PDB Short entry for 1RM1 HEADER TRANSCRIPTION/DNA 26-NOV-03 1RM1 TITLE STRUCTURE OF A YEAST TFIIA/TBP/TATA-BOX DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G) COMPND 3 -3'; COMPND 4 CHAIN: D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T COMPND 8 )-3'; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TATA-BOX BINDING PROTEIN; COMPND 13 CHAIN: A; COMPND 14 SYNONYM: TATA-BOX FACTOR, TATA BINDING FACTOR, TATA SEQUENCE-BINDING COMPND 15 PROTEIN, TBP, TRANSCRIPTION FACTOR D, TRANSCRIPTION INITIATION FACTOR COMPND 16 TFIID TBP SUBUNIT; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA SMALL CHAIN; COMPND 20 CHAIN: B; COMPND 21 SYNONYM: TFIIA 13.5 KDA SUBUNIT; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA LARGE CHAIN; COMPND 25 CHAIN: C; COMPND 26 SYNONYM: TFIIA 32 KDA SUBUNIT; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: SPT15, BTF1, YER148W; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 4932; SOURCE 17 GENE: TOA2, YKL058W; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 21 MOL_ID: 5; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 24 ORGANISM_TAXID: 4932; SOURCE 25 GENE: TOA1, YOR194C; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 KEYWDS YEAST TFIIA, TBP PROTEIN, ATA-BOX DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,D.T.GEWIRTH,J.H.GEIGER REVDAT 3 23-AUG-23 1RM1 1 SEQADV REVDAT 2 24-FEB-09 1RM1 1 VERSN REVDAT 1 26-JUL-05 1RM1 0 JRNL AUTH X.JIN,D.T.GEWIRTH,J.H.GEIGER JRNL TITL HIGH RESOLUTION STRUCTURE OF A YEAST TFIIA/TBP/TATA-BOX DNA JRNL TITL 2 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2992 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3164 REMARK 3 NUCLEIC ACID ATOMS : 735 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PRINCETON 2K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1YTB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM CITRATE, MES, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.62500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.01297 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.69000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.62500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.01297 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.69000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.62500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.01297 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.69000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.62500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.01297 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.69000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.62500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.01297 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.69000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.62500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.01297 