PDB Short entry for 1SGO HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-04 1SGO TITLE NMR STRUCTURE OF THE HUMAN C14ORF129 GENE PRODUCT, HSPC210. NORTHEAST TITLE 2 STRUCTURAL GENOMICS TARGET HR969. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN C14ORF129; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSPC210; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C14ORF129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(LAMDA DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14 KEYWDS HR969, HUMAN PROTEIN, NESG, STRUCTURAL GENOMICS, HS.4104 HOMO KEYWDS 2 SAPIENS, NESG CLUSTER ID 18152., PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,R.XIAO,L.-Y.SHIH,L.-C.MA,T.B.ACTON, AUTHOR 2 G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 02-MAR-22 1SGO 1 REMARK REVDAT 3 24-FEB-09 1SGO 1 VERSN REVDAT 2 25-JAN-05 1SGO 1 AUTHOR KEYWDS REMARK REVDAT 1 04-MAY-04 1SGO 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,R.XIAO,L.-Y.SHIH,L.-C.MA,T.B.ACTON, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF THE HUMAN C14ORF129 GENE PRODUCT, HSPC210. JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS TARGET HR969. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.98, CNS 1.1 REMARK 3 AUTHORS : T.D. GODDARD, D.G. KNELLER (SPARKY), A. BRUNGER REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1132 RESTRAINTS. SUMMARY OF REMARK 3 EXPERIMENTAL CONSTRAINTS: DISTANCE RESTRAINTS: TOTAL = 1000; INTRA- REMARK 3 RESIDUE [I=J] = 23; SEQUENTIAL [(I-J)=1] = 239; MEDIUM RANGE [1<(I- REMARK 3 J)<5] = 304; LONG RANGE [(I-J)>=5] = 382; HYDROGEN BOND RESTRAINTS REMARK 3 = 52 (2 PER H-BOND); NUMBER OF DISTANCE RESTRAINTS PER RESIDUE = REMARK 3 9.7 (RESIDES 33-135); DIHEDRAL-ANGLE RESTRAINTS = 132 (66 PHI, 66 REMARK 3 PSI); TOTAL NUMBER OF RESTRAINTS PER RESIDUE = 10.3 (RESIDES 33- REMARK 3 135); NUMBER OF LONG RANGE RESTRA REMARK 3 NTS PER RESIDUE = 3.7; NUMBER OF STRUCTURES COMPUTED = 20; NUMBER REMARK 3 OF STRUCTURES USED = 20. AVERAGE DISTANCE VIOLATIONS >0.1 ANG = REMARK 3 2.3; AVERAGE R.M.S. DISTANCE VIOLATION = 0.011 ANG; MAXIMUM NUMBER REMARK 3 OF DISTANCE VIOLATIONS 4. AVERAGE DIHEDRAL ANGLE VIOLATIONS: >1 REMARK 3 DEG = 1.5; MAX NUMBER OF DIHEDRAL ANGLE VIOLATIONS = 4; AVERAGE REMARK 3 R.M.S. ANGLE VIOLATION = 0.17 DEG. RMSD VALUES: BACKBONE ATOMS (N, REMARK 3 C,C',O, RESIDUES 33-135) = 0.67 ANG; ALL HEAVY ATOMS = 1.21 ANG; REMARK 3 PROCHECK (RESDIUES 31-135): MOST FAVORED REMARK 3 EGIONS = 86%; ADDITIONAL ALLOWED REGIONS = 13%; GENEROUSLY ALLOWED REMARK 3 REGIONS = 1%; DISALLOWED REGIONS = 0%. REMARK 3 REMARK 3 THE UNSTRUCTURED 10 RESIDUE N-TERMINAL HIS TAG (MGHHHHHHSH) WAS REMARK 3 NOT INCLUDED IN THE STRUCTURE CALCULATION. REMARK 4 REMARK 4 1SGO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM HSPC210, U-15N, 13C; 20 MM REMARK 210 MES, 100 MM NACL, 10 MM DTT, 5 REMARK 210 MM CACL2, 0.02% NAN3; 1MM REMARK 210 HSPC210, U-15N, 13C; 20 MM MES, REMARK 210 100 MM NACL, 10 MM DTT, 5 MM REMARK 210 CACL2, 0.02% NAN3; 1MM HSPC210, REMARK 210 U-15N, 5%-13C; 20 MM MES, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA; 4D_13C- REMARK 210 SEPARATED_NOESY; 13C_HSQC; H/D REMARK 210 EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, AUTOSTRUCTURE 1.1.2, REMARK 210 TALOS 199.019.15.27, X-PLOR REMARK 210 XPLOR-NIH-2.0.6, VNMR 6.1C REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 131 HZ3 LYS A 134 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 -158.30 -97.53 REMARK 500 1 LEU A 57 -93.82 -135.12 REMARK 500 1 CYS A 59 112.89 -164.88 REMARK 500 1 ASP A 61 -71.28 68.13 REMARK 500 1 GLN A 100 30.46 -94.14 REMARK 500 1 LEU A 110 -60.76 -96.62 REMARK 500 2 PRO A 7 -158.15 -91.48 REMARK 500 2 MET A 8 -149.88 -96.66 REMARK 500 2 LEU A 10 -47.38 75.62 REMARK 500 2 SER A 12 -176.00 67.31 REMARK 500 2 LYS A 31 112.21 -162.41 REMARK 500 2 VAL A 48 -168.20 -122.45 REMARK 500 2 LEU A 57 -102.70 -127.84 REMARK 500 2 ASP A 61 -4.96 74.62 REMARK 500 2 ALA A 91 -155.23 -174.91 REMARK 500 3 ASP A 4 -97.21 -113.54 REMARK 500 3 CYS A 5 -56.99 -167.29 REMARK 500 3 GLU A 17 -80.79 -123.08 REMARK 500 3 GLU A 21 118.67 69.77 REMARK 500 3 LEU A 22 86.31 61.80 REMARK 500 3 VAL A 48 -168.73 -119.30 REMARK 500 3 LEU A 57 -163.56 -122.75 REMARK 500 3 CYS A 59 84.21 -157.75 REMARK 500 3 ASP A 61 -56.54 -166.85 REMARK 500 4 PRO A 7 -73.45 -71.89 REMARK 500 4 SER A 14 102.52 -58.52 REMARK 500 4 LEU A 22 -57.61 -139.94 REMARK 500 4 VAL A 48 -168.63 -122.71 REMARK 500 4 MET A 51 118.62 -164.90 REMARK 500 4 LEU A 57 -157.20 -135.94 REMARK 500 4 ASP A 61 -83.51 61.77 REMARK 500 5 MET A 8 -156.26 -136.52 REMARK 500 5 SER A 11 80.54 -161.31 REMARK 500 5 PHE A 16 18.02 -147.33 REMARK 500 5 ASN A 23 -55.63 71.16 REMARK 500 5 THR A 28 93.30 66.85 REMARK 500 5 MET A 30 -95.51 68.01 REMARK 500 5 VAL A 48 -167.70 -125.54 REMARK 500 5 LEU A 57 -93.34 -120.83 REMARK 500 5 CYS A 59 155.94 176.74 REMARK 500 5 ALA A 60 -80.30 -172.36 REMARK 500 5 ASP A 61 -52.78 -121.95 REMARK 500 5 GLN A 100 42.44 -93.25 REMARK 500 6 ASP A 4 -98.98 64.52 REMARK 500 6 CYS A 5 -31.48 167.78 REMARK 500 6 ASN A 6 65.05 60.63 REMARK 500 6 SER A 14 79.81 59.05 REMARK 500 6 LEU A 22 -79.69 -71.29 REMARK 500 6 THR A 28 -73.26 73.05 REMARK 500 6 VAL A 48 -167.98 -119.89 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR969 RELATED DB: TARGETDB DBREF 1SGO A 1 139 UNP Q9P0R6 CN129_HUMAN 1 139 SEQRES 1 A 139 MET GLU THR ASP CYS ASN PRO MET GLU LEU SER SER MET SEQRES 2 A 139 SER GLY PHE GLU GLU GLY SER GLU LEU ASN GLY PHE GLU SEQRES 3 A 139 GLY THR ASP MET LYS ASP MET ARG LEU GLU ALA GLU ALA SEQRES 4 A 139 VAL VAL ASN ASP VAL LEU PHE ALA VAL ASN ASN MET PHE SEQRES 5 A 139 VAL SER LYS SER LEU ARG CYS ALA ASP ASP VAL ALA TYR SEQRES 6 A 139 ILE ASN VAL GLU THR LYS GLU ARG ASN ARG TYR CYS LEU SEQRES 7 A 139 GLU LEU THR GLU ALA GLY LEU LYS VAL VAL GLY TYR ALA SEQRES 8 A 139 PHE ASP GLN VAL ASP ASP HIS LEU GLN THR PRO TYR HIS SEQRES 9 A 139 GLU THR VAL TYR SER LEU LEU ASP THR LEU SER PRO ALA SEQRES 10 A 139 TYR ARG GLU ALA PHE GLY ASN ALA LEU LEU GLN ARG LEU SEQRES 11 A 139 GLU ALA LEU LYS ARG ASP GLY GLN SER HELIX 1 1 ASP A 32 LEU A 45 1 14 HELIX 2 2 PHE A 46 VAL A 48 5 3 HELIX 3 3 VAL A 107 SER A 115 1 9 HELIX 4 4 SER A 115 ASP A 136 1 22 SHEET 1 A 3 ASN A 50 VAL A 53 0 SHEET 2 A 3 VAL A 63 GLU A 69 -1 O ASN A 67 N PHE A 52 SHEET 3 A 3 CYS A 59 ALA A 60 -1 N ALA A 60 O VAL A 63 SHEET 1 B 5 ASN A 50 VAL A 53 0 SHEET 2 B 5 VAL A 63 GLU A 69 -1 O ASN A 67 N PHE A 52 SHEET 3 B 5 ARG A 75 THR A 81 -1 O LEU A 78 N ILE A 66 SHEET 4 B 5 GLY A 84 GLY A 89 -1 O LYS A 86 N GLU A 79 SHEET 5 B 5 TYR A 103 HIS A 104 -1 O HIS A 104 N LEU A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000