PDB Short entry for 1S1D HEADER HYDROLASE 06-JAN-04 1S1D TITLE STRUCTURE AND PROTEIN DESIGN OF HUMAN APYRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: APYRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CA2+-DEPENDENT ENDOPLASMIC RETICULUM NUCLEOSIDE COMPND 5 DIPHOSPHATASE; APYRASE; SOLUBLE CALCIUM-ACTIVATED NUCLEOTIDASE SCAN- COMPND 6 1; COMPND 7 EC: 3.6.1.5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHAPY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ADPASE, FIVE-BLADE BETA PROPELLER, CALCIUM-BINDING PROTEIN, KEYWDS 2 NUCLEOTIDE-BINDING MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DAI,J.LIU,Y.DENG,T.M.SMITH,M.LU REVDAT 3 23-AUG-23 1S1D 1 REMARK LINK REVDAT 2 24-FEB-09 1S1D 1 VERSN REVDAT 1 16-MAR-04 1S1D 0 JRNL AUTH J.DAI,J.LIU,Y.DENG,T.M.SMITH,M.LU JRNL TITL STRUCTURE AND PROTEIN DESIGN OF A HUMAN PLATELET FUNCTION JRNL TITL 2 INHIBITOR. JRNL REF CELL(CAMBRIDGE,MASS.) V. 116 649 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15006348 JRNL DOI 10.1016/S0092-8674(04)00172-2 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 75102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : -0.37000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5244 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7132 ; 1.543 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 6.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 759 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3984 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2362 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 544 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.157 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 97 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3161 ; 0.975 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5080 ; 1.747 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2083 ; 2.660 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2052 ; 4.275 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79084 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1S18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 2000, SODIUM ACETATE, AMMONIUM REMARK 280 SULFATE, STRONTIUM CHLORIDE, PH 5.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 HIS A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 5 REMARK 465 ASN A 6 REMARK 465 TRP A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 GLN A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 THR B 1 REMARK 465 HIS B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 4 REMARK 465 HIS B 5 REMARK 465 ASN B 6 REMARK 465 TRP B 7 REMARK 465 ARG B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 ASN B 15 REMARK 465 TRP B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 28 OD2 ASP A 68 2.14 REMARK 500 O1B GP2 A 4001 O HOH A 5336 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA B 232 N TRS A 5005 1666 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 169 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 80 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 259 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 -139.53 54.95 REMARK 500 TRP A 128 -55.34 -121.61 REMARK 500 THR A 165 170.72 -58.78 REMARK 500 PRO B 22 -179.59 -64.98 REMARK 500 ASP B 44 -141.65 58.15 REMARK 500 ASN B 53 60.66 37.71 REMARK 500 PHE B 257 19.96 59.89 REMARK 500 ASP B 296 89.61 -151.