PDB Short entry for 1SII HEADER OXIDOREDUCTASE 29-FEB-04 1SII TITLE AGAO IN COVALENT COMPLEX WITH THE INHIBITOR NOBA ("4-(2-NAPHTHYLOXY)- TITLE 2 2-BUTYN-1-AMINE") COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLETHYLAMINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINE OXIDASE; COMPND 5 EC: 1.4.3.6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ARTHROBACTER GLOBIFORMIS COPPER AMINE OXIDASE (AGAO) COMPND 8 WITH MODIFIED AMINO ACID 382 TPQ - 4-(2-NAPHTHYLOXY)-2-BUTYN-1-AMINE COMPND 9 MOIETY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 GENE: ATCC8010, IFO12137; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAGAO2 KEYWDS CAO, CUAO, COPPER-CONTAINING, AMINE OXIDASE, TPQ, QUINONE, KEYWDS 2 TRIHYDROXYPHENYLALANINE QUINONE, NOBA, 4-(2-NAPHTHYLOXY)-2-BUTYN-1- KEYWDS 3 AMINE, 4-(ARYLOXY)-2-BUTYNAMINE, SUICIDE INHIBITION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GUSS,D.B.LANGLEY,A.P.DUFF REVDAT 5 11-OCT-17 1SII 1 REMARK REVDAT 4 10-AUG-11 1SII 1 HETATM REMARK SEQADV REVDAT 3 13-JUL-11 1SII 1 VERSN REVDAT 2 24-FEB-09 1SII 1 VERSN REVDAT 1 07-SEP-04 1SII 0 JRNL AUTH K.M.O'CONNELL,D.B.LANGLEY,E.M.SHEPARD,A.P.DUFF,H.B.JEON, JRNL AUTH 2 G.SUN,H.C.FREEMAN,J.M.GUSS,L.M.SAYRE,D.M.DOOLEY JRNL TITL DIFFERENTIAL INHIBITION OF SIX COPPER AMINE OXIDASES BY A JRNL TITL 2 FAMILY OF 4-(ARYLOXY)-2-BUTYNAMINES: EVIDENCE FOR A NEW MODE JRNL TITL 3 OF INACTIVATION. JRNL REF BIOCHEMISTRY V. 43 10965 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15323556 JRNL DOI 10.1021/BI0492004 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 81489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 323 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 495 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 2.11000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5053 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4539 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6884 ; 1.345 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10501 ; 0.796 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 749 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5712 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1097 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 839 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5438 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3063 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 388 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.018 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 198 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3087 ; 3.140 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5001 ; 4.459 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 6.340 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 8.471 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2843 4.6984 43.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.1380 REMARK 3 T33: 0.0804 T12: -0.0483 REMARK 3 T13: -0.0045 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4593 L22: 0.2824 REMARK 3 L33: -0.1295 L12: 0.3262 REMARK 3 L13: 0.2734 L23: 0.0188 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: -0.1313 S13: -0.0139 REMARK 3 S21: -0.0307 S22: -0.0716 S23: -0.0716 REMARK 3 S31: -0.0231 S32: 0.1358 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0076 -2.7952 14.