PDB Short entry for 1RLG HEADER STRUCTURAL PROTEIN/RNA 25-NOV-03 1RLG TITLE MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO-CRYSTAL TITLE 2 STRUCTURE OF THE ARCHAEAL SRNP INTIATION COMPLEX CAVEAT 1RLG CHIRALITY ERROR AT CYT16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 25-MER; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 50S RIBOSOMAL PROTEIN L7AE; COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 5 ORGANISM_TAXID: 2234; SOURCE 6 GENE: RPL7AE, AF0764; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET13 KEYWDS PROTEIN-RNA, STRUCTURAL PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI REVDAT 4 14-FEB-24 1RLG 1 LINK REVDAT 3 18-APR-18 1RLG 1 REMARK REVDAT 2 24-FEB-09 1RLG 1 VERSN REVDAT 1 01-JUN-04 1RLG 0 JRNL AUTH T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI JRNL TITL MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTIONS; JRNL TITL 2 COCRYSTAL STRUCTURE OF ARCHAEAL L7AE AND A BOX C/D RNA. JRNL REF STRUCTURE V. 12 807 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15130473 JRNL DOI 10.1016/J.STR.2004.02.033 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 324127.190 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 28953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3738 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 348 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1774 REMARK 3 NUCLEIC ACID ATOMS : 1078 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 33.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 263 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99, 1.09, 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 0.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400,MAGNESIUM ACETATE, HEPES , PH REMARK 280 7.5, EVAPORATION, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS PACKED BY A DIMMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE OPERATIONS OF SPACE GROUP P23 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 MET B 1 REMARK 465 LYS B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PRO B 55 CD PRO B 56 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A C 7 C2' - C3' - O3' ANGL. DEV. = 15.4 DEGREES REMARK 500 C C 16 C2' - C3' - O3' ANGL. DEV. = 10.8 DEGREES REMARK 500 G C 17 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 U C 18 C2' - C3' - O3' ANGL. DEV. = 15.0 DEGREES REMARK 500 A D 7 C2' - C3' - O3' ANGL. DEV. = 14.6 DEGREES REMARK 500 C D 16 C2' - C3' - O3' ANGL. DEV. = 13.2 DEGREES REMARK 500 G D 17 C2' - C3' - O3' ANGL. DEV. = 13.2 DEGREES REMARK 500 U D 18 C2' - C3' - O3' ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 54 N - CA - C ANGL. DEV. = 22.8 DEGREES REMARK 500 PRO A 55 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 PRO A 55 C - N - CD ANGL. DEV. = -21.9 DEGREES REMARK 500 PRO A 56 C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 PRO A 56 C - N - CD ANGL. DEV. = -39.8 DEGREES REMARK 500 PRO B 56 C - N - CA ANGL. DEV. = 32.2 DEGREES REMARK 500 PRO B 56 C - N - CD ANGL. DEV. = -41.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 130.33 29.05 REMARK 500 PRO A 56 -80.39 81.37 REMARK 500 GLU A 57 -9.25 -57.75 REMARK 500 LYS A 77 -74.89 -52.26 REMARK 500 ARG A 104 -70.77 -27.06 REMARK 500 PHE B 5 137.73 176.81 REMARK 500 GLU B 24 -68.62 -98.30 REMARK 500 ASP B 52 32.81 -77.48 REMARK 500 PRO B 55 -176.41 -43.61 REMARK 500 PRO B 56 -95.86 82.49 REMARK 500 GLU B 68 -46.49 -151.