PDB Short entry for 1RLP HEADER COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE) 10-OCT-94 1RLP TITLE TWO BINDING ORIENTATIONS FOR PEPTIDES TO SRC SH3 DOMAIN: DEVELOPMENT TITLE 2 OF A GENERAL MODEL FOR SH3-LIGAND INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-SRC TYROSINE KINASE SH3 DOMAIN; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROLINE-RICH LIGAND RLP2 (RALPPLPRY); COMPND 7 CHAIN: R; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SYNTHETIC OLIGO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T GENE: SYNTHETIC OLIGO; SOURCE 9 MOL_ID: 2 KEYWDS COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), COMPLEX (SIGNAL TRANSDUCTION- KEYWDS 2 PEPTIDE) COMPLEX EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR S.FENG,J.K.CHEN,H.YU,J.A.SIMON,S.L.SCHREIBER REVDAT 4 02-MAR-22 1RLP 1 REMARK REVDAT 3 24-FEB-09 1RLP 1 VERSN REVDAT 2 01-APR-03 1RLP 1 JRNL REVDAT 1 07-FEB-95 1RLP 0 JRNL AUTH S.FENG,J.K.CHEN,H.YU,J.A.SIMON,S.L.SCHREIBER JRNL TITL TWO BINDING ORIENTATIONS FOR PEPTIDES TO THE SRC SH3 DOMAIN: JRNL TITL 2 DEVELOPMENT OF A GENERAL MODEL FOR SH3-LIGAND INTERACTIONS. JRNL REF SCIENCE V. 266 1241 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 7526465 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YU,J.K.CHEN,S.FENG,D.C.DALGARNO,A.W.BRAUER,S.L.SCHREIBER REMARK 1 TITL STRUCTURAL BASIS FOR THE BINDING OF PROLINE-RICH PEPTIDES TO REMARK 1 TITL 2 SH3 DOMAINS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 76 933 1994 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.YU,M.K.ROSEN,T.B.SHIN,C.SEIDEL-DUGAN,J.S.BRUGGE, REMARK 1 AUTH 2 S.L.SCHREIBER REMARK 1 TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF SRC AND REMARK 1 TITL 2 IDENTIFICATION OF ITS LIGAND-BINDING SITE REMARK 1 REF SCIENCE V. 258 1665 1992 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RLP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176110. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 LEU C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 GLY C 6 REMARK 465 VAL C 7 REMARK 465 THR C 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TRP C 43 CG TRP C 43 CD2 -0.102 REMARK 500 1 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 2 TRP C 42 CG TRP C 42 CD2 -0.102 REMARK 500 2 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 3 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 4 TRP C 42 CG TRP C 42 CD2 -0.103 REMARK 500 4 TRP C 43 CG TRP C 43 CD2 -0.103 REMARK 500 4 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 5 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 6 TRP C 42 CG TRP C 42 CD2 -0.103 REMARK 500 6 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 7 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 8 HIS C 46 CG HIS C 46 ND1 -0.105 REMARK 500 9 TRP C 43 CG TRP C 43 CD2 -0.103 REMARK 500 9 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 10 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 11 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 12 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 13 TRP C 43 CG TRP C 43 CD2 -0.102 REMARK 500 13 HIS C 46 CG HIS C 46 ND1 -0.102 REMARK 500 14 TRP C 43 CG TRP C 43 CD2 -0.102 REMARK 500 14 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 15 HIS C 46 CG HIS C 46 ND1 -0.101 REMARK 500 16 HIS C 46 CG HIS C 46 ND1 -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 1 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 1 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 1 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.8 DEGREES REMARK 500 1 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 2 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 2 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 2 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 2 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 2 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.6 DEGREES REMARK 500 2 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 3 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 3 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.4 DEGREES REMARK 500 3 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES REMARK 500 3 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 3 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 3 