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 98 O REMARK 620 2 ASP A 99 OD2 87.8 REMARK 620 3 GLU A 145 O 78.2 81.5 REMARK 620 4 GLU A 214 O 152.0 87.3 73.8 REMARK 620 5 SER A 275 O 135.5 108.5 143.5 71.8 REMARK 620 6 GLU A 326 O 66.3 87.7 143.2 141.0 73.3 REMARK 620 7 HOH A5158 O 57.0 131.0 60.2 107.8 120.5 104.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 98 O REMARK 620 2 GLU B 145 O 86.9 REMARK 620 3 GLU B 214 O 163.4 77.3 REMARK 620 4 SER B 275 O 120.7 152.1 74.9 REMARK 620 5 GLU B 326 O 55.9 142.0 138.5 64.9 REMARK 620 6 HOH B5041 O 85.1 97.6 101.7 89.0 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP2 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP2 B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 5003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 5004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 5005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 5006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 5007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S18 RELATED DB: PDB REMARK 900 THE SAME PROTEIN UNCOMPLEXED. DBREF 1S1D A 1 331 UNP Q8WVQ1 CANT1_HUMAN 71 401 DBREF 1S1D B 1 331 UNP Q8WVQ1 CANT1_HUMAN 71 401 SEQRES 1 A 331 THR HIS ASN ALA HIS ASN TRP ARG LEU GLY GLN ALA PRO SEQRES 2 A 331 ALA ASN TRP TYR ASN ASP THR TYR PRO LEU SER PRO PRO SEQRES 3 A 331 GLN ARG THR PRO ALA GLY ILE ARG TYR ARG ILE ALA VAL SEQRES 4 A 331 ILE ALA ASP LEU ASP THR GLU SER ARG ALA GLN GLU GLU SEQRES 5 A 331 ASN THR TRP PHE SER TYR LEU LYS LYS GLY TYR LEU THR SEQRES 6 A 331 LEU SER ASP SER GLY ASP LYS VAL ALA VAL GLU TRP ASP SEQRES 7 A 331 LYS ASP HIS GLY VAL LEU GLU SER HIS LEU ALA GLU LYS SEQRES 8 A 331 GLY ARG GLY MET GLU LEU SER ASP LEU ILE VAL PHE ASN SEQRES 9 A 331 GLY LYS LEU TYR SER VAL ASP ASP ARG THR GLY VAL VAL SEQRES 10 A 331 TYR GLN ILE GLU GLY SER LYS ALA VAL PRO TRP VAL ILE SEQRES 11 A 331 LEU SER ASP GLY ASP GLY THR VAL GLU LYS GLY PHE LYS SEQRES 12 A 331 ALA GLU TRP LEU ALA VAL LYS ASP GLU ARG LEU TYR VAL SEQRES 13 A 331 GLY GLY LEU GLY LYS GLU TRP THR THR THR THR GLY ASP SEQRES 14 A 331 VAL VAL ASN GLU ASN PRO GLU TRP VAL LYS VAL VAL GLY SEQRES 15 A 331 TYR LYS GLY SER VAL ASP HIS GLU ASN TRP VAL SER ASN SEQRES 16 A 331 TYR ASN ALA LEU ARG ALA ALA ALA GLY ILE GLN PRO PRO SEQRES 17 A 331 GLY TYR LEU ILE HIS GLU SER ALA CYS TRP SER ASP THR SEQRES 18 A 331 LEU GLN ARG TRP PHE PHE LEU PRO ARG ARG ALA SER GLN SEQRES 19 A 331 GLU ARG TYR SER GLU LYS ASP ASP GLU ARG LYS GLY ALA SEQRES 20 