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G D 6 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1RLG A 1 119 UNP O29494 RL7A_ARCFU 1 119 DBREF 1RLG B 1 119 UNP O29494 RL7A_ARCFU 1 119 DBREF 1RLG C 1 25 PDB 1RLG 1RLG 1 25 DBREF 1RLG D 1 25 PDB 1RLG 1RLG 1 25 SEQRES 1 C 25 G C 5BU C 5BU G A C C G A A A SEQRES 2 C 25 G G C G U G A 5BU G A G C SEQRES 1 D 25 G C 5BU C 5BU G A C C G A A A SEQRES 2 D 25 G G C G U G A 5BU G A G C SEQRES 1 A 119 MET TYR VAL ARG PHE GLU VAL PRO GLU ASP MET GLN ASN SEQRES 2 A 119 GLU ALA LEU SER LEU LEU GLU LYS VAL ARG GLU SER GLY SEQRES 3 A 119 LYS VAL LYS LYS GLY THR ASN GLU THR THR LYS ALA VAL SEQRES 4 A 119 GLU ARG GLY LEU ALA LYS LEU VAL TYR ILE ALA GLU ASP SEQRES 5 A 119 VAL ASP PRO PRO GLU ILE VAL ALA HIS LEU PRO LEU LEU SEQRES 6 A 119 CYS GLU GLU LYS ASN VAL PRO TYR ILE TYR VAL LYS SER SEQRES 7 A 119 LYS ASN ASP LEU GLY ARG ALA VAL GLY ILE GLU VAL PRO SEQRES 8 A 119 CYS ALA SER ALA ALA ILE ILE ASN GLU GLY GLU LEU ARG SEQRES 9 A 119 LYS GLU LEU GLY SER LEU VAL GLU LYS ILE LYS GLY LEU SEQRES 10 A 119 GLN LYS SEQRES 1 B 119 MET TYR VAL ARG PHE GLU VAL PRO GLU ASP MET GLN ASN SEQRES 2 B 119 GLU ALA LEU SER LEU LEU GLU LYS VAL ARG GLU SER GLY SEQRES 3 B 119 LYS VAL LYS LYS GLY THR ASN GLU THR THR LYS ALA VAL SEQRES 4 B 119 GLU ARG GLY LEU ALA LYS LEU VAL TYR ILE ALA GLU ASP SEQRES 5 B 119 VAL ASP PRO PRO GLU ILE VAL ALA HIS LEU PRO LEU LEU SEQRES 6 B 119 CYS GLU GLU LYS ASN VAL PRO TYR ILE TYR VAL LYS SER SEQRES 7 B 119 LYS ASN ASP LEU GLY ARG ALA VAL GLY ILE GLU VAL PRO SEQRES 8 B 119 CYS ALA SER ALA ALA ILE ILE ASN GLU GLY GLU LEU ARG SEQRES 9 B 119 LYS GLU LEU GLY SER LEU VAL GLU LYS ILE LYS GLY LEU SEQRES 10 B 119 GLN LYS MODRES 1RLG 5BU C 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU C 5 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU C 21 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 3 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 5 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 1RLG 5BU D 21 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE HET 5BU C 3 21 HET 5BU C 5 21 HET 5BU C 21 21 HET 5BU D 3 21 HET 5BU D 5 21 HET 5BU D 21 21 HETNAM 5BU 5-BROMO-URIDINE-5'-MONOPHOSPHATE FORMUL 1 5BU 6(C9 H12 BR N2 O9 P) HELIX 1 1 GLU A 9 GLY A 26 1 18 HELIX 2 2 GLY A 31 GLU A 40 1 10 HELIX 3 3 HIS A 61 LYS A 69 1 9 HELIX 4 4 SER A 78 VAL A 86 1 9 HELIX 5 5 GLU A 100 GLU A 102 5 3 HELIX 6 6 LEU A 103 GLY A 116 1 14 HELIX 7 7 PRO B 8 GLY B 26 1 19 HELIX 8 8 GLY B 31 ARG B 41 1 11 HELIX 9 9 HIS B 61 CYS B 66 1 6 HELIX 10 10 SER B 78 GLY B 87 1 10 HELIX 11 11 LEU B 103 LEU B 117 1 15 SHEET 1 A 4 LYS A 27 LYS A 30 0 SHEET 2 A 4 SER A 94 ASN A 99 -1 O ALA A 96 N LYS A 29 SHEET 3 A 4 LEU A 46 ALA A 50 -1 N TYR A 48 O ALA A 95 SHEET 4 A 4 TYR A 73 VAL A 76 1 O VAL A 76 N ILE A 49 SHEET 1 B 4 LYS B 27 LYS B 30 0 SHEET 2 B 4 SER B 94 ASN B 99 -1 O ALA B 96 N LYS B 29 SHEET 3 B 4 LEU B 46 ALA B 50 -1 N TYR B 48 O ALA B 95 SHEET 4 B 4 TYR B 73 VAL B 76 1 O VAL B 76 N ILE B 49 LINK O3' C C 2 P 5BU C 3 1555 1555 1.61 LINK O3' 5BU C 3 P C C 4 1555 1555 1.61 LINK O3' C C 4 P 5BU C 5 1555 1555 1.61 LINK O3' 5BU C 5 P G C 6 1555 1555 1.62 LINK O3' A C 20 P 5BU C 21 1555 1555 1.60 LINK O3' 5BU C 21 P G C 22 1555 1555 1.61 LINK O3' C D 2 P 5BU D 3 1555 1555 1.60 LINK O3' 5BU D 3 P C D 4 1555 1555 1.60 LINK O3' C D 4 P 5BU D 5 1555 1555 1.61 LINK O3' 5BU D 5 P G D 6 1555 1555 1.61 LINK O3' A D 20 P 5BU D 21 1555 1555 1.61 LINK O3' 5BU D 21 P G D 22 1555 1555 1.61 CISPEP 1 ASP A 54 PRO A 55 0 3.31 CISPEP 2 PRO A 55 PRO A 56 0 4.81 CISPEP 3 ASP B 54 PRO B 55 0 -0.20 CISPEP 4 PRO B 55 PRO B 56 0 4.40 CRYST1 120.584 120.584 120.584 90.00 90.00 90.00 P 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008293 0.00000