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 4 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 4 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.2 DEGREES REMARK 500 4 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.8 DEGREES REMARK 500 4 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 4 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 4 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 4 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.8 DEGREES REMARK 500 4 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 5 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 5 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 5 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 5 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 5 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES REMARK 500 5 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.2 DEGREES REMARK 500 5 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 5 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 6 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 6 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 6 TRP C 42 NE1 - CE2 - CZ2 ANGL. DEV. = 8.7 DEGREES REMARK 500 6 TRP C 42 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 6 TRP C 43 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES REMARK 500 6 TRP C 43 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 6 TRP C 43 NE1 - CE2 - CZ2 ANGL. DEV. = 8.8 DEGREES REMARK 500 6 TRP C 43 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 7 TRP C 42 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 7 TRP C 42 CD1 - NE1 - CE2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 128 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER C 18 -171.48 -61.24 REMARK 500 1 THR C 22 -75.74 -92.02 REMARK 500 1 GLU C 39 -84.91 -144.61 REMARK 500 1 THR C 49 -70.83 -75.84 REMARK 500 1 PRO R 77 173.64 -57.80 REMARK 500 2 GLU C 17 66.54 -108.97 REMARK 500 2 THR C 22 -72.13 -63.00 REMARK 500 2 VAL C 35 -87.42 -103.77 REMARK 500 2 ASN C 37 73.67 74.22 REMARK 500 2 THR C 49 -78.54 -101.24 REMARK 500 2 TYR C 55 93.73 -50.11 REMARK 500 2 PRO C 63 84.85 -60.67 REMARK 500 2 ALA R 72 107.46 -42.59 REMARK 500 2 ARG R 78 167.11 -43.95 REMARK 500 3 GLU C 17 71.81 -104.37 REMARK 500 3 THR C 22 -72.11 -52.18 REMARK 500 3 VAL C 35 -66.67 -107.02 REMARK 500 3 ASN C 37 109.25 63.89 REMARK 500 3 ASP C 41 -30.94 84.23 REMARK 500 3 THR C 49 -72.61 -93.59 REMARK 500 3 PRO C 63 87.20 -62.07 REMARK 500 3 ALA R 72 85.24 66.01 REMARK 500 3 ARG R 78 -36.03 -173.22 REMARK 500 4 GLU C 17 61.48 -108.21 REMARK 500 4 SER C 18 162.53 -43.84 REMARK 500 4 THR C 22 -66.79 -102.06 REMARK 500 4 VAL C 35 -60.19 -96.58 REMARK 500 4 ASN C 36 -147.79 -167.58 REMARK 500 4 ASN C 37 113.07 73.95 REMARK 500 4 ALA R 72 151.07 62.83 REMARK 500 4 PRO R 75 172.13 -59.35 REMARK 500 4 LEU R 76 160.54 -42.90 REMARK 500 5 ALA C 12 92.87 -68.66 REMARK 500 5 GLU C 17 61.62 -113.07 REMARK 500 5 SER C 18 -179.81 -49.72 REMARK 500 5 ASN C 37 53.69 -144.32 REMARK 500 5 THR C 49 -78.09 -93.76 REMARK 500 5 ARG R 78 75.13 61.20 REMARK 500 6 ALA C 12 94.40 -65.19 REMARK 500 6 SER C 18 177.59 -49.82 REMARK 500 6 ARG C 19 -41.16 -133.16 REMARK 500 6 VAL C 35 -70.17 -103.75 REMARK 500 6 ASN C 36 134.65 179.02 REMARK 500 6 ASN C 37 57.92 165.52 REMARK 500 6 THR C 38 -70.26 -42.68 REMARK 500 6 ASP C 41 -44.53 83.84 REMARK 500 6 TYR C 55 91.05 -61.77 REMARK 500 6 ALA C 62 144.20 169.20 REMARK 500 6 PRO C 63 88.02 -63.06 REMARK 500 6 ARG R 78 94.22 38.38 REMARK 500 REMARK 500 THIS ENTRY HAS 161 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLQ RELATED DB: PDB DBREF 1RLP C 1 64 UNP P00523 SRC_CHICK 76 139 DBREF 1RLP R 71 79 PDB 1RLP 1RLP 71 79 SEQRES 1 C 64 GLY ALA LEU ALA GLY GLY VAL THR THR PHE VAL ALA LEU SEQRES 2 C 64 TYR ASP TYR GLU SER ARG THR GLU THR ASP LEU SER PHE SEQRES 3 C 64 LYS LYS GLY GLU ARG LEU GLN ILE VAL ASN ASN THR GLU SEQRES 4 C 64 GLY ASP TRP TRP LEU ALA HIS SER LEU THR THR GLY GLN SEQRES 5 C 64 THR GLY TYR ILE PRO SER ASN TYR VAL ALA PRO SER SEQRES 1 R 9 ARG ALA LEU PRO PRO LEU PRO ARG TYR SHEET 1 A 2 PHE C 10 ALA C 12 0 SHEET 2 A 2 VAL C 61 PRO C 63 -1 N ALA C 62 O VAL C 11 SHEET 1 B 2 TRP C 43 SER C 47 0 SHEET 2 B 2 GLN C 52 ILE C 56 -1 N ILE C 56 O TRP C 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000