A 331 ASN LEU LEU LEU SER ALA SER PRO ASP PHE GLY ASP ILE SEQRES 21 A 331 ALA VAL SER HIS VAL GLY ALA VAL VAL PRO THR HIS GLY SEQRES 22 A 331 PHE SER SER PHE LYS PHE ILE PRO ASN THR ASP ASP GLN SEQRES 23 A 331 ILE ILE VAL ALA LEU LYS SER GLU GLU ASP SER GLY ARG SEQRES 24 A 331 VAL ALA SER TYR ILE MET ALA PHE THR LEU ASP GLY ARG SEQRES 25 A 331 PHE LEU LEU PRO GLU THR LYS ILE GLY SER VAL LYS TYR SEQRES 26 A 331 GLU GLY ILE GLU PHE ILE SEQRES 1 B 331 THR HIS ASN ALA HIS ASN TRP ARG LEU GLY GLN ALA PRO SEQRES 2 B 331 ALA ASN TRP TYR ASN ASP THR TYR PRO LEU SER PRO PRO SEQRES 3 B 331 GLN ARG THR PRO ALA GLY ILE ARG TYR ARG ILE ALA VAL SEQRES 4 B 331 ILE ALA ASP LEU ASP THR GLU SER ARG ALA GLN GLU GLU SEQRES 5 B 331 ASN THR TRP PHE SER TYR LEU LYS LYS GLY TYR LEU THR SEQRES 6 B 331 LEU SER ASP SER GLY ASP LYS VAL ALA VAL GLU TRP ASP SEQRES 7 B 331 LYS ASP HIS GLY VAL LEU GLU SER HIS LEU ALA GLU LYS SEQRES 8 B 331 GLY ARG GLY MET GLU LEU SER ASP LEU ILE VAL PHE ASN SEQRES 9 B 331 GLY LYS LEU TYR SER VAL ASP ASP ARG THR GLY VAL VAL SEQRES 10 B 331 TYR GLN ILE GLU GLY SER LYS ALA VAL PRO TRP VAL ILE SEQRES 11 B 331 LEU SER ASP GLY ASP GLY THR VAL GLU LYS GLY PHE LYS SEQRES 12 B 331 ALA GLU TRP LEU ALA VAL LYS ASP GLU ARG LEU TYR VAL SEQRES 13 B 331 GLY GLY LEU GLY LYS GLU TRP THR THR THR THR GLY ASP SEQRES 14 B 331 VAL VAL ASN GLU ASN PRO GLU TRP VAL LYS VAL VAL GLY SEQRES 15 B 331 TYR LYS GLY SER VAL ASP HIS GLU ASN TRP VAL SER ASN SEQRES 16 B 331 TYR ASN ALA LEU ARG ALA ALA ALA GLY ILE GLN PRO PRO SEQRES 17 B 331 GLY TYR LEU ILE HIS GLU SER ALA CYS TRP SER ASP THR SEQRES 18 B 331 LEU GLN ARG TRP PHE PHE LEU PRO ARG ARG ALA SER GLN SEQRES 19 B 331 GLU ARG TYR SER GLU LYS ASP ASP GLU ARG LYS GLY ALA SEQRES 20 B 331 ASN LEU LEU LEU SER ALA SER PRO ASP PHE GLY ASP ILE SEQRES 21 B 331 ALA VAL SER HIS VAL GLY ALA VAL VAL PRO THR HIS GLY SEQRES 22 B 331 PHE SER SER PHE LYS PHE ILE PRO ASN THR ASP ASP GLN SEQRES 23 B 331 ILE ILE VAL ALA LEU LYS SER GLU GLU ASP SER GLY ARG SEQRES 24 B 331 VAL ALA SER TYR ILE MET ALA PHE THR LEU ASP GLY ARG SEQRES 25 B 331 PHE LEU LEU PRO GLU THR LYS ILE GLY SER VAL LYS TYR SEQRES 26 B 331 GLU GLY ILE GLU PHE ILE HET CA A1001 1 HET ACT A2001 4 HET GP2 A4001 28 HET TRS A5001 8 HET TRS A5002 8 HET TRS A5005 8 HET TRS A5007 8 HET CA B1002 1 HET SO4 B3001 5 HET SO4 B3002 5 HET GP2 B4002 28 HET TRS B5003 8 HET TRS B5004 8 HET TRS B5006 8 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GP2 PHOSPHOMETHYLPHOSPHONIC ACID GUANOSYL ESTER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETSYN TRS TRIS BUFFER FORMUL 3 CA 2(CA 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 GP2 2(C11 H17 N5 O10 P2) FORMUL 6 TRS 7(C4 H12 N O3 1+) FORMUL 11 SO4 2(O4 S 2-) FORMUL 17 HOH *650(H2 O) HELIX 1 1 LEU A 43 ARG A 48 5 6 HELIX 2 2 GLU A 173 PRO A 175 5 3 HELIX 3 3 TRP A 192 ALA A 203 1 12 HELIX 4 4 SER A 238 GLU A 243 1 6 HELIX 5 5 LEU B 43 ARG B 48 5 6 HELIX 6 6 