PDB Short entry for 1RUO HEADER TRANSCRIPTION/DNA 26-MAY-96 1RUO TITLE CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + TITLE 2 ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'); COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*G )-3'); COMPND 8 CHAIN: D, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)); COMPND 12 CHAIN: A, B; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE-REGULATORY PROTEIN-DNA COMPLEX, COMPLEX (GENE-REGULATORY KEYWDS 2 PROTEIN-DNA), TRANSCRIPTION REGULATION, DNA-BINDING, CAMP-BINDING, KEYWDS 3 ACTIVATOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.N.PARKINSON,R.H.EBRIGHT,H.M.BERMAN REVDAT 5 14-FEB-24 1RUO 1 REMARK REVDAT 4 03-NOV-21 1RUO 1 REMARK SEQADV REVDAT 3 24-FEB-09 1RUO 1 VERSN REVDAT 2 01-APR-03 1RUO 1 JRNL REVDAT 1 10-JAN-97 1RUO 0 JRNL AUTH G.PARKINSON,A.GUNASEKERA,J.VOJTECHOVSKY,X.ZHANG,T.A.KUNKEL, JRNL AUTH 2 H.BERMAN,R.H.EBRIGHT JRNL TITL AROMATIC HYDROGEN BOND IN SEQUENCE-SPECIFIC PROTEIN DNA JRNL TITL 2 RECOGNITION. JRNL REF NAT.STRUCT.BIOL. V. 3 837 1996 JRNL REFN ISSN 1072-8368 JRNL PMID 8836098 JRNL DOI 10.1038/NSB1096-837 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.9 REMARK 3 NUMBER OF REFLECTIONS : 17328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3157 REMARK 3 NUCLEIC ACID ATOMS : 1262 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : TOPHCSDX.PRO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : DNA-RNA-MULTI-ENDO.PARAM REMARK 3 TOPOLOGY FILE 2 : DNA-RNA-MULTI-ENDO.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000176236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-93 REMARK 200 TEMPERATURE (KELVIN) : 258.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PURDUE DATA PROCESSING PACKAGE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10620 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.64500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.55000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.64500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.55000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 GLY A 207 REMARK 465 THR A 208 REMARK 465 ARG A 209 REMARK 465 VAL B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 83 O2P CMP B 210 2.15 REMARK 500 O GLU B 58 O HOH B 213 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 8 N1 DA C 8 C2 0.070 REMARK 500 DC D 18 N1 DC D 18 C2 0.079 REMARK 500 DT D 22 C2 DT D 22 N3 0.063 REMARK 500 DT D 22 C4 DT D 22 O4 0.062 REMARK 500 DT E 19 C5' DT E 19 C4' 0.047 REMARK 500 DT E 17 C4 DT E 17 O4 0.065 REMARK 500 DC F 7 N1 DC F 7 C2 0.065 REMARK 500 DC F 5 N1 DC F 5 C2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C -4 N3 - C4 - N4 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C -4 C5 - C4 - N4 ANGL. DEV. = 6.3 DEGREES REMARK 500 DA C -2 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 DA C -2 C5 - C6 - N6 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 13 O3' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 DG D 13 C3' - O3' - P ANGL. DEV. = 11.8 DEGREES REMARK 500 DA D 14 P - O5' - C5' ANGL. DEV. = -10.4 DEGREES REMARK 500 DC D 16 O4' - C4' - C3' ANGL. DEV. = -3.6 DEGREES REMARK 500 DC D 16 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 17 N1 - C6 - N6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA D 17 C5 - C6 - N6 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 27 C1' - O4' - C4' ANGL. DEV. = -10.1 DEGREES REMARK 500 DG E 27 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA E 20 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT E 19 C5' - C4' - O4' ANGL. DEV. = 7.5 DEGREES REMARK 500 DT F 12 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG F 10 N9 - C1' - C2' ANGL. DEV. = 9.5 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC F 7 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA F 6 N1 - C6 - N6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DC F 5 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT F 3 N1 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT F -2 O5' - P - OP2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT F -2 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT F -2 N3 - C4 - O4 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT F -2 C5 - C4 - O4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT F -2 C6 - N1 - C1' ANGL. DEV. = -10.1 DEGREES REMARK 500 DT F -2 C2 - N1 - C1' ANGL. DEV. = 10.2 DEGREES REMARK 500 DC F -3 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 LEU A 75 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ILE A 172 CG1 - CB - CG2 ANGL. DEV. = -13.7 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU B 29 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU B 61 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 VAL B 205 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 -2.52 137.69 REMARK 500 GLU A 34 -155.94 -69.40 REMARK 500 ALA A 36 82.48 -49.80 REMARK 500 GLU A 37 -77.70 -98.39 REMARK 500 ILE A 42 88.14 -64.33 REMARK 500 GLU A 54 -57.26 -23.21 REMARK 500 SER A 62 171.43 177.04 REMARK 500 ASN A 65 -164.89 -109.99 REMARK 500 GLN A 66 117.30 -38.07 REMARK 500 LEU A 73 -8.15 -54.50 REMARK 500 LEU A 75 -42.61 -17.28 REMARK 500 GLU A 77 -153.55 -142.87 REMARK 500 ALA A 91 85.88 -46.77 REMARK 500 GLU A 93 78.90 -101.99 REMARK 500 ILE A 97 -131.44 -107.63 REMARK 500 LYS A 101 46.40 -83.34 REMARK 500 ASN A 109 112.81 -168.89 REMARK 500 THR A 158 132.75 -39.71 REMARK 500 PRO A 160 -32.34 -29.75 REMARK 500 LYS A 166 109.16 -53.30 REMARK 500 SER A 179 139.16 -38.03 REMARK 500 GLN A 193 26.47 -71.76 REMARK 500 ASN A 194 6.14 50.64 REMARK 500 HIS A 199 53.02 154.52 REMARK 500 VAL A 205 94.76 -65.57 REMARK 500 GLU B 12 -24.57 179.84 REMARK 500 HIS B 17 34.56 -89.01 REMARK 500 GLU B 34 132.46 -20.25 REMARK 500 TYR B 41 116.83 -162.04 REMARK 500 SER B 62 157.82 147.41 REMARK 500 GLN B 66 144.02 -33.92 REMARK 500 LEU B 75 -37.01 -17.70 REMARK 500 ASN B 109 104.89 -163.54 REMARK 500 PHE B 136 -83.86 -114.10 REMARK 500 LEU B 150 22.64 -79.86 REMARK 500 LYS B 152 45.22 -101.77 REMARK 500 GLN B 153 139.97 172.53 REMARK 500 ASP B 155 -0.54 151.72 REMARK 500 THR B 158 84.53 -66.59 REMARK 500 LYS B 188 -71.35 -57.82 REMARK 500 MET B 189 5.47 -66.82 REMARK 500 GLN B 193 19.37 -68.93 REMARK 500 HIS B 199 -57.34 142.57 REMARK 500 VAL B 205 -27.94 91.46 REMARK 500 TYR B 206 -83.83 -123.26 REMARK 500 THR B 208 -178.42 165.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 159 PRO B 160 -103.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 210 DBREF 1RUO A 1 209 UNP P0ACJ8 CRP_ECOLI 2 210 DBREF 1RUO B 1 209 UNP P0ACJ8 CRP_ECOLI 2 210 DBREF 1RUO C -5 9 PDB 1RUO 1RUO -5 9 DBREF 1RUO D 10 26 PDB 1RUO 1RUO 10 26 DBREF 1RUO E 27 14 PDB 1RUO 1RUO 27 14 DBREF 1RUO F 13 -4 PDB 1RUO 1RUO 13 -4 SEQADV 1RUO PHE A 181 UNP P0ACJ8 GLU 182 ENGINEERED MUTATION SEQADV 1RUO PHE B 181 UNP P0ACJ8 GLU 182 ENGINEERED MUTATION SEQRES 1 C 14 DG DC DG DA DA DA DA DA DT DG DT DG DA SEQRES 2 C 14 DT SEQRES 1 D 17 DC DT DA DG DA DT DC DA DC DA DT DT DT SEQRES 2 D 17 DT DT DC DG SEQRES 1 E 14 DG DC DG DA DA DA DA DA DT DG DT DG DA SEQRES 2 E 14 DT SEQRES 1 F 17 DC DT DA DG DA DT DC DA DC DA DT DT DT SEQRES 2 F 17 DT DT DC DG SEQRES 1 A 209 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 A 209 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 A 209 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 A 209 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 A 209 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 A 