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.69000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.02593 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 109.38000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.02593 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 109.38000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.02593 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.38000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.02593 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.38000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.02593 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 109.38000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.02593 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 109.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 PHE A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 VAL A 17 REMARK 465 PHE A 18 REMARK 465 ASP A 19 REMARK 465 PRO A 20 REMARK 465 ASN A 21 REMARK 465 THR A 22 REMARK 465 ARG A 23 REMARK 465 GLN A 24 REMARK 465 VAL A 25 REMARK 465 TRP A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLN A 29 REMARK 465 ASN A 30 REMARK 465 ARG A 31 REMARK 465 ASP A 32 REMARK 465 GLY A 33 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 THR A 39 REMARK 465 PHE A 40 REMARK 465 GLN A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ASP A 45 REMARK 465 ILE A 46 REMARK 465 LYS A 47 REMARK 465 ARG A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 SER A 53 REMARK 465 GLU A 54 REMARK 465 LYS A 55 REMARK 465 ASP A 56 REMARK 465 THR A 57 REMARK 465 SER A 58 REMARK 465 ALA A 59 REMARK 465 THR A 60 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 89 REMARK 465 SER B 90 REMARK 465 HIS B 91 REMARK 465 ARG B 92 REMARK 465 ASP B 93 REMARK 465 ALA B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLY B 98 REMARK 465 SER B 99 REMARK 465 GLY B 100 REMARK 465 ASP B 101 REMARK 465 SER B 102 REMARK 465 GLN B 103 REMARK 465 SER B 104 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 MET C 1 REMARK 465 GLU C 62 REMARK 465 GLY C 63 REMARK 465 ASN C 64 REMARK 465 ILE C 65 REMARK 465 ASN C 66 REMARK 465 GLY C 67 REMARK 465 VAL C 68 REMARK 465 GLN C 69 REMARK 465 ASN C 70 REMARK 465 ASP C 71 REMARK 465 LEU C 72 REMARK 465 ASN C 73 REMARK 465 PHE C 74 REMARK 465 ASN C 75 REMARK 465 LEU C 76 REMARK 465 ALA C 77 REMARK 465 THR C 78 REMARK 465 PRO C 79 REMARK 465 GLY C 80 REMARK 465 VAL C 81 REMARK 465 ASN C 82 REMARK 465 SER C 83 REMARK 465 SER C 84 REMARK 465 GLU C 85 REMARK 465 PHE C 86 REMARK 465 ASN C 87 REMARK 465 ILE C 88 REMARK 465 LYS C 89 REMARK 465 GLU C 90 REMARK 465 GLU C 91 REMARK 465 ASN C 92 REMARK 465 THR C 93 REMARK 465 GLY C 94 REMARK 465 ASN C 95 REMARK 465 GLU C 96 REMARK 465 GLY C 97 REMARK 465 LEU C 98 REMARK 465 ILE C 99 REMARK 465 LEU C 100 REMARK 465 PRO C 101 REMARK 465 ASN C 102 REMARK 465 ILE