PDB Short entry for 1S11
HEADER    MEMBRANE PROTEIN                        05-JAN-04   1S11              
TITLE     THEORETICAL MODEL OF GLUTAMATE BINDING SITE OF NMDA                   
TITLE    2 RECEPTOR IN CLOSED FORM                                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON 2;               
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: GLUTAMATE BINDING SITE;                                    
COMPND   5 SYNONYM: N-METHYL D-ASPARTATE RECEPTOR SUBTYPE 2B, NR2B,             
COMPND   6 NMDAR2B, N-METHYL-D-ASPARTATE RECEPTOR SUBUNIT 3;                    
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON 2;               
COMPND   9 CHAIN: B;                                                            
COMPND  10 FRAGMENT: GLUTAMATE BINDING SITE;                                    
COMPND  11 SYNONYM: N-METHYL D-ASPARTATE RECEPTOR SUBTYPE 2B, NR2B,             
COMPND  12 NMDAR2B, N-METHYL-D-ASPARTATE RECEPTOR SUBUNIT 3                     
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 MOL_ID: 2;                                                           
SOURCE   5 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   6 ORGANISM_COMMON: HUMAN                                               
KEYWDS    GLUTAMATE RECEPTOR, GLUTAMATE SITE, NMDA RECEPTOR                     
EXPDTA    THEORETICAL MODEL                                                     
AUTHOR    I.G.TIKHONOVA,I.I.BASKIN,V.A.PALYULIN,N.S.ZEFIROV,                    
AUTHOR   2 S.O.BACHURIN                                                         
REVDAT   1   13-JAN-04 1S11    0                                                
JRNL        AUTH   I.G.TIKHONOVA,I.I.BASKIN,V.A.PALYULIN,N.S.ZEFIROV,           
JRNL        AUTH 2 S.O.BACHURIN                                                 
JRNL        TITL   STRUCTURAL BASIS FOR UNDERSTANDING                           
JRNL        TITL 2 STRUCTURE-ACTIVITY RELATIONSHIPS FOR THE GLUTAMATE           
JRNL        TITL 3 BINDING SITE OF THE NMDA RECEPTOR                            
JRNL        REF    J.MED.CHEM.                   V.  45  3836 2002              
JRNL        REFN   ASTM JMCMAR  US ISSN 0022-2623                               
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SYBYL 6.6                                            
REMARK   3   AUTHORS     : TRIPOS                                               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN        
REMARK   3  THE JOURNAL CITATION ABOVE.                                         
REMARK   4                                                                      
REMARK   4 1S11 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998                       
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-2004.                
REMARK 100 THE RCSB ID CODE IS RCSB021231.                                      
REMARK 220                                                                      
REMARK 220 EXPERIMENTAL DETAILS                                                 
REMARK 220  EXPERIMENT TYPE                : THEORETICAL MODELLING              
REMARK 220                                                                      
REMARK 220 REMARK: MODELLING EXPERIMENT: THE X-RAY STRUCTURE OF THE             
REMARK 220         COMPLEX OF THE WATER SOLUBLE AMPA SENSITIVE GLUTAMATE        
REMARK 220         RECEPTOR, GLUR2 LIGAND BINDING CORE WITH GLUTAMATE           
REMARK 220         (1FTJ), WAS USED AS A TEMPLATE FOR MODELING THE CLOSED       
REMARK 220         FORM OF THE GLUTAMATE BINDING SITE OF THE NMDA RECEPTOR.     
REMARK 220         AFTER MUTATIONS AND LOOP INSERTIONS, THE PROTEIN WAS         
REMARK 220         SUBJECTED TO ENERGY MINIMIZATION USING TRIPOS FORCE          
REMARK 220         FIELD. THEN, THE PROTEIN WAS SOLVATED WITH WATER BOX AND     
REMARK 220         REMINIMIZED WITH THE AMBER 6.031 PROGRAM SANDER USING        
REMARK 220         THE CORNELL ET AL. FORCE FIELD. THIS WAS FOLLOWED BY A       
REMARK 220         SHORT 20 PS DYNAMICS SIMULATION AT 300 K. THE DYNAMICS       
REMARK 220         SIMULATION WAS CONTINUED WITH DOCKED GLUTAMATE FOR 100       
REMARK 220         PS.                                                          
REMARK 225                                                                      
REMARK 225 THEORETICAL MODEL                                                    
REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE.           
REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND                
REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE                   
REMARK 225 RECORDS ARE MEANINGLESS.                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A 491      -64.76     60.01                                   
REMARK 500    ARG B 712      -59.33     51.92                                   
DBREF  1S11 A  403   543  UNP    Q13224   NME2_HUMAN     403    543             
DBREF  1S11 B  660   801  UNP    Q13224   NME2_HUMAN     660    801             
SEQRES   1 A  141  ASP ASP HIS LEU SER ILE VAL THR LEU GLU GLU ALA PRO          
SEQRES   2 A  141  PHE VAL ILE VAL GLU SER VAL ASP PRO LEU SER GLY THR          
SEQRES   3 A  141  CYS MET ARG ASN THR VAL PRO CYS GLN LYS ARG ILE VAL          
SEQRES   4 A  141  THR GLU ASN LYS THR ASP GLU GLU PRO GLY TYR ILE LYS          
SEQRES   5 A  141  LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS LYS          
SEQRES   6 A  141  ILE SER LYS SER VAL LYS PHE THR TYR ASP LEU TYR LEU          
SEQRES   7 A  141  VAL THR ASN GLY LYS HIS GLY LYS LYS ILE ASN GLY THR          
SEQRES   8 A  141  TRP ASN GLY MET ILE GLY GLU VAL VAL MET LYS ARG ALA          
SEQRES   9 A  141  TYR MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU ARG          
SEQRES  10 A  141  SER GLU VAL VAL ASP PHE SER VAL PRO PHE ILE GLU THR          
SEQRES  11 A  141  GLY ILE SER VAL MET VAL SER ARG SER ASN GLY                  
SEQRES   1 B  142  VAL ASP GLN VAL SER GLY LEU SER ASP LYS LYS PHE GLN          
SEQRES   2 B  142  ARG PRO ASN ASP PHE SER PRO PRO PHE ARG PHE GLY THR          
SEQRES   3 B  142  VAL PRO ASN GLY SER THR GLU ARG ASN ILE ARG ASN ASN          
SEQRES   4 B  142  TYR ALA GLU MET HIS ALA TYR MET GLY LYS PHE ASN GLN          
SEQRES   5 B  142  ARG GLY VAL ASP ASP ALA LEU LEU SER LEU LYS THR GLY          
SEQRES   6 B  142  LYS LEU ASP ALA PHE ILE TYR ASP ALA ALA VAL LEU ASN          
SEQRES   7 B  142  TYR MET ALA GLY ARG ASP GLU GLY CYS LYS LEU VAL THR          
SEQRES   8 B  142  ILE GLY SER GLY LYS VAL PHE ALA SER THR GLY TYR GLY          
SEQRES   9 B  142  ILE ALA ILE GLN LYS ASP SER GLY TRP LYS ARG GLN VAL          
SEQRES  10 B  142  ASP LEU ALA ILE LEU GLN LEU PHE GLY ASP GLY GLU MET          
SEQRES  11 B  142  GLU GLU LEU GLU ALA LEU TRP LEU THR GLY ILE CYS              
HELIX    1   1 ASP A  447  LYS A  454  1                                   8    
HELIX    2   2 PHE A  460  LYS A  473  1                                  14    
HELIX    3   3 ASN A  495  MET A  503  1                                   9    
HELIX    4   4 ASN A  516  GLU A  521  5                                   6    
HELIX    5   5 GLY B  665  PHE B  671  1                                   7    
HELIX    6   6 GLN B  672  ASP B  676  5                                   5    
HELIX    7   7 GLY B  689  TYR B  699  1                                  11    
HELIX    8   8 TYR B  699  GLY B  707  1                                   9    
HELIX    9   9 GLY B  713  GLY B  724  1                                  12    
HELIX   10  10 ALA B  733  GLY B  741  1                                   9    
HELIX   11  11 TRP B  772  ASP B  786  1                                  15    
HELIX   12  12 GLU B  788  THR B  798  1                                  11    
SHEET    1   A 2 CYS A 429  ARG A 431  0                                        
SHEET    2   A 2 ILE A 440  THR A 442 -1  O  VAL A 441   N  MET A 430           
SHEET    1   B 2 LYS A 489  ILE A 490  0                                        
SHEET    2   B 2 THR A 493  TRP A 494 -1  O  THR A 493   N  ILE A 490           
SHEET    1   C 2 VAL A 523  ASP A 524  0                                        
SHEET    2   C 2 ILE B 766  GLN B 767 -1  O  ILE B 766   N  ASP A 524           
SHEET    1   D 3 TYR B 731  ASP B 732  0                                        
SHEET    2   D 3 ILE A 530  SER A 535 -1  N  SER A 535   O  TYR B 731           
SHEET    3   D 3 ALA B 758  TYR B 762 -1  O  THR B 760   N  THR A 532           
SHEET    1   E 2 PHE B 681  ARG B 682  0                                        
SHEET    2   E 2 LEU B 726  ASP B 727  1  O  LEU B 726   N  ARG B 682           
SSBOND   1 CYS B  746    CYS B  801                                             
CISPEP   1 ALA A  414    PRO A  415          0         6.11                     
CISPEP   2 LEU A  425    SER A  426          0         0.71                     
CISPEP   3 ASP B  743    GLU B  744          0         5.60                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000