PDB Short entry for 1RL3 HEADER KINASE 24-NOV-03 1RL3 TITLE CRYSTAL STRUCTURE OF CAMP-FREE R1A SUBUNIT OF PKA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY COMPND 3 CHAIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: PRKAR1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE 1A REGULATORY SUBUNIT, CAMP-DEPENDENT PROTEIN KINASE, CAMP-FREE, KEYWDS 2 KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WU,S.BROWN,N.-H.XUONG,S.S.TAYLOR REVDAT 4 23-AUG-23 1RL3 1 REMARK REVDAT 3 13-JUL-11 1RL3 1 VERSN REVDAT 2 24-FEB-09 1RL3 1 VERSN REVDAT 1 06-JUL-04 1RL3 0 JRNL AUTH J.WU,S.BROWN,N.H.XUONG,S.S.TAYLOR JRNL TITL RIALPHA SUBUNIT OF PKA: A CAMP-FREE STRUCTURE REVEALS A JRNL TITL 2 HYDROPHOBIC CAPPING MECHANISM FOR DOCKING CAMP INTO SITE B. JRNL REF STRUCTURE V. 12 1057 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274925 JRNL DOI 10.1016/J.STR.2004.03.022 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1642 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.13000 REMARK 3 B22 (A**2) : -5.13000 REMARK 3 B33 (A**2) : 10.26000 REMARK 3 B12 (A**2) : 11.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.180 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1RGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4SO4, GLYCEROL, DTT, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.80000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.60000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 148.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 92 REMARK 465 ARG A 93 REMARK 465 ARG A 94 REMARK 465 ARG A 95 REMARK 465 GLY A 96 REMARK 465 ALA A 97 REMARK 465 ILE A 98 REMARK 465 SER A 99 REMARK 465 ALA A 100 REMARK 465 GLU A 101 REMARK 465 VAL A 102 REMARK 465 TYR A 103 REMARK 465 THR A 104 REMARK 465 GLU A 105 REMARK 465 GLU A 106 REMARK 465 ASP A 107 REMARK 465 ALA A 108 REMARK 465 LEU A 377 REMARK 465 SER A 378 REMARK 465 VAL A 379 REMARK 465 ARG B 492 REMARK 465 ARG B 493 REMARK 465 ARG B 494 REMARK 465 ARG B 495 REMARK 465 GLY B 496 REMARK 465 ALA B 497 REMARK 465 ILE B 498 REMARK 465 SER B 499 REMARK 465 ALA B 500 REMARK 465 GLU B 501 REMARK 465 VAL B 502 REMARK 465 TYR B 503 REMARK 465 THR B 504 REMARK 465 GLU B 505 REMARK 465 GLU B 506 REMARK 465 ASP B 507 REMARK 465 ALA B 508 REMARK 465 ILE B 768 REMARK 465 GLN B 769 REMARK 465 GLN B 770 REMARK 465 TYR B 771 REMARK 465 ASN B 772 REMARK 465 SER B 773 REMARK 465 PHE B 774 REMARK 465 VAL B 775 REMARK 465 SER B 776 REMARK 465 LEU B 777 REMARK 465 SER B 778 REMARK 465 VAL B 779 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 115 CG1 CG2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ILE A 280 CG1 CG2 CD1 REMARK 470 VAL A 281 CG1 CG2 REMARK 470 VAL A 282 CG1 