PDB Short entry for 1SBS HEADER MONOCLONAL ANTIBODY 08-APR-98 1SBS TITLE CRYSTAL STRUCTURE OF AN ANTI-HCG FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTIBODY 3A2; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MONOCLONAL ANTIBODY 3A2; COMPND 7 CHAIN: L; COMPND 8 FRAGMENT: FAB FRAGMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: HYBRIDOMA CELL; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 OTHER_DETAILS: HYBRIDOMA CELL KEYWDS MONOCLONAL ANTIBODY, FAB-FRAGMENT, REPRODUCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.FOTINOU,J.BEAUCHAMP,P.EMSLEY,A.DEHAAN,W.J.G.SCHIELEN,E.BOS, AUTHOR 2 N.W.ISAACS REVDAT 5 09-AUG-23 1SBS 1 REMARK SEQADV REVDAT 4 13-JUL-11 1SBS 1 VERSN REVDAT 3 24-FEB-09 1SBS 1 VERSN REVDAT 2 01-APR-03 1SBS 1 JRNL REVDAT 1 13-APR-99 1SBS 0 JRNL AUTH C.FOTINOU,J.BEAUCHAMP,P.EMSLEY,A.DEHAAN,W.J.SCHIELEN,E.BOS, JRNL AUTH 2 N.W.ISAACS JRNL TITL STRUCTURE OF AN FAB FRAGMENT AGAINST A C-TERMINAL PEPTIDE OF JRNL TITL 2 HCG AT 2.0 A RESOLUTION. JRNL REF J.BIOL.CHEM. V. 273 22515 1998 JRNL REFN ISSN 0021-9258 JRNL PMID 9712877 JRNL DOI 10.1074/JBC.273.35.22515 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1354 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 944 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: POSITIONAL REFINEMENT WITH X-PLOR. REMARK 3 R_CRYS=36%, R_FREE=41%. UNRESTRAINED B-FACTOR REFINEMENT USING REMARK 3 SFALL. R_CRYS=23.8%, R_FREE=33.8%. THE REFINEMENT CONTINUED REMARK 3 USING ONLY REFMAC. R_CRYS=18.2%, R_FREE=24.1% THE SEARCHING FOR REMARK 3 WATER POSITIONS WAS PERFORMED USING ARP. REMARK 4 REMARK 4 1SBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-94 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, ROTAVATA/AGROVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1IGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.06833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.13667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.13667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.06833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 129.55740 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 330.34167 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 534 O HOH H 565 1.99 REMARK 500 O HOH H 308 O HOH H 652 2.16 REMARK 500 O HOH H 248 O HOH H 420 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 654 O HOH L 453 6666 1.76 REMARK 500 O HOH H 527 O HOH L 357 6666 1.93 REMARK 500 OE2 GLU L 85 CA GLY L 158 5666 1.97 REMARK 500 O HOH H 639 O HOH L 320 6666 1.97 REMARK 500 OE1 GLU L 85 CA GLY L 158 5666 2.01 REMARK 500 CD GLU L 85 CA GLY L 158 5666 2.08 REMARK 500 O HOH H 544 O HOH H 544 5676 2.11 REMARK 500 O HOH H 597 O HOH H 597 5676 2.13 REMARK 500 O HOH H 326 O HOH L 650 6666 2.13 REMARK 500 OE1 GLU L 85 O GLY L 158 5666 2.13 REMARK 500 OE2 GLU L 85 N GLY L 158 5666 2.14 REMARK 500 O HOH H 518 O HOH L 408 6666 2.15 REMARK 500 O HOH L 404 O HOH L 469 5666 2.17 REMARK 500 OE1 GLU L 85 C GLY L 158 5666 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO H 222 CD PRO H 222 N 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL H 12 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG H 89 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG H 198 CB - CG - CD ANGL. DEV. = 22.9 DEGREES REMARK 500 ARG H 198 CG - CD - NE ANGL. DEV. = 13.6 DEGREES REMARK 500 LEU L 89 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ASN L 163 CA - C - N ANGL. DEV. = 17.9 DEGREES REMARK 500 GLY L 164 CA - C - O ANGL. DEV. = 16.9 DEGREES REMARK 500 GLY L 164 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 52 -155.52 -95.72 REMARK 500 ALA L 57 -34.85 65.22 REMARK 500 ALA L 90 167.08 176.50 REMARK 500 LYS L 205 81.96 12.