PDB Short entry for 1S8E HEADER REPLICATION 02-FEB-04 1S8E TITLE CRYSTAL STRUCTURE OF MRE11-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-333; COMPND 5 SYNONYM: MRE11 NUCLEASE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA DOUBLE-STRAND BREAK, MRE11, RAD50, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.P.HOPFNER REVDAT 5 10-NOV-21 1S8E 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1S8E 1 VERSN REVDAT 3 24-FEB-09 1S8E 1 VERSN REVDAT 2 08-FEB-05 1S8E 1 JRNL REVDAT 1 10-AUG-04 1S8E 0 JRNL AUTH L.M.ARTHUR,K.GUSTAUSSON,K.P.HOPFNER,C.T.CARSON,T.H.STRACKER, JRNL AUTH 2 A.KARCHER,D.FELTON,M.D.WEITZMAN,J.A.TAINER,J.P.CARNEY JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF MRE11-3 JRNL REF NUCLEIC ACIDS RES. V. 32 1886 2004 JRNL REFN ISSN 0305-1048 JRNL PMID 15047855 JRNL DOI 10.1093/NAR/GKH343 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2044 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN B 89 REMARK 475 ASP B 186 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 14 OE1 OE2 REMARK 480 GLN A 89 CB CG CD OE1 NE2 REMARK 480 ARG A 90 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 152 CD OE1 OE2 REMARK 480 ILE A 243 CB CG1 CG2 CD1 REMARK 480 LYS A 246 CG CD CE NZ REMARK 480 ARG A 248 CZ NH1 NH2 REMARK 480 ARG A 309 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 332 CZ NH1 NH2 REMARK 480 ARG B 87 CZ NH1 NH2 REMARK 480 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 480 TYR B 105 CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS B 111 CB CG CD CE NZ REMARK 480 GLU B 152 CG CD OE1 OE2 REMARK 480 LYS B 155 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 86 CB VAL B 86 CG1 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 86 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 VAL B 86 CG1 - CB - CG2 ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 136 -120.06 55.72 REMARK 500 ASN A 154 56.18 -140.54 REMARK 500 LYS A 155 131.52 -37.05 REMARK 500 GLU A 156 28.49 48.46 REMARK 500 ARG A 183 25.18 -146.46 REMARK 500 HIS A 206 -45.26 118.75 REMARK 500 SER A 216 53.87 38.97 REMARK 500 ASP A 233 41.90 -93.52 REMARK 500 ILE A 243 -30.20 -137.20 REMARK 500 THR B 88 -32.48 -152.13 REMARK 500 GLN B 89 -100.81 78.73 REMARK 500 LYS B 136 -121.52 53.44 REMARK 500 TYR B 187 75.86 -113.09 REMARK 500 HIS B 206 -38.20 120.22 REMARK 500 ASP B 233 43.47 -107.