO A 38 CD GLN A 158 2565 1.90 REMARK 500 CD PRO A 38 NE2 GLN A 158 2565 1.93 REMARK 500 O ARG A 37 O HOH A 358 2565 1.99 REMARK 500 C PRO A 36 O HOH A 360 2565 2.03 REMARK 500 N PRO A 36 O HOH A 390 2565 2.05 REMARK 500 C ARG A 37 O HOH A 360 2565 2.07 REMARK 500 CD PRO A 36 O HOH A 390 2565 2.08 REMARK 500 CB PRO A 38 CD GLN A 158 2565 2.09 REMARK 500 NE2 GLN A 151 O HOH A 300 3644 2.15 REMARK 500 CA ARG A 37 O HOH A 358 2565 2.18 REMARK 500 CG PRO A 38 CG GLN A 158 2565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 36 CA PRO A 36 C -0.255 REMARK 500 PRO A 36 C ARG A 37 N -0.172 REMARK 500 GLU A 166 CB GLU A 166 CG 0.144 REMARK 500 SER A 185 CA SER A 185 CB 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 36 CA - C - N ANGL. DEV. = -23.6 DEGREES REMARK 500 PRO A 36 O - C - N ANGL. DEV. = 24.1 DEGREES REMARK 500 ARG A 37 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 GLN A 50 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO A 57 N - CA - CB ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 67 CD - NE - CZ ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 67 NH1 - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 8.6 DEGREES REMARK 500 THR A 79 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 GLU A 81 CG - CD - OE1 ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 94 CD - NE - CZ ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE A 108 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASN A 112 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU A 113 CA - C - O ANGL. DEV. = 17.4 DEGREES REMARK 500 GLU A 113 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 114 C - N - CA ANGL. DEV. = 37.9 DEGREES REMARK 500 LEU A 121 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 THR A 123 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU A 132 O - C - N ANGL. DEV. = -17.2 DEGREES REMARK 500 LEU A 133 CA - C - O ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU A 133 CA - C - N ANGL. DEV. = 17.6 DEGREES REMARK 500 THR A 162 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 GLU A 166 CB - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 GLU A 166 OE1 - CD - OE2 ANGL. DEV. = -27.7 DEGREES REMARK 500 GLU A 166 CG - CD - OE1 ANGL. DEV. = 19.5 DEGREES REMARK 500 THR A 175 N - CA - CB ANGL. DEV. = -15.5 DEGREES REMARK 500 SER A 185 CA - CB - OG ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 65.39 -56.78 REMARK 500 PRO A 38 161.11 -44.87 REMARK 500 GLN A 43 129.77 -37.23 REMARK 500 PHE A 84 -12.81 87.93 REMARK 500 GLU A 113 -124.89 -165.06 REMARK 500 LEU A 114 -34.67 81.29 REMARK 500 LEU A 133 -28.34 51.88 REMARK 500 THR A 134 135.88 99.83 REMARK 500 ASN A 146 32.53 -79.56 REMARK 500 ASN A 217 -89.42 -39.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 113 LEU A 114 -142.09 REMARK 500 LEU A 132 LEU A 133 -148.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 115 10.86 REMARK 500 LEU A 132 17.81 REMARK 500 THR A 134 -10.04 REMARK 500 THR A 193 11.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 257 REMARK 615 HOH A 259 REMARK 615 HOH A 265 REMARK 615 HOH A 292 REMARK 615 HOH A 462 REMARK 615 HOH A 469 DBREF 1RGP A 1 242 UNP Q07960 RHG01_HUMAN 198 439 SEQRES 1 A 242 HIS VAL LYS LEU GLU GLN LEU GLY ILE PRO ARG GLN VAL SEQRES 2 A 242 LEU LYS TYR ASP ASP PHE LEU LYS SER THR GLN LYS SER SEQRES 3 A 242 PRO ALA THR ALA PRO LYS PRO MET PRO PRO ARG PRO PRO SEQRES 4 A 242 LEU PRO ASN GLN GLN PHE GLY VAL SER LEU GLN HIS LEU SEQRES 5 A 242 GLN GLU LYS ASN PRO GLU GLN GLU PRO ILE PRO ILE VAL SEQRES 6 A 242 LEU ARG GLU THR VAL ALA TYR LEU GLN ALA HIS ALA LEU SEQRES 7 A 242 THR THR GLU GLY ILE PHE ARG ARG SER ALA ASN THR GLN SEQRES 8 A 242 VAL VAL ARG GLU VAL GLN GLN LYS TYR ASN MET GLY LEU SEQRES 9 A 242 PRO VAL ASP PHE ASP GLN TYR ASN GLU LEU HIS LEU PRO SEQRES 10 A 242 ALA VAL ILE LEU LYS THR PHE LEU ARG GLU LEU PRO GLU SEQRES 11 A 242 PRO LEU LEU THR PHE ASP LEU TYR PRO HIS VAL VAL GLY SEQRES 12 A 242 PHE LEU ASN ILE ASP GLU SER GLN ARG VAL PRO ALA THR SEQRES 13 A 242 LEU GLN VAL LEU GLN THR LEU PRO GLU GLU ASN TYR GLN SEQRES 14 A 242 VAL LEU ARG PHE LEU THR ALA PHE LEU VAL GLN ILE SER SEQRES 15 A 242 ALA HIS SER ASP GLN ASN LYS MET THR ASN THR ASN LEU SEQRES 16 A 242 ALA VAL VAL PHE GLY PRO ASN LEU LEU TRP ALA LYS ASP SEQRES 17 A 242 ALA ALA ILE THR LEU LYS ALA ILE ASN PRO ILE ASN THR SEQRES 18 A 242 PHE THR LYS PHE LEU LEU ASP HIS GLN GLY GLU LEU PHE SEQRES 19 A 242 PRO SER PRO ASP PRO SER GLY LEU FORMUL 2 HOH *261(H2 O) HELIX 1 1 LEU A 49 LYS A 55 1 7 HELIX 2 2 ILE A 64 HIS A 76 1 13 HELIX 3 3 THR A 90 ASN A 101 1 12 HELIX 4 4 PHE A 108 GLN A 110 5 3 HELIX 5 5 HIS A 115 GLU A 127 1 13 HELIX 6 6 PHE A 135 VAL A 142 5 8 HELIX 7 7 GLU A 149 THR A 162 1 14 HELIX 8 8 GLU A 165 ASN A 188 1 24 HELIX 9 9 ASN A 192 LEU A 203 1 12 HELIX 10 10 ASN A 217 ASP A 228 1 12 CRYST1 36.086 70.086 79.205 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027712 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012625 0.00000