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN L 163 -10.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H -1 DBREF 1SBS H 1 222 GB 1042226 AAB34981 1 218 DBREF 1SBS L 3 220 GB 1407830 AAB04554 3 219 SEQADV 1SBS ASN H 3 GB 1042226 LYS 3 CONFLICT SEQADV 1SBS LEU H 20 GB 1042226 VAL 20 CONFLICT SEQADV 1SBS THR H 28 GB 1042226 ALA 28 CONFLICT SEQADV 1SBS ASN H 31 GB 1042226 TYR 31 CONFLICT SEQADV 1SBS LYS H 43 GB 1042226 ARG 43 CONFLICT SEQADV 1SBS VAL H 48 GB 1042226 ILE 48 CONFLICT SEQADV 1SBS ASP H 50 GB 1042226 GLU 50 CONFLICT SEQADV 1SBS LEU H 53 GB 1042226 PHE 53 CONFLICT SEQADV 1SBS ALA H 59 GB 1042226 INSERTION SEQADV 1SBS LEU H 61 GB 1042226 HIS 60 CONFLICT SEQADV 1SBS GLY H 101 GB 1042226 GLU 100 CONFLICT SEQADV 1SBS ALA H 102 GB 1042226 GLY 101 CONFLICT SEQADV 1SBS TYR H 103 GB 1042226 ILE 102 CONFLICT SEQADV 1SBS ARG H 105 GB 1042226 INSERTION SEQADV 1SBS TYR H 106 GB 1042226 INSERTION SEQADV 1SBS ASP H 107 GB 1042226 INSERTION SEQADV 1SBS ALA H 109 GB 1042226 PRO 105 CONFLICT SEQADV 1SBS MET H 110 GB 1042226 PHE 106 CONFLICT SEQADV 1SBS ASP H 111 GB 1042226 ALA 107 CONFLICT SEQADV 1SBS SER H 118 GB 1042226 LEU 114 CONFLICT SEQADV 1SBS SER H 123 GB 1042226 ALA 119 CONFLICT SEQADV 1SBS PRO H 197 GB 1042226 THR 193 CONFLICT SEQADV 1SBS ARG H 198 GB 1042226 TRP 194 CONFLICT SEQADV 1SBS SER L 5 GB 1407830 THR 5 CONFLICT SEQADV 1SBS VAL L 15 GB 1407830 ALA 15 CONFLICT SEQADV 1SBS THR L 22 GB 1407830 SER 22 CONFLICT SEQADV 1SBS TYR L 31 GB 1407830 ASN 31 CONFLICT SEQADV 1SBS SER L 32 GB 1407830 THR 32 CONFLICT SEQADV 1SBS SER L 33 GB 1407830 TRP 33 CONFLICT SEQADV 1SBS ASN L 34 GB 1407830 THR 34 CONFLICT SEQADV 1SBS GLN L 35 GB 1407830 ARG 35 CONFLICT SEQADV 1SBS MET L 36 GB 1407830 LYS 36 CONFLICT SEQADV 1SBS GLU L 85 GB 1407830 GLN 85 CONFLICT SEQADV 1SBS GLN L 95 GB 1407830 LYS 95 CONFLICT SEQADV 1SBS TYR L 97 GB 1407830 INSERTION SEQADV 1SBS HIS L 98 GB 1407830 INSERTION SEQADV 1SBS PRO L 101 GB 1407830 ASN 99 CONFLICT SEQADV 1SBS L GB 1407830 PRO 101 DELETION SEQADV 1SBS SER L 106 GB 1407830 GLY 105 CONFLICT SEQADV 1SBS LYS L 109 GB 1407830 GLN 108 CONFLICT SEQRES 1 H 222 GLU VAL ASN LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 222 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 222 PHE THR PHE SER ASN TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 222 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA ASP ILE ARG SEQRES 5 H 222 LEU LYS SER ASN ASN TYR ALA THR LEU TYR ALA GLU SER SEQRES 6 H 222 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 222 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 222 ASP THR GLY ILE TYR TYR CYS THR ARG GLY ALA TYR TYR SEQRES 9 H 222 ARG TYR ASP TYR ALA MET ASP TYR TRP GLY GLN GLY THR SEQRES 10 H 222 SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER SEQRES 11 H 222 VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SEQRES 12 H 222 SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 222 PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SEQRES 14 H 222 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 222 ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SEQRES 16 H 222 SER PRO ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA SEQRES 17 H 222 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL SEQRES 18 H 222 PRO SEQRES 1 L 220 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 220 SER VAL GLY GLU LYS VAL THR MET THR CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU TYR SER SER ASN GLN MET ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL GLU ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR HIS SER TYR PRO PHE THR PHE SEQRES 9 L 220 GLY SER GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS HET SO4 H -1 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *944(H2 O) HELIX 1 1 PHE H 29 ASN H 31 5 3 HELIX 2 2 LYS H 54 ASN H 56 5 3 HELIX 3 3 ASP H 76 LYS H 78 5 3 HELIX 4 4 ALA H 90 ASP H 92 5 3 HELIX 5 5 ASN H 165 GLY H 167 5 3 HELIX 6 6 PRO H 210 SER H 212 5 3 HELIX 7 7 ALA L 86 ASP L 88 5 3 HELIX 8 8 SER L 128 SER L 133 1 6 HELIX 9 9 LYS L 189 ARG L 194 1 6 SHEET 1 A 4 ASN H 3 SER H 7 0 SHEET 2 A 4 MET H 18 SER H 25 -1 N SER H 25 O ASN H 3 SHEET 3 A 4 SER H 80 MET H 85 -1 N MET H 85 O MET H 18 SHEET 4 A 4 PHE H 70 ASP H 75 -1 N ASP H 75 O SER H 80 SHEET 1 B 6 GLY H 10 VAL H 12 0 SHEET 2 B 6 THR H 117 VAL H 121 1 N THR H 120 O GLY H 10 SHEET 3 B 6 GLY H 94 ARG H 100 -1 N TYR H 96 O THR H 117 SHEET 4 B 6 MET H 34 SER H 40 -1 N GLN H 39 O ILE H 95 SHEET 5 B 6 GLY H 44 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 6 B 6 THR H 60 TYR H 62 -1 N LEU H 61 O ASP H 50 SHEET 1 C 4 SER H 130 LEU H 134 0 SHEET 2 C 4 MET H 145 TYR H 155 -1 N LYS H 153 O SER H 130 SHEET 3 C 4 TYR H 185 PRO H 194 -1 N VAL H 193 O VAL H 146 SHEET 4 C 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 D 3 THR H 161 TRP H 164 0 SHEET 2 D 3 THR H 204 HIS H 209 -1 N ALA H 208 O THR H 161 SHEET 3 D 3 THR H 214 LYS H 219 -1 N LYS H 218 O CYS H 205 SHEET 1 E 2 VAL H 179 GLN H 181 0 SHEET 2 E 2 LEU H 184 THR H 186 -1 N THR H 186 O VAL H 179 SHEET 1 F 2 THR H 99 GLY H 101 0 SHEET 2 F 2 MET H 110 TRP H 113 -1 N TYR H 112 O ARG H 100 SHEET 1 G 4 MET L 4 SER L 7 0 SHEET 2 G 4 VAL L 19 SER L 25 -1 N LYS L 24 O SER L 5 SHEET 3 G 4 ASP L 76 ILE L 81 -1 N ILE L 81 O VAL L 19 SHEET 4 G 4 PHE L 68 SER L 73 -1 N SER L 73 O ASP L 76 SHEET 1 H 5 SER L 10 SER L 14 0 SHEET 2 H 5 THR L 108 LYS L 113 1 N LYS L 109 O LEU L 11 SHEET 3 H 5 ALA L 90 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 H 5 LEU L 39 GLN L 44 -1 N GLN L 44 O VAL L 91 SHEET 5 H 5 LYS L 51 ILE L 54 -1 N ILE L 54 O TRP L 41 SHEET 1 I 4 THR L 120 PHE L 124 0 SHEET 2 I 4 GLY L 135 ASN L 143 -1 N ASN L 143 O THR L 120 SHEET 3 I 4 MET L 181 THR L 188 -1 N LEU L 187 O ALA L 136 SHEET 4 I 4 VAL L 165 TRP L 169 -1 N SER L 168 O SER L 182 SHEET 1 J 4 GLU L 160 GLN L 162 0 SHEET 2 J 4 ASN L 151 ILE L 156 -1 N ILE L 156 O GLU L 160 SHEET 3 J 4 SER L 197 THR L 203 -1 N THR L 203 O ASN L 151 SHEET 4 J 4 ILE L 211 ASN L 216 -1 N PHE L 215 O TYR L 198 SSBOND 1 CYS H 22 CYS H 98 1555 1555 2.05 SSBOND 2 CYS H 150 CYS H 205 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 94 1555 1555 2.07 SSBOND 4 CYS L 140 CYS L 200 1555 1555 2.05 CISPEP 1 PHE H 156 PRO H 157 0 -3.98 CISPEP 2 GLU H 158 PRO H 159 0 -0.51 CISPEP 3 ARG H 198 PRO H 199 0 8.67 CISPEP 4 SER L 7 PRO L 8 0 -6.99 CISPEP 5 TYR L 100 PRO L 101 0 -3.71 CISPEP 6 TYR L 146 PRO L 147 0 4.80 SITE 1 AC1 8 ARG H 52 ARG H 105 TYR H 108 SER H 138 SITE 2 AC1 8 GLN H 141 HOH H 266 HOH H 508 HOH H 666 CRYST1 74.800 74.800 198.205 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013369 0.007719 0.000000 0.00000 SCALE2 0.000000 0.015437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005045 0.00000