C 103 REMARK 465 ASN C 104 REMARK 465 SER C 105 REMARK 465 ASN C 106 REMARK 465 ASN C 107 REMARK 465 ASN C 108 REMARK 465 ILE C 109 REMARK 465 PRO C 110 REMARK 465 HIS C 111 REMARK 465 SER C 112 REMARK 465 GLY C 113 REMARK 465 GLU C 114 REMARK 465 THR C 115 REMARK 465 ASN C 116 REMARK 465 ILE C 117 REMARK 465 ASN C 118 REMARK 465 THR C 119 REMARK 465 ASN C 120 REMARK 465 THR C 121 REMARK 465 VAL C 122 REMARK 465 GLU C 123 REMARK 465 ALA C 124 REMARK 465 THR C 125 REMARK 465 ASN C 126 REMARK 465 ASN C 127 REMARK 465 SER C 128 REMARK 465 GLY C 129 REMARK 465 ALA C 130 REMARK 465 THR C 131 REMARK 465 LEU C 132 REMARK 465 ASN C 133 REMARK 465 THR C 134 REMARK 465 ASN C 135 REMARK 465 THR C 136 REMARK 465 SER C 137 REMARK 465 GLY C 138 REMARK 465 ASN C 139 REMARK 465 THR C 140 REMARK 465 ASN C 141 REMARK 465 ALA C 142 REMARK 465 ASP C 143 REMARK 465 VAL C 144 REMARK 465 THR C 145 REMARK 465 SER C 146 REMARK 465 GLN C 147 REMARK 465 PRO C 148 REMARK 465 LYS C 149 REMARK 465 ILE C 150 REMARK 465 GLU C 151 REMARK 465 VAL C 152 REMARK 465 LYS C 153 REMARK 465 PRO C 154 REMARK 465 GLU C 155 REMARK 465 ILE C 156 REMARK 465 GLU C 157 REMARK 465 LEU C 158 REMARK 465 THR C 159 REMARK 465 ILE C 160 REMARK 465 ASN C 161 REMARK 465 ASN C 162 REMARK 465 ALA C 163 REMARK 465 ASN C 164 REMARK 465 ILE C 165 REMARK 465 THR C 166 REMARK 465 THR C 167 REMARK 465 VAL C 168 REMARK 465 GLU C 169 REMARK 465 ASN C 170 REMARK 465 ILE C 171 REMARK 465 ASP C 172 REMARK 465 ASP C 173 REMARK 465 GLU C 174 REMARK 465 SER C 175 REMARK 465 GLU C 176 REMARK 465 LYS C 177 REMARK 465 LYS C 178 REMARK 465 ASP C 179 REMARK 465 ASP C 180 REMARK 465 GLU C 181 REMARK 465 GLU C 182 REMARK 465 LYS C 183 REMARK 465 GLU C 184 REMARK 465 GLU C 185 REMARK 465 ASP C 186 REMARK 465 VAL C 187 REMARK 465 GLU C 188 REMARK 465 LYS C 189 REMARK 465 THR C 190 REMARK 465 ARG C 191 REMARK 465 LYS C 192 REMARK 465 GLU C 193 REMARK 465 LYS C 194 REMARK 465 GLU C 195 REMARK 465 GLN C 196 REMARK 465 ILE C 197 REMARK 465 GLU C 198 REMARK 465 GLN C 199 REMARK 465 VAL C 200 REMARK 465 LYS C 201 REMARK 465 LEU C 202 REMARK 465 GLN C 203 REMARK 465 ALA C 204 REMARK 465 LYS C 205 REMARK 465 LYS C 206 REMARK 465 GLU C 207 REMARK 465 LYS C 208 REMARK 465 ARG C 209 REMARK 465 SER C 210 REMARK 465 ALA C 211 REMARK 465 LEU C 212 REMARK 465 LEU C 213 REMARK 465 ASP C 214 REMARK 465 THR C 215 REMARK 465 ASP C 216 REMARK 465 GLU C 217 REMARK 465 VAL C 218 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 GLU C 221 REMARK 465 LEU C 222 REMARK 465 ASP C 223 REMARK 465 ASP C 224 REMARK 465 SER C 225 REMARK 465 ASP C 226 REMARK 465 ASP C 227 REMARK 465 GLU C 233 REMARK 465 GLY C 234 REMARK 465 GLU C 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 78 130.60 165.98 REMARK 500 LYS A 110 99.80 -51.40 REMARK 500 ALA A 149 43.79 -81.81 REMARK 500 ASP A 154 38.38 28.51 REMARK 500 LYS A 167 -18.59 76.16 REMARK 500 HIS A 179 57.29 -111.10 REMARK 500 GLU A 186 83.73 -155.51 REMARK 500 ILE C 231 151.34 -49.22 REMARK 500 CYS C 246 -164.99 -171.60 REMARK 500 LYS C 255 -116.97 62.32 REMARK 500 ASP C 264 71.34 33.