PDB Short entry for 1RRB
HEADER    TRANSFERASE                             26-MAR-98   1RRB              
TITLE     THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RAS-BINDING DOMAIN, RESIDUES 56-131;                       
COMPND   5 SYNONYM: RAF-1 RBD;                                                  
COMPND   6 EC: 2.7.1.-;                                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;                              
SOURCE   3 ORGANISM_COMMON: NORWAY RAT;                                         
SOURCE   4 ORGANISM_TAXID: 10116;                                               
SOURCE   5 CELL_LINE: BL21;                                                     
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-RID                                   
KEYWDS    RAF-1, RAS-BINDING DOMAIN, TRANSFERASE, SERINE/THREONINE-PROTEIN      
KEYWDS   2 KINASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,       
KEYWDS   3 STRUCTURAL GENOMICS                                                  
EXPDTA    SOLUTION NMR                                                          
AUTHOR    T.TERADA,Y.ITO,M.SHIROUZU,M.TATENO,K.HASHIMOTO,T.KIGAWA,T.EBISUZAKI,  
AUTHOR   2 K.TAKIO,T.SHIBATA,S.YOKOYAMA,B.O.SMITH,E.D.LAUE,J.A.COOPER,RIKEN     
AUTHOR   3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   02-MAR-22 1RRB    1       REMARK                                   
REVDAT   2   24-FEB-09 1RRB    1       VERSN                                    
REVDAT   1   30-MAR-99 1RRB    0                                                
JRNL        AUTH   T.TERADA,Y.ITO,M.SHIROUZU,M.TATENO,K.HASHIMOTO,T.KIGAWA,     
JRNL        AUTH 2 T.EBISUZAKI,K.TAKIO,T.SHIBATA,S.YOKOYAMA,B.O.SMITH,E.D.LAUE, 
JRNL        AUTH 3 J.A.COOPER                                                   
JRNL        TITL   NUCLEAR MAGNETIC RESONANCE AND MOLECULAR DYNAMICS STUDIES ON 
JRNL        TITL 2 THE INTERACTIONS OF THE RAS-BINDING DOMAIN OF RAF-1 WITH     
JRNL        TITL 3 WILD-TYPE AND MUTANT RAS PROTEINS.                           
JRNL        REF    J.MOL.BIOL.                   V. 286   219 1999              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   9931261                                                      
JRNL        DOI    10.1006/JMBI.1998.2472                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.1                                           
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: SIMULATED ANNEALING REFINEMENT FOR NMR    
REMARK   3  STRUCTURE DETERMINATION                                             
REMARK   4                                                                      
REMARK   4 1RRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 100 THE DEPOSITION ID IS D_1000176186.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 5 MM MGCL2                         
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 20 MM SODIUM PHOSPHATE BUFFER      
REMARK 210                                   (PH 6.5)                           
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 1H-1H NOESY; 1H-15N HSQC; 3D 15N   
REMARK 210                                   -EDITED NOESY; 3D 15N-EDITED       
REMARK 210                                   TOCSY; HMQC-J; 3D HNCA; 3D HCCH-   
REMARK 210                                   TOCSY                              
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AMX600                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : FELIX 2.3, AZARA 1.0, X-PLOR 3.1   
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 80                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : CLOSEST TO THE AVERAGE OF 20       
REMARK 210                                   LEAST ENERGY STRUCTURES            
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY ON 13C/15N-LABELED RAF-1 RBD                           
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     ALA A    38                                                      
REMARK 465     SER A    39                                                      
REMARK 465     MET A    40                                                      
REMARK 465     THR A    41                                                      
REMARK 465     GLY A    42                                                      
REMARK 465     GLY A    43                                                      
REMARK 465     GLN A    44                                                      
REMARK 465     GLN A    45                                                      
REMARK 465     MET A    46                                                      
REMARK 465     GLY A    47                                                      
REMARK 465     ARG A    48                                                      
REMARK 465     GLY A    49                                                      
REMARK 465     SER A    50                                                      
REMARK 465     SER A    51                                                      
REMARK 465     SER A    52                                                      
REMARK 465     LYS A    53                                                      
REMARK 465     THR A    54                                                      
REMARK 465     SER A    55                                                      
REMARK 465     LYS A   132                                                      
REMARK 465     LEU A   133                                                      
REMARK 465     ALA A   134                                                      
REMARK 465     ALA A   135                                                      
REMARK 465     ALA A   136                                                      
REMARK 465     LEU A   137                                                      
REMARK 465     GLU A   138                                                      
REMARK 465     HIS A   139                                                      
REMARK 465     HIS A   140                                                      
REMARK 465     HIS A   141                                                      
REMARK 465     HIS A   142                                                      
REMARK 465     HIS A   143                                                      
REMARK 465     HIS A   144                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A  63     -177.86    -66.93                                   
REMARK 500    ASN A  64      -85.66     57.61                                   
REMARK 500    LYS A  65       76.13   -170.55                                   
REMARK 500    VAL A  72       66.96   -118.99                                   
REMARK 500    ASN A  74      -85.63     56.51                                   
REMARK 500    MET A  76       89.13    -58.68                                   
REMARK 500    LEU A  91     -153.66    -89.99                                   
REMARK 500    LEU A 102      103.44    -56.17                                   
REMARK 500    HIS A 105     -157.26   -118.38                                   
REMARK 500    LYS A 106      -76.00    -63.88                                   
REMARK 500    TRP A 114       33.86    -96.12                                   
REMARK 500    ASN A 115       23.20   -157.26                                   
REMARK 500    GLU A 124     -166.40   -100.07                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: MY_001000014.1   RELATED DB: TARGETDB                    
DBREF  1RRB A   51   131  UNP    P11345   RAF1_RAT        51    131             
SEQRES   1 A  107  ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER          
SEQRES   2 A  107  SER SER LYS THR SER ASN THR ILE ARG VAL PHE LEU PRO          
SEQRES   3 A  107  ASN LYS GLN ARG THR VAL VAL ASN VAL ARG ASN GLY MET          
SEQRES   4 A  107  SER LEU HIS ASP CYS LEU MET LYS ALA LEU LYS VAL ARG          
SEQRES   5 A  107  GLY LEU GLN PRO GLU CYS CYS ALA VAL PHE ARG LEU LEU          
SEQRES   6 A  107  GLN GLU HIS LYS GLY LYS LYS ALA ARG LEU ASP TRP ASN          
SEQRES   7 A  107  THR ASP ALA ALA SER LEU ILE GLY GLU GLU LEU GLN VAL          
SEQRES   8 A  107  ASP PHE LEU LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS          
SEQRES   9 A  107  HIS HIS HIS                                                  
HELIX    1  H1 LEU A   78  ARG A   89  1                                  12    
HELIX    2  H2 ALA A  118  LEU A  121  1                                   4    
SHEET    1   S 5 GLN A  66  ASN A  71  0                                        
SHEET    2   S 5 THR A  57  LEU A  62 -1  N  LEU A  62   O  GLN A  66           
SHEET    3   S 5 GLU A 125  ASP A 129  1  N  LEU A 126   O  ARG A  59           
SHEET    4   S 5 CYS A  96  LEU A 101 -1  N  PHE A  99   O  GLN A 127           
SHEET    5   S 5 LYS A 109  LEU A 112 -1  N  ALA A 110   O  ARG A 100           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000