209 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 A 209 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 A 209 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 A 209 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 A 209 ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU LYS SEQRES 11 A 209 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 A 209 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 A 209 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 A 209 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG PHE THR SEQRES 15 A 209 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 A 209 ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY THR SEQRES 17 A 209 ARG SEQRES 1 B 209 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 B 209 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 B 209 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 B 209 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 B 209 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 B 209 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 B 209 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 B 209 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 B 209 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 B 209 ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU LYS SEQRES 11 B 209 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 B 209 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 B 209 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 B 209 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG PHE THR SEQRES 15 B 209 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 B 209 ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY THR SEQRES 17 B 209 ARG HET CMP A 210 22 HET CMP B 210 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 7 CMP 2(C10 H12 N5 O6 P) FORMUL 9 HOH *35(H2 O) HELIX 1 1 PRO A 9 CYS A 18 1 10 HELIX 2 2 TYR A 99 VAL A 108 1 10 HELIX 3 3 PRO A 110 PHE A 136 1 27 HELIX 4 4 ASP A 138 ALA A 151 1 14 HELIX 5 5 THR A 168 GLY A 177 1 10 HELIX 6 6 SER A 179 GLN A 193 1 15 HELIX 7 7 GLU B 12 HIS B 17 1 6 HELIX 8 8 TYR B 99 ASN B 109 1 11 HELIX 9 9 PRO B 110 PHE B 136 1 27 HELIX 10 10 ASP B 138 LEU B 150 1 13 HELIX 11 11 THR B 168 GLY B 177 1 10 HELIX 12 12 SER B 179 GLN B 193 1 15 SHEET 1 A 2 HIS A 19 ILE A 20 0 SHEET 2 A 2 ALA A 95 GLU A 96 -1 O GLU A 96 N HIS A 19 SHEET 1 B 2 TYR A 40 TYR A 41 0 SHEET 2 B 2 PHE A 69 ILE A 70 -1 N ILE A 70 O TYR A 40 SHEET 1 C 3 TRP A 85 ALA A 88 0 SHEET 2 C 3 SER A 46 LYS A 52 -1 N ALA A 48 O ARG A 87 SHEET 3 C 3 GLU A 58 ILE A 60 -1 O MET A 59 N ILE A 51 SHEET 1 D 3 TRP A 85 ALA A 88 0 SHEET 2 D 3 SER A 46 LYS A 52 -1 N ALA A 48 O ARG A 87 SHEET 3 D 3 LEU A 64 ASN A 65 -1 O LEU A 64 N VAL A 47 SHEET 1 E 3 MET A 157 THR A 158 0 SHEET 2 E 3 MET A 163 LYS A 166 -1 O GLN A 164 N MET A 157 SHEET 3 E 3 LYS A 201 VAL A 204 -1 O THR A 202 N ILE A 165 SHEET 1 F 3 HIS B 21 TYR B 23 0 SHEET 2 F 3 CYS B 92 SER B 98 -1 O CYS B 92 N TYR B 23 SHEET 3 F 3 THR B 38 LYS B 44 -1 N LEU B 39 O ILE B 97 SHEET 1 G 4 THR B 28 ILE B 30 0 SHEET 2 G 4 VAL B 86 ALA B 88 -1 O VAL B 86 N LEU B 29 SHEET 3 G 4 VAL B 47 LYS B 52 -1 O ALA B 48 N ARG B 87 SHEET 4 G 4 GLU B 58 LEU B 64 -1 N MET B 59 O ILE B 51 SHEET 1 H 2 ILE B 165 LYS B 166 0 SHEET 2 H 2 LYS B 201 THR B 202 -1 N THR B 202 O ILE B 165 SITE 1 AC1 12 LEU A 124 SER A 128 VAL B 49 LEU B 61 SITE 2 AC1 12 SER B 62 GLY B 71 GLU B 72 LEU B 73 SITE 3 AC1 12 ARG B 82 SER B 83 ALA B 84 THR B 127 SITE 1 AC2 12 VAL A 49 SER A 62 ILE A 70 GLY A 71 SITE 2 AC2 12 GLU A 72 LEU A 73 ARG A 82 SER A 83 SITE 3 AC2 12 ALA A 84 THR A 127 LEU B 124 SER B 128 CRYST1 137.290 153.100 76.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013123 0.00000