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D 10 0.06 SIDE CHAIN REMARK 500 DA D 15 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1RM1 A 2 240 UNP P13393 TBP_YEAST 1 239 DBREF 1RM1 B 1 122 UNP P32774 TOA2_YEAST 1 122 DBREF 1RM1 C 1 286 UNP P32773 TOA1_YEAST 1 286 DBREF 1RM1 D 1 18 PDB 1RM1 1RM1 1 18 DBREF 1RM1 E 19 36 PDB 1RM1 1RM1 19 36 SEQADV 1RM1 MET A 1 UNP P13393 INITIATING METHIONINE SEQRES 1 D 18 DA DT DC DG DA DT DC DG DA DT DA DT DA SEQRES 2 D 18 DA DA DA DC DG SEQRES 1 E 18 DC DG DT DT DT DT DA DT DA DT DC DG DA SEQRES 2 E 18 DT DC DG DA DT SEQRES 1 A 240 MET ALA ASP GLU GLU ARG LEU LYS GLU PHE LYS GLU ALA SEQRES 2 A 240 ASN LYS ILE VAL PHE ASP PRO ASN THR ARG GLN VAL TRP SEQRES 3 A 240 GLU ASN GLN ASN ARG ASP GLY THR LYS PRO ALA THR THR SEQRES 4 A 240 PHE GLN SER GLU GLU ASP ILE LYS ARG ALA ALA PRO GLU SEQRES 5 A 240 SER GLU LYS ASP THR SER ALA THR SER GLY ILE VAL PRO SEQRES 6 A 240 THR LEU GLN ASN ILE VAL ALA THR VAL THR LEU GLY CYS SEQRES 7 A 240 ARG LEU ASP LEU LYS THR VAL ALA LEU HIS ALA ARG ASN SEQRES 8 A 240 ALA GLU TYR ASN PRO LYS ARG PHE ALA ALA VAL ILE MET SEQRES 9 A 240 ARG ILE ARG GLU PRO LYS THR THR ALA LEU ILE PHE ALA SEQRES 10 A 240 SER GLY LYS MET VAL VAL THR GLY ALA LYS SER GLU ASP SEQRES 11 A 240 ASP SER LYS LEU ALA SER ARG LYS TYR ALA ARG ILE ILE SEQRES 12 A 240 GLN LYS ILE GLY PHE ALA ALA LYS PHE THR ASP PHE LYS SEQRES 13 A 240 ILE GLN ASN ILE VAL GLY SER CYS ASP VAL LYS PHE PRO SEQRES 14 A 240 ILE ARG LEU GLU GLY LEU ALA PHE SER HIS GLY THR PHE SEQRES 15 A 240 SER SER TYR GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR SEQRES 16 A 240 ARG MET VAL LYS PRO LYS ILE VAL LEU LEU ILE PHE VAL SEQRES 17 A 240 SER GLY LYS ILE VAL LEU THR GLY ALA LYS GLN ARG GLU SEQRES 18 A 240 GLU ILE TYR GLN ALA PHE GLU ALA ILE TYR PRO VAL LEU SEQRES 19 A 240 SER GLU PHE ARG LYS MET SEQRES 1 B 122 MET ALA VAL PRO GLY TYR TYR GLU LEU TYR ARG ARG SER SEQRES 2 B 122 THR ILE GLY ASN SER LEU VAL ASP ALA LEU ASP THR LEU SEQRES 3 B 122 ILE SER ASP GLY ARG ILE GLU ALA SER LEU ALA MET ARG SEQRES 4 B 122 VAL LEU GLU THR PHE ASP LYS VAL VAL ALA GLU THR LEU SEQRES 5 B 122 LYS ASP ASN THR GLN SER LYS LEU THR VAL LYS GLY ASN SEQRES 6 B 122 LEU ASP THR TYR GLY PHE CYS ASP ASP VAL TRP THR PHE SEQRES 7 B 122 ILE VAL LYS ASN CYS GLN VAL THR VAL GLU ASP SER HIS SEQRES 8 B 122 ARG ASP ALA SER GLN ASN GLY SER GLY ASP SER GLN SER SEQRES 9 B 122 VAL ILE SER VAL ASP LYS LEU ARG ILE VAL ALA CYS ASN SEQRES 10 B 122 SER LYS LYS SER GLU SEQRES 1 C 286 MET SER ASN ALA GLU ALA SER ARG VAL TYR GLU ILE ILE SEQRES 2 C 286 VAL GLU SER VAL VAL ASN GLU VAL ARG GLU ASP PHE GLU SEQRES 3 C 286 ASN ALA GLY ILE ASP GLU GLN THR LEU GLN ASP LEU LYS