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 HIS A 10 NE2 105.0 REMARK 620 3 ASP A 49 OD1 89.9 97.5 REMARK 620 4 HIS A 208 NE2 92.1 88.6 172.9 REMARK 620 5 HOH A 630 O 83.3 170.9 86.3 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASN A 84 OD1 103.8 REMARK 620 3 HIS A 173 NE2 86.5 87.9 REMARK 620 4 HIS A 206 ND1 154.1 100.4 85.5 REMARK 620 5 HOH A 602 O 72.4 103.9 157.7 110.4 REMARK 620 6 HOH A 630 O 83.5 165.6 105.1 75.0 66.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD1 REMARK 620 2 HIS B 10 NE2 106.9 REMARK 620 3 ASP B 49 OD2 88.0 92.7 REMARK 620 4 HIS B 208 NE2 91.9 93.5 173.6 REMARK 620 5 HOH B 605 O 77.6 175.4 86.3 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 49 OD2 REMARK 620 2 ASN B 84 OD1 106.5 REMARK 620 3 HIS B 173 NE2 90.6 77.4 REMARK 620 4 HOH B 601 O 77.0 100.4 166.4 REMARK 620 5 HOH B 605 O 82.7 170.4 100.3 84.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 404 DBREF 1S8E A 2 333 UNP Q8U1N9 MRE11_PYRFU 4 335 DBREF 1S8E B 2 333 UNP Q8U1N9 MRE11_PYRFU 4 335 SEQADV 1S8E MET A 1 UNP Q8U1N9 INITIATING METHIONINE SEQADV 1S8E LEU A 85 UNP Q8U1N9 HIS 87 ENGINEERED MUTATION SEQADV 1S8E VAL A 86 UNP Q8U1N9 ASP 88 ENGINEERED MUTATION SEQADV 1S8E MET B 1 UNP Q8U1N9 INITIATING METHIONINE SEQADV 1S8E LEU B 85 UNP Q8U1N9 HIS 87 ENGINEERED MUTATION SEQADV 1S8E VAL B 86 UNP Q8U1N9 ASP 88 ENGINEERED MUTATION SEQRES 1 A 333 MET LYS PHE ALA HIS LEU ALA ASP ILE HIS LEU GLY TYR SEQRES 2 A 333 GLU GLN PHE HIS LYS PRO GLN ARG GLU GLU GLU PHE ALA SEQRES 3 A 333 GLU ALA PHE LYS ASN ALA LEU GLU ILE ALA VAL GLN GLU SEQRES 4 A 333 ASN VAL ASP PHE ILE LEU ILE ALA GLY ASP LEU PHE HIS SEQRES 5 A 333 SER SER ARG PRO SER PRO GLY THR LEU LYS LYS ALA ILE SEQRES 6 A 333 ALA LEU LEU GLN ILE PRO LYS GLU HIS SER ILE PRO VAL SEQRES 7 A 333 PHE ALA ILE GLU GLY ASN LEU VAL ARG THR GLN ARG GLY SEQRES 8 A 333 PRO SER VAL LEU ASN LEU LEU GLU ASP PHE GLY LEU VAL SEQRES 9 A 333 TYR VAL ILE GLY MET ARG LYS GLU LYS VAL GLU ASN GLU SEQRES 10 A 333 TYR LEU THR SER GLU ARG LEU GLY ASN GLY GLU TYR LEU SEQRES 11 A 333 VAL LYS GLY VAL TYR LYS ASP LEU GLU ILE HIS GLY MET SEQRES 12 A 333 LYS TYR MET SER SER ALA TRP PHE GLU ALA ASN LYS GLU SEQRES 13 A 333 ILE LEU LYS ARG LEU PHE ARG PRO THR ASP ASN ALA ILE SEQRES 14 A 333 LEU MET LEU HIS GLN GLY VAL ARG GLU VAL SER GLU ALA SEQRES 15 A 333 ARG GLY GLU ASP