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0894 REMARK 3 T33: 0.0427 T12: 0.0180 REMARK 3 T13: 0.0095 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2678 L22: -0.0356 REMARK 3 L33: 0.6996 L12: 0.0464 REMARK 3 L13: -0.2118 L23: -0.1952 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0805 S13: 0.0116 REMARK 3 S21: -0.0249 S22: 0.0139 S23: -0.0019 REMARK 3 S31: 0.0339 S32: 0.1631 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5323 21.3117 28.9919 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0752 REMARK 3 T33: 0.0835 T12: 0.0086 REMARK 3 T13: 0.0229 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: -0.8017 L22: 0.6259 REMARK 3 L33: -0.4655 L12: -0.1262 REMARK 3 L13: -0.6863 L23: -0.6980 REMARK 3 S TENSOR REMARK 3 S11: 0.1388 S12: 0.0838 S13: 0.1418 REMARK 3 S21: -0.0436 S22: 0.0673 S23: -0.0348 REMARK 3 S31: -0.1202 S32: 0.1775 S33: -0.2061 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0779 -0.4471 45.3268 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.0389 REMARK 3 T33: 0.0695 T12: -0.0048 REMARK 3 T13: -0.0115 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.3093 L22: 0.0286 REMARK 3 L33: 0.4481 L12: -0.0119 REMARK 3 L13: -0.2215 L23: -0.0507 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: -0.0496 S13: 0.0318 REMARK 3 S21: -0.0040 S22: -0.0060 S23: 0.0001 REMARK 3 S31: 0.0169 S32: 0.1062 S33: -0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MICROLITRES OF (AGAO 10 MG/ML, 50MM REMARK 280 HEPES PH 7.0, 5-FOLD MOLAR EXCESS OF NOBA, INCUBATED AT RT FOR REMARK 280 FOUR HOURS) PLUS 4 MICROLITRES OF THE RESERVOIR SOLUTION (1.5M REMARK 280 (NH4)2SO4, 260MICROMOLAR CUSO4, 100MM MES PH 6.5). CRYSTALS REMARK 280 CRYOPROTECTED BY GRADUAL, SUCCESSIVE TRANSFERS OVER 2 HOURS, REMARK 280 FINALLY TO A SOLUTION OF 1.5M (NH4)2SO4, 100MM MES PH 6.5, 2.5MM REMARK 280 EGTA, 30% GLYCEROL., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.03000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.30950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.03000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.30950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS HALF OF ONE BIOLOGICAL UNIT. REMARK 300 CRYSTALLOGRAPHIC SYMMETRY IS REQUIRED TO GENERATE THE OTHER HALF OF REMARK 300 THE DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.62375 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.22533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 PRO A 629 REMARK 465 SER A 630 REMARK 465 GLN A 631 REMARK 465 SER A 632 REMARK 465 GLY A 633 REMARK 465 SER A 634 REMARK 465 HIS A 635 REMARK 465 CYS A 636 REMARK 465 HIS A 637 REMARK 465 GLY A 638 REMARK 465 SER A 639 REMARK 465 ASN A 640 REMARK 465 TRP A 641 REMARK 465 SER A 642 REMARK 465 HIS A 643 REMARK 465 PRO A 644 REMARK 465 GLN A 645 REMARK 465 PHE A 646 REMARK 465 GLU A 647 REMARK 465 LYS A 648 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 161 