PDB Short entry for 1S9M HEADER TRANSCRIPTION/DNA 19-MAY-99 1S9M TITLE STRUCTURAL MODEL OF THE P170R HUMAN SOX9-DNA COMPLEX CAVEAT 1S9M INCORRECT CHIRALITY AT C3*(A5) AND C3*(G9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR SOX9); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 TISSUE: TESTIS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES KEYWDS COMPLEX (DNA-BINDING PROTEIN/DNA) EXPDTA THEORETICAL MODEL AUTHOR S.RANGANATHAN,S.MCDOWALL,A.ARGENTARO,P.WELLER,S.MERTIN, AUTHOR 2 S.MANSOUR,J.TOLMIE,V.HARLEY REVDAT 4 01-APR-03 1S9M 1 JRNL REVDAT 3 03-MAY-00 1S9M 1 DBREF SEQADV REVDAT 2 15-JAN-00 1S9M 1 JRNL HEADER REVDAT 1 24-MAY-99 1S9M 0 JRNL AUTH S.MCDOWALL,A.ARGENTARO,S.RANGANATHAN,P.WELLER, JRNL AUTH 2 S.MERTIN,S.MANSOUR,J.TOLMIE,V.HARLEY JRNL TITL FUNCTIONAL AND STRUCTURAL STUDIES OF WILD TYPE JRNL TITL 2 SOX9 AND MUTATIONS CAUSING CAMPOMELIC DYSPLASIA. JRNL REF J.BIOL.CHEM. V. 274 24023 1999 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.H.WERNER,J.R.HUTH,A.M.GRONENBORN,G.M.CLORE REMARK 1 TITL THE MOLECULAR BASIS OF HUMAN 46X,Y SEX REVERSAL REMARK 1 TITL 2 REVEALED FROM THE THREE-DIMENSIONAL SOLUTION REMARK 1 TITL 3 STRUCTURE OF THE HUMAN SRY-DNA COMPLEX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 81 704 1995 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ITERATIVE REFINEMENT USING SIMULATED REMARK 3 ANNEALING CARRIED OUT FOR "HOT SPOTS" IDENTIFIED BY PROCHECK REMARK 4 REMARK 4 1S9M COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-1999. REMARK 100 THE RCSB ID CODE IS RCSB001086. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE MUTANT SOX9 PROTEIN WAS BUILT BY HOMOLOGY MODELLING REMARK 220 WHILE THE DNA COORDINATES WERE TRANSFERRED FROM THE REMARK 220 HUMAN SRY-DNA COMPLEX (1HRY) REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. DBREF 1S9M A 1 77 UNP P48436 SOX9_HUMAN 101 177 SEQADV 1S9M ARG A 70 UNP P48436 PRO 170 CONFLICT SEQRES 1 A 77 ASN LYS PRO HIS VAL LYS ARG PRO MET ASN ALA PHE MET SEQRES 2 A 77 VAL TRP ALA GLN ALA ALA ARG ARG LYS LEU ALA ASP GLN SEQRES 3 A 77 TYR PRO HIS LEU HIS ASN ALA GLU LEU SER LYS THR LEU SEQRES 4 A 77 GLY LYS LEU TRP ARG LEU LEU ASN GLU SER GLU LYS ARG SEQRES 5 A 77 PRO PHE VAL GLU GLU ALA GLU ARG LEU ARG VAL GLN HIS SEQRES 6 A 77 LYS LYS ASP HIS ARG ASP TYR LYS TYR GLN PRO ARG SEQRES 1 B 8 G C A C A A A C SEQRES 1 C 8 G T T T G T G C HELIX 1 1 ALA A 11 TYR A 27 1 17 HELIX 2 2 GLU A 34 ARG A 44 1 11 HELIX 3 3 GLU A 48 HIS A 69 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000