TYR PHE GLU ILE GLY LEU GLY ASP LEU SEQRES 16 A 333 PRO GLU GLY TYR LEU TYR TYR ALA LEU GLY HIS ILE HIS SEQRES 17 A 333 LYS ARG TYR GLU THR SER TYR SER GLY SER PRO VAL VAL SEQRES 18 A 333 TYR PRO GLY SER LEU GLU ARG TRP ASP PHE GLY ASP TYR SEQRES 19 A 333 GLU VAL ARG TYR GLU TRP ASP GLY ILE LYS PHE LYS GLU SEQRES 20 A 333 ARG TYR GLY VAL ASN LYS GLY PHE TYR ILE VAL GLU ASP SEQRES 21 A 333 PHE LYS PRO ARG PHE VAL GLU ILE LYS VAL ARG PRO PHE SEQRES 22 A 333 ILE ASP VAL LYS ILE LYS GLY SER GLU GLU GLU ILE ARG SEQRES 23 A 333 LYS ALA ILE LYS ARG LEU ILE PRO LEU ILE PRO LYS ASN SEQRES 24 A 333 ALA TYR VAL ARG LEU ASN ILE GLY TRP ARG LYS PRO PHE SEQRES 25 A 333 ASP LEU THR GLU ILE LYS GLU LEU LEU ASN VAL GLU TYR SEQRES 26 A 333 LEU LYS ILE ASP THR TRP ARG ILE SEQRES 1 B 333 MET LYS PHE ALA HIS LEU ALA ASP ILE HIS LEU GLY TYR SEQRES 2 B 333 GLU GLN PHE HIS LYS PRO GLN ARG GLU GLU GLU PHE ALA SEQRES 3 B 333 GLU ALA PHE LYS ASN ALA LEU GLU ILE ALA VAL GLN GLU SEQRES 4 B 333 ASN VAL ASP PHE ILE LEU ILE ALA GLY ASP LEU PHE HIS SEQRES 5 B 333 SER SER ARG PRO SER PRO GLY THR LEU LYS LYS ALA ILE SEQRES 6 B 333 ALA LEU LEU GLN ILE PRO LYS GLU HIS SER ILE PRO VAL SEQRES 7 B 333 PHE ALA ILE GLU GLY ASN LEU VAL ARG THR GLN ARG GLY SEQRES 8 B 333 PRO SER VAL LEU ASN LEU LEU GLU ASP PHE GLY LEU VAL SEQRES 9 B 333 TYR VAL ILE GLY MET ARG LYS GLU LYS VAL GLU ASN GLU SEQRES 10 B 333 TYR LEU THR SER GLU ARG LEU GLY ASN GLY GLU TYR LEU SEQRES 11 B 333 VAL LYS GLY VAL TYR LYS ASP LEU GLU ILE HIS GLY MET SEQRES 12 B 333 LYS TYR MET SER SER ALA TRP PHE GLU ALA ASN LYS GLU SEQRES 13 B 333 ILE LEU LYS ARG LEU PHE ARG PRO THR ASP ASN ALA ILE SEQRES 14 B 333 LEU MET LEU HIS GLN GLY VAL ARG GLU VAL SER GLU ALA SEQRES 15 B 333 ARG GLY GLU ASP TYR PHE GLU ILE GLY LEU GLY ASP LEU SEQRES 16 B 333 PRO GLU GLY TYR LEU TYR TYR ALA LEU GLY HIS ILE HIS SEQRES 17 B 333 LYS ARG TYR GLU THR SER TYR SER GLY SER PRO VAL VAL SEQRES 18 B 333 TYR PRO GLY SER LEU GLU ARG TRP ASP PHE GLY ASP TYR SEQRES 19 B 333 GLU VAL ARG TYR GLU TRP ASP GLY ILE LYS PHE LYS GLU SEQRES 20 B 333 ARG TYR GLY VAL ASN LYS GLY PHE TYR ILE VAL GLU ASP SEQRES 21 B 333 PHE LYS PRO ARG PHE VAL GLU ILE LYS VAL ARG PRO PHE SEQRES 22 B 333 ILE ASP VAL LYS ILE LYS GLY SER GLU GLU GLU ILE ARG SEQRES 23 B 333 LYS ALA ILE LYS ARG LEU ILE PRO LEU ILE PRO LYS ASN SEQRES 24 B 333 ALA TYR VAL