CG2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 GLN A 302 CG CD OE1 NE2 REMARK 470 ARG A 303 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 SER A 305 OG REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 ASN A 307 CG OD1 ND2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 PHE A 310 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 313 CG1 CG2 REMARK 470 ILE A 325 CG1 CG2 CD1 REMARK 470 LEU A 327 CG CD1 CD2 REMARK 470 MET A 329 CG SD CE REMARK 470 ASN A 330 CG OD1 ND2 REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 THR A 336 OG1 CG2 REMARK 470 VAL A 337 CG1 CG2 REMARK 470 VAL A 338 CG1 CG2 REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 343 CG CD1 CD2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 VAL B 512 CG1 CG2 REMARK 470 ARG B 513 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 515 CG1 CG2 REMARK 470 GLU B 587 CG CD OE1 OE2 REMARK 470 VAL B 651 CG1 CG2 REMARK 470 ILE B 653 CG1 CG2 CD1 REMARK 470 GLU B 675 CG CD OE1 OE2 REMARK 470 ASP B 676 CG OD1 OD2 REMARK 470 LYS B 679 CG CD CE NZ REMARK 470 VAL B 682 CG1 CG2 REMARK 470 GLN B 683 CG CD OE1 NE2 REMARK 470 SER B 697 OG REMARK 470 LEU B 701 CG CD1 CD2 REMARK 470 ARG B 703 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 704 CG CD NE CZ NH1 NH2 REMARK 470 SER B 705 OG REMARK 470 GLU B 706 CG CD OE1 OE2 REMARK 470 ASN B 707 CG OD1 ND2 REMARK 470 GLU B 708 CG CD OE1 OE2 REMARK 470 GLU B 709 CG CD OE1 OE2 REMARK 470 ARG B 715 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 725 CG1 CG2 CD1 REMARK 470 MET B 729 CG SD CE REMARK 470 ASN B 730 CG OD1 ND2 REMARK 470 ARG B 731 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 733 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 737 CG1 CG2 REMARK 470 VAL B 738 CG1 CG2 REMARK 470 ARG B 740 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 763 CG1 CG2 CD1 REMARK 470 ARG B 766 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 268 NH1 ARG A 352 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 117 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 SER A 361 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 PRO B 517 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 ASN B 586 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU B 587 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 GLU B 587 CA - C - O ANGL. DEV. = -14.6 DEGREES REMARK 500 GLU B 587 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 112 37.89 -77.11 REMARK 500 LYS A 114 3.10 160.18 REMARK 500 VAL A 115 112.07 -28.32 REMARK 500 PRO A 117 -76.12 -5.17 REMARK 500 LYS A 118 118.38 62.84 REMARK 500 ASP A 119 -162.06 -68.98 REMARK 500 HIS A 138 45.52 -93.23 REMARK 500 ALA A 158 116.05 -34.79 REMARK 500 ASP A 167 -143.67 -157.79 REMARK 500 ASN A 186 37.78 29.45 REMARK 500 ALA A 189 -76.26 -130.40 REMARK 500 PRO A 208 146.98 -18.42 REMARK 500 ARG A 209 87.98 -60.55 REMARK 500 ALA A 210 17.05 -51.54 REMARK 500 TYR A 244 -13.14 -140.90 REMARK 500 SER A 252 -99.05 21.00 REMARK 500 LEU A 254 18.78 -69.15 REMARK 500 SER A 256 38.50 -78.66 REMARK 500 PHE A 274 -163.31 -121.45 REMARK 500 ILE A 280 94.94 -178.48 REMARK 500 VAL A 281 38.31 -78.50 REMARK 500 VAL A 282 -131.50 -93.06 REMARK 500 GLN A 283 -166.98 80.72 REMARK 500 PRO A 286 22.69 -73.20 REMARK 500 GLU A 295 95.40 -179.31 REMARK 500 LEU A 301 -167.67 -73.37 REMARK 500 SER A 305 -71.93 174.82 REMARK 500 GLU A 306 -67.81 -161.58 REMARK 500 GLU A 308 136.93 -177.60 REMARK 500 GLU A 309 -110.19 -65.13 REMARK 500 GLU A 312 177.59 42.24 REMARK 500 VAL A 313 -16.37 155.85 REMARK 500 SER A 319 23.15 91.56 REMARK 500 ASN A 330 84.43 74.23 REMARK 500 ARG A 331 162.70 178.15 REMARK 500 PRO A 332 -175.36 -64.39 REMARK 500 ALA A 335 -169.72 -108.48 REMARK 500 ARG A 340 80.75 172.29 REMARK 500 CYS A 360 -127.36 -81.84 REMARK 500 SER A 361 -13.61 61.45 REMARK 500 PHE A 374 0.84 -56.87 REMARK 500 SER B 510 -170.95 55.29 REMARK 500 TYR B 511 145.31 145.30 REMARK 500 VAL B 512 112.39 176.50 REMARK 500 ARG B 513 90.59 162.61 REMARK 500 VAL B 515 100.05 -19.78 REMARK 500 PRO B 517 -85.36 -9.03 REMARK 500 LYS B 518 105.32 62.71 REMARK 500 ASP B 519 -128.19 -42.03 REMARK 500 ASP B 570 -70.47 -100.08 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RGS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CAMP-BOUND R1A SUBUNIT OF PKA REMARK 900 RELATED ID: 1NE4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RP-CAMP ANALOG BOUND R1A SUBUNIT OF PKA REMARK 900 RELATED ID: 1NE6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SP-CAMP ANALOG BOUND R1A SUBUNIT OF PKA DBREF 1RL3 A 92 379 UNP P00514 KAP0_BOVIN 92 379 DBREF 1RL3 B 492 779 UNP P00514 KAP0_BOVIN 92 379 SEQRES 1 A 288 ARG ARG ARG ARG GLY ALA ILE SER ALA GLU VAL TYR THR SEQRES 2 A 288 GLU GLU ASP ALA ALA SER TYR VAL ARG LYS VAL ILE PRO SEQRES 3 A 288 LYS ASP TYR LYS THR MET ALA ALA LEU ALA LYS ALA ILE SEQRES 4 A 288 GLU LYS ASN VAL LEU PHE SER HIS LEU ASP ASP ASN GLU SEQRES 5 A 288 ARG SER ASP ILE PHE ASP ALA MET PHE PRO VAL SER PHE SEQRES 6 A 288 ILE ALA GLY GLU THR VAL ILE GLN GLN GLY ASP GLU GLY SEQRES 7 A 288 ASP ASN PHE TYR VAL ILE ASP GLN GLY GLU MET ASP VAL SEQRES 8 A 288 TYR VAL ASN ASN GLU TRP ALA THR SER VAL GLY GLU GLY SEQRES 9 A 288 GLY SER PHE GLY GLU LEU ALA LEU ILE TYR GLY THR PRO SEQRES 10 A 288 ARG ALA ALA THR VAL LYS ALA LYS THR ASN VAL LYS LEU SEQRES 11 A 288 TRP GLY ILE ASP ARG ASP SER TYR ARG ARG ILE LEU MET SEQRES 12 A 288 GLY SER THR LEU ARG LYS ARG LYS MET TYR