GLU B 173 PRO B 175 5 3 HELIX 7 7 TRP B 192 ALA B 203 1 12 HELIX 8 8 SER B 238 GLU B 243 1 6 SHEET 1 A 4 GLN A 27 THR A 29 0 SHEET 2 A 4 GLY A 32 ASP A 42 -1 O ARG A 34 N GLN A 27 SHEET 3 A 4 TRP A 55 SER A 67 -1 O LEU A 64 N TYR A 35 SHEET 4 A 4 GLY A 82 SER A 86 -1 O GLY A 82 N LEU A 59 SHEET 1 B 4 VAL A 73 TRP A 77 0 SHEET 2 B 4 TRP A 55 SER A 67 -1 N TYR A 63 O GLU A 76 SHEET 3 B 4 GLY A 32 ASP A 42 -1 N TYR A 35 O LEU A 64 SHEET 4 B 4 LYS A 324 PHE A 330 -1 O LYS A 324 N ASP A 42 SHEET 1 C 4 LEU A 97 PHE A 103 0 SHEET 2 C 4 LYS A 106 ASP A 111 -1 O TYR A 108 N ILE A 101 SHEET 3 C 4 VAL A 116 GLU A 121 -1 O ILE A 120 N LEU A 107 SHEET 4 C 4 LYS A 124 ILE A 130 -1 O VAL A 126 N GLN A 119 SHEET 1 D 2 SER A 132 ASP A 133 0 SHEET 2 D 2 VAL A 138 GLY A 141 -1 O LYS A 140 N ASP A 133 SHEET 1 E 4 TRP A 146 LYS A 150 0 SHEET 2 E 4 ARG A 153 GLY A 157 -1 O TYR A 155 N ALA A 148 SHEET 3 E 4 TRP A 177 VAL A 181 -1 O LYS A 179 N VAL A 156 SHEET 4 E 4 VAL A 187 ASN A 191 -1 O GLU A 190 N VAL A 178 SHEET 1 F 2 TRP A 163 THR A 164 0 SHEET 2 F 2 VAL A 170 ASN A 172 -1 O VAL A 171 N TRP A 163 SHEET 1 G 2 TYR A 210 ILE A 212 0 SHEET 2 G 2 ARG A 231 SER A 233 -1 O ARG A 231 N ILE A 212 SHEET 1 H 4 ALA A 216 SER A 219 0 SHEET 2 H 4 ARG A 224 PHE A 227 -1 O PHE A 226 N CYS A 217 SHEET 3 H 4 LEU A 249 ALA A 253 -1 O ALA A 253 N TRP A 225 SHEET 4 H 4 ILE A 260 HIS A 264 -1 O ALA A 261 N SER A 252 SHEET 1 I 4 HIS A 272 PHE A 279 0 SHEET 2 I 4 ILE A 287 ASP A 296 -1 O LEU A 291 N SER A 276 SHEET 3 I 4 ARG A 299 THR A 308 -1 O PHE A 307 N ILE A 288 SHEET 4 I 4 PHE A 313 GLY A 321 -1 O ILE A 320 N SER A 302 SHEET 1 J 4 GLN B 27 ARG B 28 0 SHEET 2 J 4 GLY B 32 ALA B 41 -1 O ARG B 34 N GLN B 27 SHEET 3 J 4 TRP B 55 SER B 67 -1 O LEU B 64 N TYR B 35 SHEET 4 J 4 GLY B 82 SER B 86 -1 O SER B 86 N TRP B 55 SHEET 1 K 4 VAL B 73 TRP B 77 0 SHEET 2 K 4 TRP B 55 SER B 67 -1 N TYR B 63 O GLU B 76 SHEET 3 K 4 GLY B 32 ALA B 41 -1 N TYR B 35 O LEU B 64 SHEET 4 K 4 TYR B 325 PHE B 330 -1 O GLU B 326 N ILE B 40 SHEET 1 L 4 LEU B 97 PHE B 103 0 SHEET 2 L 4 LYS B 106 ASP B 111 -1 O TYR B 108 N ILE B 101 SHEET 3 L 4 VAL B 116 GLU B 121 -1 O ILE B 120 N LEU B 107 SHEET 4 L 4 LYS B 124 ILE B 130 -1 O VAL B 126 N GLN B 119 SHEET 1 M 2 SER B 132 ASP B 133 0 SHEET 2 M 2 VAL B 138 GLY B 141 -1 O LYS B 140 N ASP B 133 SHEET 1 N 4 TRP B 146 LYS B 150 0 SHEET 2 N 4 ARG B 153 GLY B 157 -1 O TYR B 155 N ALA B 148 SHEET 3 N 4 TRP B 177 GLY B 182 -1 O VAL B 181 N LEU B 154 SHEET 4 N 4 VAL B 187 ASN B 191 -1 O GLU B 190 N VAL B 178 SHEET 1 O 2 TRP B 163 THR B 164 0 SHEET 2 O 2 VAL B 170 ASN B 172 -1 O VAL B 171 N TRP B 163 SHEET 1 P 2 TYR B 210 ILE B 212 0 SHEET 2 P 2 ARG B 231 SER B 233 -1 O SER B 233 N TYR B 210 SHEET 1 Q 4 ALA B 216 SER B 219 0 SHEET 2 Q 4 ARG B 224 PHE B 227 -1 O PHE B 226 N CYS B 217 SHEET 3 Q 4 LEU B 249 ALA B 253 -1 O ALA B 253 N TRP B 225 SHEET 4 Q 4 ILE B 260 HIS B 264 -1 O ALA B 261 N SER B 252 SHEET 