ARG LEU ASN ILE GLY TRP ARG LYS PRO PHE SEQRES 25 B 333 ASP LEU THR GLU ILE LYS GLU LEU LEU ASN VAL GLU TYR SEQRES 26 B 333 LEU LYS ILE ASP THR TRP ARG ILE HET MN A 401 1 HET MN A 402 1 HET MN B 403 1 HET MN B 404 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *343(H2 O) HELIX 1 1 GLU A 14 HIS A 17 5 4 HELIX 2 2 LYS A 18 GLU A 39 1 22 HELIX 3 3 SER A 57 LEU A 68 1 12 HELIX 4 4 LEU A 68 GLU A 73 1 6 HELIX 5 5 SER A 93 PHE A 101 1 9 HELIX 6 6 GLU A 156 PHE A 162 1 7 HELIX 7 7 VAL A 176 ALA A 182 1 7 HELIX 8 8 GLY A 191 LEU A 195 5 5 HELIX 9 9 ASP A 230 TYR A 234 5 5 HELIX 10 10 SER A 281 ILE A 293 1 13 HELIX 11 11 LEU A 314 LEU A 321 1 8 HELIX 12 12 GLU B 14 HIS B 17 5 4 HELIX 13 13 LYS B 18 GLU B 39 1 22 HELIX 14 14 SER B 57 GLU B 73 1 17 HELIX 15 15 SER B 93 PHE B 101 1 9 HELIX 16 16 SER B 147 ASN B 154 1 8 HELIX 17 17 GLU B 156 PHE B 162 1 7 HELIX 18 18 VAL B 176 ARG B 183 1 8 HELIX 19 19 GLY B 191 LEU B 195 5 5 HELIX 20 20 ASP B 230 TYR B 234 5 5 HELIX 21 21 SER B 281 ILE B 293 1 13 HELIX 22 22 PRO B 294 ILE B 296 5 3 HELIX 23 23 LEU B 314 ASN B 322 1 9 SHEET 1 A 6 TYR A 105 VAL A 106 0 SHEET 2 A 6 VAL A 78 ILE A 81 1 N ALA A 80 O TYR A 105 SHEET 3 A 6 PHE A 43 ALA A 47 1 N ILE A 44 O PHE A 79 SHEET 4 A 6 LYS A 2 LEU A 6 1 N LEU A 6 O LEU A 45 SHEET 5 A 6 GLY A 254 GLU A 259 -1 O VAL A 258 N PHE A 3 SHEET 6 A 6 LYS A 262 GLU A 267 -1 O VAL A 266 N PHE A 255 SHEET 1 B 3 GLY A 108 ARG A 110 0 SHEET 2 B 3 TYR A 129 TYR A 135 -1 O VAL A 131 N GLY A 108 SHEET 3 B 3 LEU A 119 ARG A 123 -1 N THR A 120 O LYS A 132 SHEET 1 C 7 GLY A 108 ARG A 110 0 SHEET 2 C 7 TYR A 129 TYR A 135 -1 O VAL A 131 N GLY A 108 SHEET 3 C 7 LEU A 138 MET A 143 -1 O ILE A 140 N GLY A 133 SHEET 4 C 7 ALA A 168 HIS A 173 1 O ILE A 169 N HIS A 141 SHEET 5 C 7 TYR A 201 GLY A 205 1 O TYR A 201 N LEU A 170 SHEET 6 C 7 SER A 218 TYR A 222 1 O PRO A 219 N TYR A 202 SHEET 7 C 7 TYR A 211 TYR A 215 -1 N THR A 213 O VAL A 220 SHEET 1 D 5 PHE A 245 TYR A 249 0 SHEET 2 D 5 VAL A 236 TRP A 240 -1 N GLU A 239 O LYS A 246 SHEET 3 D 5 PHE A 273 GLY A 280 1 O ASP A 275 N TYR A 238 SHEET 4 D 5 TYR A 301 TRP A 308 1 O ASN A 305 N VAL A 276 SHEET 5 D 5 TYR A 325 ARG A 332 1 O ASP A 329 N ILE A 306 SHEET 1 E 6 TYR B 105 VAL B 106 0 SHEET 2 E 6 VAL B 78 ALA B 80 1 N ALA B 80 O TYR B 105 SHEET 3 E 6 PHE B 43 ILE B 46 1 N ILE B 44 O PHE B 79 SHEET 4 E 6 LYS