PDB Short entry for 1SHC HEADER COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE) 27-MAR-96 1SHC TITLE SHC PTB DOMAIN COMPLEXED WITH A TRKA RECEPTOR PHOSPHOPEPTIDE, NMR, TITLE 2 MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTB DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRKA RECEPTOR PHOSPHOPEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: BL21 (DE3); SOURCE 6 CELL_LINE: BL21; SOURCE 7 GENE: PTB DOMAIN OF SHC; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 EXPRESSION_SYSTEM_GENE: PTB DOMAIN OF SHC; SOURCE 12 MOL_ID: 2 KEYWDS COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), PHOSPHOTYROSINE BINDING DOMAIN KEYWDS 2 (PTB), COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE) COMPLEX EXPDTA SOLUTION NMR AUTHOR M.-M.ZHOU,K.S.RAVICHANDRAN,E.T.OLEJNICZAK,A.M.PETROS,R.P.MEADOWS, AUTHOR 2 M.SATTLER,J.E.HARLAN,W.S.WADE,S.J.BURAKOFF,S.W.FESIK REVDAT 3 02-MAR-22 1SHC 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1SHC 1 VERSN REVDAT 1 15-MAY-97 1SHC 0 JRNL AUTH M.M.ZHOU,K.S.RAVICHANDRAN,E.F.OLEJNICZAK,A.M.PETROS, JRNL AUTH 2 R.P.MEADOWS,M.SATTLER,J.E.HARLAN,W.S.WADE,S.J.BURAKOFF, JRNL AUTH 3 S.W.FESIK JRNL TITL STRUCTURE AND LIGAND RECOGNITION OF THE PHOSPHOTYROSINE JRNL TITL 2 BINDING DOMAIN OF SHC. JRNL REF NATURE V. 378 584 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 8524391 JRNL DOI 10.1038/378584A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.M.ZHOU,B.HUANG,E.T.OLEJNICZAK,R.P.MEADOWS,S.B.SHUKER, REMARK 1 AUTH 2 M.MIYAZAKI,T.TRUB,S.E.SHOELSON,S.W.FESIK REMARK 1 TITL STRUCTURAL BASIS FOR IL-4 RECEPTOR PHOSPHOPEPTIDE REMARK 1 TITL 2 RECOGNITION BY THE IRS-1 PTB DOMAIN REMARK 1 REF NAT.STRUCT.BIOL. V. 3 388 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.TRUB,W.E.CHOI,G.WOLF,E.OTTINGER,Y.CHEN,M.WEISS, REMARK 1 AUTH 2 S.E.SHOELSON REMARK 1 TITL SPECIFICITY OF THE PTB DOMAIN OF SHC FOR BETA TURN-FORMING REMARK 1 TITL 2 PENTAPEPTIDE MOTIFS AMINO-TERMINAL TO PHOSPHOTYROSINE REMARK 1 REF J.BIOL.CHEM. V. 270 18205 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.M.KAVANAUGH,L.T.WILLIAMS REMARK 1 TITL AN ALTERNATIVE TO SH2 DOMAINS FOR BINDING REMARK 1 TITL 2 TYROSINE-PHOSPHORYLATED PROTEINS REMARK 1 REF SCIENCE V. 266 1862 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SET OF IDEAL BOND LENGTHS AND ANGLES REMARK 3 WERE USED DURING REFINEMENT: PARALLHDG.PRO IN X-PLOR. REMARK 4 REMARK 4 1SHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176371. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 15 -37.51 179.71 REMARK 500 MET A 16 -79.38 -54.61 REMARK 500 GLN A 18 -159.82 41.05 REMARK 500 LEU A 19 -179.58 58.00 REMARK 500 GLU A 22 29.87 -162.16 REMARK 500 TRP A 24 50.31 35.87 REMARK 500 THR A 25 60.58 -162.02 REMARK 500 HIS A 27 -169.59 -68.64 REMARK 500 PHE A 30 -88.72 38.46 REMARK 500 VAL A 31 -49.86 82.93 REMARK 500 THR A 35 -100.22 -60.67 REMARK 500 ARG A 36 -34.61 173.83 REMARK 500 TRP A 38 -166.37 54.34 REMARK 500 VAL A 50 174.79 -58.21 REMARK 500 SER A 51 93.61 -167.33 REMARK 500 LEU A 63 28.36 -140.71 REMARK 500 SER A 65 -172.84 -62.97 REMARK 500 LEU A 69 -73.11 -117.64 REMARK 500 ASP A 70 108.89 59.02 REMARK 500 GLU A 87 -68.06 -100.38 REMARK 500 PRO A 90 155.49 -44.97 REMARK 500 ALA A 92 -164.40 -72.85 REMARK 500 ALA A 95 39.62 177.44 REMARK 500 ARG A 98 36.95 -167.32 REMARK 500 ARG A 99 86.35 56.00 REMARK 500 PRO A 101 -83.74 -70.32 REMARK 500 CYS A 102 157.50 62.98 REMARK 500 SER A 103 -157.72 -65.30 REMARK 500 ARG A 104 67.13 -161.75 REMARK 500 PRO A 105 93.81 -48.15 REMARK 500 LEU A 106 125.52 -172.85 REMARK 500 SER A 107 -62.84 -105.09 REMARK 500 ILE A 109 83.19 -154.31 REMARK 500 LEU A 110 -168.69 173.70 REMARK 500 ARG A 112 140.81 175.65 REMARK 500 LEU A 115 53.19 -96.20 REMARK 500 THR A 128 94.96 -65.26 REMARK 500 SER A 129 36.53 73.49 REMARK 500 SER A 130 70.95 -152.04 REMARK 500 ASP A 137 -69.01 -104.89 REMARK 500 LYS A 139 70.89 54.23 REMARK 500 GLN A 140 -158.45 -142.18 REMARK 500 ILE A 142 92.61 -66.46 REMARK 500 ALA A 143 122.87 62.71 REMARK 500 HIS A 145 53.23 -157.46 REMARK 500 MET A 147 67.18 -168.44 REMARK 500 GLN A 148 -41.19 -158.63 REMARK 500 SER A 149 -87.95 -104.27 REMARK 500 ILE A 150 -154.13 50.89 REMARK 500 SER A 151 -52.93 -176.60 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 26 0.23 SIDE CHAIN REMARK 500 ARG A 36 0.24 SIDE CHAIN REMARK 500 ARG A 55 0.19 SIDE CHAIN REMARK 500 ARG A 67 0.29 SIDE CHAIN REMARK 500 ARG A 74 0.19 SIDE CHAIN REMARK 500 ARG A 79 0.32 SIDE CHAIN REMARK 500 ARG A 97 0.32 SIDE CHAIN REMARK 500 ARG A 98 0.25 SIDE CHAIN REMARK 500 ARG A 99 0.23 SIDE CHAIN REMARK 500 ARG A 104 0.30 SIDE CHAIN REMARK 500 ARG A 112 0.32 SIDE CHAIN REMARK 500 ARG A 175 0.19 SIDE CHAIN REMARK 500 ARG A 201 0.30 SIDE CHAIN REMARK 500 ARG A 207 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1SHC A 13 207 UNP P29353 SHC_HUMAN 126 317 DBREF 1SHC B 483 494 UNP P04629 NTRK1_HUMAN 489 500 SEQADV 1SHC MET A 16 UNP P29353 GLY 126 CONFLICT SEQADV 1SHC PTR B 490 UNP P04629 TYR 496 MODIFIED RESIDUE SEQRES 1 A 195 GLY SER HIS MET GLY GLN LEU GLY GLY GLU GLU TRP THR SEQRES 2 A 195 ARG HIS GLY SER PHE VAL ASN LYS PRO THR ARG GLY TRP SEQRES 3 A 195 LEU HIS PRO ASN ASP LYS VAL MET GLY PRO GLY VAL SER SEQRES 4 A 195 TYR LEU VAL ARG TYR MET GLY CYS VAL GLU VAL LEU GLN SEQRES 5 A 195 SER MET ARG ALA LEU ASP PHE ASN THR ARG THR GLN VAL SEQRES 6 A 195 THR ARG GLU ALA ILE SER LEU VAL CYS GLU ALA VAL PRO SEQRES 7 A 195 GLY ALA LYS GLY ALA THR ARG ARG ARG LYS PRO CYS SER SEQRES 8 A 195 ARG PRO LEU SER SER ILE LEU GLY ARG SER ASN LEU LYS SEQRES 9 A 195 PHE ALA GLY MET PRO ILE THR LEU THR VAL SER THR SER SEQRES 10 A 195 SER LEU ASN LEU MET ALA ALA ASP CYS LYS GLN ILE ILE SEQRES 11 A 195 ALA ASN HIS HIS MET GLN SER ILE SER PHE ALA SER GLY SEQRES 12 A 195 GLY ASP PRO ASP THR ALA GLU TYR VAL ALA TYR VAL ALA SEQRES 13 A 195 LYS ASP PRO VAL ASN GLN ARG ALA CYS HIS ILE LEU GLU SEQRES 14 A 195 CYS PRO GLU GLY LEU ALA GLN ASP VAL ILE SER THR ILE SEQRES 15 A 195 GLY GLN ALA PHE GLU LEU ARG PHE LYS GLN TYR LEU ARG SEQRES 1 B 12 HIS ILE ILE GLU ASN PRO GLN PTR PHE SER ASP ALA MODRES 1SHC PTR B 490 TYR O-PHOSPHOTYROSINE HET PTR B 490 25 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 HIS A 40 MET A 46 1 7 HELIX 2 2 THR A 73 ALA A 88 1 16 HELIX 3 3 ALA A 187 GLU A 199 1 13 SHEET 1 A 5 GLY A 111 ASN A 114 0 SHEET 2 A 5 CYS A 59 VAL A 62 -1 N GLU A 61 O ARG A 112 SHEET 3 A 5 ALA A 176 LEU A 180 -1 N CYS A 177 O VAL A 60 SHEET 4 A 5 VAL A 164 ALA A 168 -1 N ALA A 168 O ALA A 176 SHEET 5 A 5 PHE A 152 SER A 154 -1 N SER A 154 O ALA A 165 SHEET 1 B 4 GLN A 140 ILE A 142 0 SHEET 2 B 4 SER A 130 ALA A 135 -1 N ALA A 135 O GLN A 140 SHEET 3 B 4 ALA A 118 SER A 127 -1 N SER A 127 O SER A 130 SHEET 4 B 4 VAL A 50 MET A 57 -1 N TYR A 56 O GLY A 119 LINK C GLN B 489 N PTR B 490 1555 1555 1.30 LINK C PTR B 490 N PHE B 491 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000