1 R 4 HIS B 272 PHE B 279 0 SHEET 2 R 4 ILE B 287 ASP B 296 -1 O VAL B 289 N LYS B 278 SHEET 3 R 4 ARG B 299 THR B 308 -1 O ALA B 301 N GLU B 294 SHEET 4 R 4 PHE B 313 GLY B 321 -1 O ILE B 320 N SER B 302 LINK O SER A 98 CA CA A1001 1555 1555 2.53 LINK OD2 ASP A 99 CA CA A1001 1555 1555 3.38 LINK O GLU A 145 CA CA A1001 1555 1555 2.64 LINK O GLU A 214 CA CA A1001 1555 1555 2.56 LINK O SER A 275 CA CA A1001 1555 1555 2.58 LINK O GLU A 326 CA CA A1001 1555 1555 2.85 LINK CA CA A1001 O HOH A5158 1555 1555 2.97 LINK O SER B 98 CA CA B1002 1555 1555 2.23 LINK O GLU B 145 CA CA B1002 1555 1555 2.47 LINK O GLU B 214 CA CA B1002 1555 1555 2.42 LINK O SER B 275 CA CA B1002 1555 1555 2.31 LINK O GLU B 326 CA CA B1002 1555 1555 3.32 LINK CA CA B1002 O HOH B5041 1555 1555 2.62 CISPEP 1 TYR A 21 PRO A 22 0 -8.58 CISPEP 2 PRO A 207 PRO A 208 0 3.51 CISPEP 3 TYR B 21 PRO B 22 0 -8.71 CISPEP 4 PRO B 207 PRO B 208 0 8.51 SITE 1 AC1 7 SER A 98 ASP A 99 GLU A 145 GLU A 214 SITE 2 AC1 7 SER A 275 GLU A 326 HOH A5158 SITE 1 AC2 6 SER B 98 GLU B 145 GLU B 214 SER B 275 SITE 2 AC2 6 GLU B 326 HOH B5041 SITE 1 AC3 4 ASP A 133 LYS A 143 ASN A 172 ASN A 174 SITE 1 AC4 4 LYS B 60 HIS B 81 TYR B 325 HOH B5314 SITE 1 AC5 6 ARG B 113 LYS B 143 TRP B 163 TRS B5006 SITE 2 AC5 6 HOH B5216 HOH B5269 SITE 1 AC6 16 ASP A 42 ASP A 44 ASP A 112 GLU A 145 SITE 2 AC6 16 LYS A 161 GLU A 162 TRP A 163 THR A 164 SITE 3 AC6 16 TYR A 237 ASP A 242 LYS A 324 GLU A 326 SITE 4 AC6 16 HOH A5169 HOH A5275 HOH A5309 HOH A5336 SITE 1 AC7 18 ASP B 42 ASP B 44 LYS B 161 GLU B 162 SITE 2 AC7 18 TRP B 163 THR B 164 GLU B 214 ARG B 230 SITE 3 AC7 18 TYR B 237 ASP B 242 GLU B 295 LYS B 324 SITE 4 AC7 18 GLU B 326 HOH B5055 HOH B5083 HOH B5140 SITE 5 AC7 18 HOH B5157 HOH B5322 SITE 1 AC8 11 TYR A 21 VAL A 102 VAL A 149 LYS A 278 SITE 2 AC8 11 GLU A 329 HOH A5025 HOH A5026 HOH A5044 SITE 3 AC8 11 HOH A5091 HOH A5207 HOH A5295 SITE 1 AC9 12 LEU A 23 LEU A 59 LYS A 61 LEU A 107 SITE 2 AC9 12 ILE A 120 GLU A 121 GLY A 122 ILE A 331 SITE 3 AC9 12 TRS A5007 HOH A5108 HOH A5142 TYR B 63 SITE 1 BC1 7 TYR B 21 GLU B 329 HOH B5017 HOH B5019 SITE 2 BC1 7 HOH B5068 HOH B5070 HOH B5196 SITE 1 BC2 11 TYR A 63 TRS A5007 LEU B 23 LEU B 59 SITE 2 BC2 11 LYS B 61 LEU B 107 ILE B 120 GLY B 122 SITE 3 BC2 11 ILE B 331 HOH B5132 HOH B5144 SITE 1 BC3 11 ILE A 260 ALA A 261 VAL A 262 HOH A5102 SITE 2 BC3 11 HOH A5298 HOH A5312 ALA B 232 SER B 233 SITE 3 BC3 11 GLN B 234 LYS B 245 HOH B5089 SITE 1 BC4 11 ASP B 133 LYS B 140 LYS B 143 TRP B 163 SITE 2 BC4 11 ASN B 172 ASN B 174 PRO B 175 SO4 B3002 SITE 3 BC4 11 HOH B5020 HOH B5128 HOH B5134 SITE 1 BC5 8 ARG A 36 LYS A 61 TRS A5002 HOH A5256 SITE 2 BC5 8 ARG B 36 LYS B 61 TRS B5004 HOH B5185 CRYST1 43.163 52.450 77.478 98.99 106.99 100.09 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023168 0.004124 0.008188 0.00000 SCALE2 0.000000 0.019365 0.004374 0.00000 SCALE3 0.000000 0.000000 0.013836 0.00000