SEQRES 4 C 286 ASN ILE TRP GLN LYS LYS LEU THR GLU THR LYS VAL THR SEQRES 5 C 286 THR PHE SER TRP ASP ASN GLN PHE ASN GLU GLY ASN ILE SEQRES 6 C 286 ASN GLY VAL GLN ASN ASP LEU ASN PHE ASN LEU ALA THR SEQRES 7 C 286 PRO GLY VAL ASN SER SER GLU PHE ASN ILE LYS GLU GLU SEQRES 8 C 286 ASN THR GLY ASN GLU GLY LEU ILE LEU PRO ASN ILE ASN SEQRES 9 C 286 SER ASN ASN ASN ILE PRO HIS SER GLY GLU THR ASN ILE SEQRES 10 C 286 ASN THR ASN THR VAL GLU ALA THR ASN ASN SER GLY ALA SEQRES 11 C 286 THR LEU ASN THR ASN THR SER GLY ASN THR ASN ALA ASP SEQRES 12 C 286 VAL THR SER GLN PRO LYS ILE GLU VAL LYS PRO GLU ILE SEQRES 13 C 286 GLU LEU THR ILE ASN ASN ALA ASN ILE THR THR VAL GLU SEQRES 14 C 286 ASN ILE ASP ASP GLU SER GLU LYS LYS ASP ASP GLU GLU SEQRES 15 C 286 LYS GLU GLU ASP VAL GLU LYS THR ARG LYS GLU LYS GLU SEQRES 16 C 286 GLN ILE GLU GLN VAL LYS LEU GLN ALA LYS LYS GLU LYS SEQRES 17 C 286 ARG SER ALA LEU LEU ASP THR ASP GLU VAL GLY SER GLU SEQRES 18 C 286 LEU ASP ASP SER ASP ASP ASP TYR LEU ILE SER GLU GLY SEQRES 19 C 286 GLU GLU ASP GLY PRO ASP GLU ASN LEU MET LEU CYS LEU SEQRES 20 C 286 TYR ASP LYS VAL THR ARG THR LYS ALA ARG TRP LYS CYS SEQRES 21 C 286 SER LEU LYS ASP GLY VAL VAL THR ILE ASN ARG ASN ASP SEQRES 22 C 286 TYR THR PHE GLN LYS ALA GLN VAL GLU ALA GLU TRP VAL FORMUL 6 HOH *301(H2 O) HELIX 1 1 ASP A 81 ALA A 89 1 9 HELIX 2 2 SER A 128 GLY A 147 1 20 HELIX 3 3 ARG A 171 HIS A 179 1 9 HELIX 4 4 GLN A 219 PHE A 237 1 19 HELIX 5 5 GLU B 8 ARG B 12 5 5 HELIX 6 6 SER B 13 ASP B 29 1 17 HELIX 7 7 GLU B 33 ASN B 55 1 23 HELIX 8 8 ASN C 3 ALA C 28 1 26 HELIX 9 9 ASP C 31 LYS C 50 1 20 HELIX 10 10 TRP C 56 ASN C 61 5 6 SHEET 1 A17 SER A 183 GLU A 186 0 SHEET 2 A17 PHE A 190 MET A 197 -1 O ILE A 194 N SER A 184 SHEET 3 A17 ILE A 202 ILE A 206 -1 O ILE A 206 N LEU A 193 SHEET 4 A17 LYS A 211 ALA A 217 -1 O THR A 215 N VAL A 203 SHEET 5 A17 THR A 153 ASP A 165 -1 N GLY A 162 O LEU A 214 SHEET 6 A17 THR A 66 THR A 75 -1 N VAL A 71 O GLN A 158 SHEET 7 A17 LYS A 120 ALA A 126 -1 O VAL A 123 N ALA A 72 SHEET 8 A17 THR A 111 PHE A 116 -1 N LEU A 114 O VAL A 122 SHEET 9 A17 ALA A 101 ILE A 106 -1 N MET A 104 O ALA A 113 SHEET 10 A17 ALA A 92 TYR A 94 -1 N GLU A 93 O ILE A 103 SHEET 11 A17 LYS B 59 CYS B 72 1 O PHE B 71 N TYR A 94 SHEET 12 A17 ASP C 273 GLU C 284 1 O GLN C 280 N VAL B 62 SHEET 13 A17 ARG C 257 THR C 268 -1 N VAL C 267 O TYR C 274 SHEET 14 A17 LEU C 243 THR C 254 -1 N ASP C 249 O SER C 261 SHEET 15 A17 ILE B 106 ASN B 117 1 N ARG B 112 O MET C 244 SHEET 16 A17 VAL B 75 THR B 86 -1 N VAL B 85 O ILE B 106 SHEET 17 A17 LYS B 59 CYS B 72 -1 N LYS B 63 O GLN B 84 CISPEP 1 GLU A 108 PRO A 109 0 -0.53 CISPEP 2 LYS A 199 PRO A 200 0 -0.10 CRYST1 173.250 173.250 164.070 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005772 0.003332 0.000000 0.00000 SCALE2 0.000000 0.006665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006095 0.00000