GLU GLU PHE SEQRES 13 A 288 LEU SER LYS VAL SER ILE LEU GLU SER LEU ASP LYS TRP SEQRES 14 A 288 GLU ARG LEU THR VAL ALA ASP ALA LEU GLU PRO VAL GLN SEQRES 15 A 288 PHE GLU ASP GLY GLN LYS ILE VAL VAL GLN GLY GLU PRO SEQRES 16 A 288 GLY ASP GLU PHE PHE ILE ILE LEU GLU GLY SER ALA ALA SEQRES 17 A 288 VAL LEU GLN ARG ARG SER GLU ASN GLU GLU PHE VAL GLU SEQRES 18 A 288 VAL GLY ARG LEU GLY PRO SER ASP TYR PHE GLY GLU ILE SEQRES 19 A 288 ALA LEU LEU MET ASN ARG PRO ARG ALA ALA THR VAL VAL SEQRES 20 A 288 ALA ARG GLY PRO LEU LYS CYS VAL LYS LEU ASP ARG PRO SEQRES 21 A 288 ARG PHE GLU ARG VAL LEU GLY PRO CYS SER ASP ILE LEU SEQRES 22 A 288 LYS ARG ASN ILE GLN GLN TYR ASN SER PHE VAL SER LEU SEQRES 23 A 288 SER VAL SEQRES 1 B 288 ARG ARG ARG ARG GLY ALA ILE SER ALA GLU VAL TYR THR SEQRES 2 B 288 GLU GLU ASP ALA ALA SER TYR VAL ARG LYS VAL ILE PRO SEQRES 3 B 288 LYS ASP TYR LYS THR MET ALA ALA LEU ALA LYS ALA ILE SEQRES 4 B 288 GLU LYS ASN VAL LEU PHE SER HIS LEU ASP ASP ASN GLU SEQRES 5 B 288 ARG SER ASP ILE PHE ASP ALA MET PHE PRO VAL SER PHE SEQRES 6 B 288 ILE ALA GLY GLU THR VAL ILE GLN GLN GLY ASP GLU GLY SEQRES 7 B 288 ASP ASN PHE TYR VAL ILE ASP GLN GLY GLU MET ASP VAL SEQRES 8 B 288 TYR VAL ASN ASN GLU TRP ALA THR SER VAL GLY GLU GLY SEQRES 9 B 288 GLY SER PHE GLY GLU LEU ALA LEU ILE TYR GLY THR PRO SEQRES 10 B 288 ARG ALA ALA THR VAL LYS ALA LYS THR ASN VAL LYS LEU SEQRES 11 B 288 TRP GLY ILE ASP ARG ASP SER TYR ARG ARG ILE LEU MET SEQRES 12 B 288 GLY SER THR LEU ARG LYS ARG LYS MET TYR GLU GLU PHE SEQRES 13 B 288 LEU SER LYS VAL SER ILE LEU GLU SER LEU ASP LYS TRP SEQRES 14 B 288 GLU ARG LEU THR VAL ALA ASP ALA LEU GLU PRO VAL GLN SEQRES 15 B 288 PHE GLU ASP GLY GLN LYS ILE VAL VAL GLN GLY GLU PRO SEQRES 16 B 288 GLY ASP GLU PHE PHE ILE ILE LEU GLU GLY SER ALA ALA SEQRES 17 B 288 VAL LEU GLN ARG ARG SER GLU ASN GLU GLU PHE VAL GLU SEQRES 18 B 288 VAL GLY ARG LEU GLY PRO SER ASP TYR PHE GLY GLU ILE SEQRES 19 B 288 ALA LEU LEU MET ASN ARG PRO ARG ALA ALA THR VAL VAL SEQRES 20 B 288 ALA ARG GLY PRO LEU LYS CYS VAL LYS LEU ASP ARG PRO SEQRES 21 B 288 ARG PHE GLU ARG VAL LEU GLY PRO CYS SER ASP ILE LEU SEQRES 22 B 288 LYS ARG ASN ILE GLN GLN TYR ASN SER PHE VAL SER LEU SEQRES 23 B 288 SER VAL HET PCG A 401 23 HET GOL A 402 6 HET PCG B 801 23 HET GOL B 802 6 HET GOL B 901 6 HETNAM PCG CYCLIC GUANOSINE MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PCG 2(C10 H12 N5 O7 P) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *17(H2 O) HELIX 1 1 ASP A 119 ASN A 133 1 15 HELIX 2 2 ASP A 140 MET A 151 1 12 HELIX 3 3 GLY A 199 GLY A 206 1 8 HELIX 4 4 ARG A 226 LEU A 233 1 8 HELIX 5 5 LEU A 233 MET A 243 1 11 HELIX 6 6 TYR A 244 LYS A 250 1 7 HELIX 7 7 VAL A 251 LEU A 257 5 