B 2 LEU B 6 1 N LEU B 6 O LEU B 45 SHEET 5 E 6 GLY B 254 GLU B 259 -1 O VAL B 258 N PHE B 3 SHEET 6 E 6 LYS B 262 GLU B 267 -1 O VAL B 266 N PHE B 255 SHEET 1 F 3 GLY B 108 ARG B 110 0 SHEET 2 F 3 TYR B 129 TYR B 135 -1 O VAL B 131 N GLY B 108 SHEET 3 F 3 LEU B 119 ARG B 123 -1 N GLU B 122 O LEU B 130 SHEET 1 G 7 GLY B 108 ARG B 110 0 SHEET 2 G 7 TYR B 129 TYR B 135 -1 O VAL B 131 N GLY B 108 SHEET 3 G 7 LEU B 138 GLY B 142 -1 O ILE B 140 N GLY B 133 SHEET 4 G 7 ALA B 168 HIS B 173 1 O ILE B 169 N HIS B 141 SHEET 5 G 7 TYR B 201 GLY B 205 1 O ALA B 203 N LEU B 170 SHEET 6 G 7 SER B 218 TYR B 222 1 O VAL B 221 N TYR B 202 SHEET 7 G 7 TYR B 211 TYR B 215 -1 N TYR B 215 O SER B 218 SHEET 1 H 5 PHE B 245 TYR B 249 0 SHEET 2 H 5 VAL B 236 TRP B 240 -1 N GLU B 239 O LYS B 246 SHEET 3 H 5 PHE B 273 LYS B 279 1 O ASP B 275 N TYR B 238 SHEET 4 H 5 TYR B 301 GLY B 307 1 O GLY B 307 N ILE B 278 SHEET 5 H 5 TYR B 325 ASP B 329 1 O TYR B 325 N VAL B 302 LINK OD1 ASP A 8 MN MN A 402 1555 1555 2.15 LINK NE2 HIS A 10 MN MN A 402 1555 1555 2.27 LINK OD1 ASP A 49 MN MN A 401 1555 1555 2.31 LINK OD1 ASP A 49 MN MN A 402 1555 1555 2.19 LINK OD1 ASN A 84 MN MN A 401 1555 1555 2.26 LINK NE2 HIS A 173 MN MN A 401 1555 1555 2.37 LINK ND1 HIS A 206 MN MN A 401 1555 1555 2.45 LINK NE2 HIS A 208 MN MN A 402 1555 1555 2.44 LINK MN MN A 401 O HOH A 602 1555 1555 2.72 LINK MN MN A 401 O HOH A 630 1555 1555 2.31 LINK MN MN A 402 O HOH A 630 1555 1555 2.30 LINK OD1 ASP B 8 MN MN B 403 1555 1555 2.18 LINK NE2 HIS B 10 MN MN B 403 1555 1555 2.27 LINK OD2 ASP B 49 MN MN B 403 1555 1555 2.13 LINK OD2 ASP B 49 MN MN B 404 1555 1555 2.42 LINK OD1 ASN B 84 MN MN B 404 1555 1555 2.27 LINK NE2 HIS B 173 MN MN B 404 1555 1555 2.26 LINK NE2 HIS B 208 MN MN B 403 1555 1555 2.28 LINK MN MN B 403 O HOH B 605 1555 1555 2.36 LINK MN MN B 404 O HOH B 601 1555 1555 2.51 LINK MN MN B 404 O HOH B 605 1555 1555 2.23 SITE 1 AC1 7 ASP A 49 ASN A 84 HIS A 173 HIS A 206 SITE 2 AC1 7 MN A 402 HOH A 602 HOH A 630 SITE 1 AC2 7 ASP A 8 HIS A 10 ASP A 49 HIS A 208 SITE 2 AC2 7 MN A 401 HOH A 602 HOH A 630 SITE 1 AC3 6 ASP B 8 HIS B 10 ASP B 49 HIS B 208 SITE 2 AC3 6 MN B 404 HOH B 605 SITE 1 AC4 7 ASP B 49 ASN B 84 HIS B 173 HIS B 206 SITE 2 AC4 7 MN B 403 HOH B 601 HOH B 605 CRYST1 74.960 88.570 144.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006897 0.00000