7 HELIX 8 8 ASP A 258 LEU A 269 1 12 HELIX 9 9 GLY A 323 MET A 329 1 7 HELIX 10 10 ARG A 350 LEU A 357 1 8 HELIX 11 11 ASP A 362 PHE A 374 1 13 HELIX 12 12 TYR B 520 ASN B 533 1 14 HELIX 13 13 VAL B 534 SER B 537 5 4 HELIX 14 14 ASN B 542 MET B 551 1 10 HELIX 15 15 GLY B 599 GLY B 606 1 8 HELIX 16 16 ARG B 626 LEU B 633 1 8 HELIX 17 17 LEU B 633 LYS B 650 1 18 HELIX 18 18 VAL B 651 GLU B 655 5 5 HELIX 19 19 ASP B 658 LEU B 669 1 12 HELIX 20 20 ILE B 725 ASN B 730 1 6 HELIX 21 21 ARG B 750 LEU B 757 1 8 HELIX 22 22 CYS B 760 ARG B 766 1 7 SHEET 1 A 4 PHE A 152 PHE A 156 0 SHEET 2 A 4 VAL A 219 ASP A 225 -1 O VAL A 219 N PHE A 156 SHEET 3 A 4 ASN A 171 GLN A 177 -1 N VAL A 174 O TRP A 222 SHEET 4 A 4 SER A 197 PHE A 198 -1 O PHE A 198 N TYR A 173 SHEET 1 B 4 THR A 161 GLN A 165 0 SHEET 2 B 4 ALA A 210 ALA A 215 -1 O VAL A 213 N ILE A 163 SHEET 3 B 4 MET A 180 VAL A 184 -1 N ASP A 181 O LYS A 214 SHEET 4 B 4 GLU A 187 TRP A 188 -1 O GLU A 187 N VAL A 184 SHEET 1 C 4 GLU A 270 PRO A 271 0 SHEET 2 C 4 LYS A 344 ASP A 349 -1 O LYS A 347 N GLU A 270 SHEET 3 C 4 GLU A 289 GLU A 295 -1 N GLU A 295 O LYS A 344 SHEET 4 C 4 TYR A 321 PHE A 322 -1 O PHE A 322 N PHE A 291 SHEET 1 D 3 ARG A 315 LEU A 316 0 SHEET 2 D 3 ALA A 298 GLN A 302 -1 N ALA A 298 O LEU A 316 SHEET 3 D 3 ALA A 335 VAL A 337 -1 O THR A 336 N LEU A 301 SHEET 1 E 4 PHE B 552 PHE B 556 0 SHEET 2 E 4 VAL B 619 ASP B 625 -1 O LEU B 621 N VAL B 554 SHEET 3 E 4 ASN B 571 GLN B 577 -1 N VAL B 574 O TRP B 622 SHEET 4 E 4 SER B 597 PHE B 598 -1 O PHE B 598 N TYR B 573 SHEET 1 F 3 THR B 561 ILE B 563 0 SHEET 2 F 3 THR B 612 ALA B 615 -1 O VAL B 613 N ILE B 563 SHEET 3 F 3 MET B 580 TYR B 583 -1 N ASP B 581 O LYS B 614 SHEET 1 G 4 GLU B 670 PHE B 674 0 SHEET 2 G 4 LEU B 743 ASP B 749 -1 O CYS B 745 N VAL B 672 SHEET 3 G 4 GLU B 689 GLU B 695 -1 N GLU B 695 O LYS B 744 SHEET 4 G 4 TYR B 721 PHE B 722 -1 O PHE B 722 N PHE B 691 SHEET 1 H 3 VAL B 711 LEU B 716 0 SHEET 2 H 3 ALA B 698 GLN B 702 -1 N ALA B 698 O LEU B 716 SHEET 3 H 3 THR B 736 VAL B 738 -1 O THR B 736 N LEU B 701 SITE 1 AC1 9 VAL A 182 PHE A 198 GLY A 199 GLU A 200 SITE 2 AC1 9 LEU A 201 ALA A 202 ARG A 209 ALA A 210 SITE 3 AC1 9 TRP A 260 SITE 1 AC2 11 PHE A 374 PHE B 598 GLY B 599 GLU B 600 SITE 2 AC2 11 LEU B 601 ALA B 602 PRO B 608 ARG B 609 SITE 3 AC2 11 ALA B 610 ALA B 611 TRP B 660 SITE 1 AC3 3 GLY A 323 ILE A 325 ALA A 326 SITE 1 AC4 5 GLY B 723 ILE B 725 ALA B 726 ALA B 734 SITE 2 AC4 5 ALA B 735 SITE 1 AC5 4 GLY B 559 GLU B 560 THR B 561 LYS B 614 CRYST1 90.300 90.300 177.600 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011074 0.006394 0.000000 0.00000 SCALE2 0.000000 0.012787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005631 0.00000