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 142 -136.14 -128.79 REMARK 500 ASN A 236 15.85 -151.02 REMARK 500 LYS A 242 -18.36 84.59 REMARK 500 ILE A 271 -57.38 -126.15 REMARK 500 LEU A 303 85.45 66.86 REMARK 500 CYS A 315 -66.05 -132.23 REMARK 500 THR A 403 -152.65 -149.06 REMARK 500 ALA A 442 57.05 -148.98 REMARK 500 ASN A 464 53.76 -149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 592 ND1 REMARK 620 2 HIS A 431 NE2 99.4 REMARK 620 3 HIS A 433 NE2 149.4 99.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 440 OD1 REMARK 620 2 MET A 441 O 102.0 REMARK 620 3 ASP A 581 OD1 98.2 131.2 REMARK 620 4 ILE A 582 O 95.2 104.0 118.0 REMARK 620 5 HOH A1234 O 168.8 67.2 91.6 84.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AV4 RELATED DB: PDB REMARK 900 1AV4 IS THE AGAO HOLOENZYME REMARK 900 RELATED ID: 1SIH RELATED DB: PDB REMARK 900 AGAO SIMILARLY COMPLEXED WITH A SIMILAR INHIBITOR DBREF 1SII A 3 638 UNP P46881 PAOX_ARTGO 3 638 SEQADV 1SII SER A 639 UNP P46881 CLONING ARTIFACT SEQADV 1SII ASN A 640 UNP P46881 CLONING ARTIFACT SEQADV 1SII TRP A 641 UNP P46881 CLONING ARTIFACT SEQADV 1SII SER A 642 UNP P46881 CLONING ARTIFACT SEQADV 1SII HIS A 643 UNP P46881 CLONING ARTIFACT SEQADV 1SII PRO A 644 UNP P46881 CLONING ARTIFACT SEQADV 1SII GLN A 645 UNP P46881 CLONING ARTIFACT SEQADV 1SII PHE A 646 UNP P46881 CLONING ARTIFACT SEQADV 1SII GLU A 647 UNP P46881 CLONING ARTIFACT SEQADV 1SII LYS A 648 UNP P46881 CLONING ARTIFACT SEQRES 1 A 646 PRO SER THR ILE GLN THR ALA SER PRO PHE ARG LEU ALA SEQRES 2 A 646 SER ALA GLY GLU ILE SER GLU VAL GLN GLY ILE LEU ARG SEQRES 3 A 646 THR ALA GLY LEU LEU GLY PRO GLU LYS ARG ILE ALA TYR SEQRES 4 A 646 LEU GLY VAL LEU ASP PRO ALA ARG GLY ALA GLY SER GLU SEQRES 5 A 646 ALA GLU ASP ARG ARG PHE ARG VAL PHE ILE HIS ASP VAL SEQRES 6 A 646 SER GLY ALA ARG PRO GLN GLU VAL THR VAL SER VAL THR SEQRES 7 A 646 ASN GLY THR VAL ILE SER ALA VAL GLU LEU ASP THR ALA SEQRES 8 A 646 ALA THR GLY GLU LEU PRO VAL LEU GLU GLU GLU PHE GLU SEQRES 9 A 646 VAL VAL GLU GLN LEU LEU ALA THR ASP GLU ARG TRP LEU SEQRES 10 A 646 LYS ALA LEU ALA ALA ARG ASN LEU ASP VAL SER LYS VAL SEQRES 11 A 646 ARG VAL ALA PRO LEU SER ALA GLY VAL PHE GLU TYR ALA SEQRES 12 A 646 GLU GLU ARG GLY ARG ARG ILE LEU ARG GLY LEU ALA PHE SEQRES 13 A 646 VAL GLN ASP PHE PRO GLU ASP SER ALA TRP ALA HIS PRO SEQRES 14 A 646 VAL ASP GLY LEU VAL ALA TYR VAL ASP VAL VAL SER LYS SEQRES 15 A 646 GLU VAL THR ARG VAL ILE ASP THR GLY VAL PHE PRO VAL SEQRES 16 A 646 PRO ALA GLU HIS GLY ASN TYR THR ASP PRO GLU LEU THR SEQRES 17 A 646 GLY PRO LEU ARG THR THR GLN LYS PRO ILE SER ILE THR SEQRES 18 A 646 GLN PRO GLU GLY PRO SER PHE THR VAL THR GLY GLY ASN SEQRES 19 A 646 HIS ILE GLU TRP GLU LYS TRP SER LEU ASP VAL GLY PHE SEQRES 20 A 646 ASP VAL ARG GLU GLY VAL VAL LEU HIS ASN ILE ALA PHE SEQRES 21 A 646 ARG ASP GLY ASP ARG LEU ARG PRO ILE ILE ASN ARG ALA SEQRES 22 A 646 SER ILE ALA GLU MET VAL VAL PRO TYR GLY ASP PRO SER SEQRES 23 A 646 PRO ILE ARG SER TRP GLN ASN TYR PHE ASP THR GLY GLU SEQRES 24 A 646 TYR LEU VAL GLY GLN TYR ALA ASN SER LEU GLU LEU GLY SEQRES 25 A 646 CYS ASP CYS LEU GLY ASP ILE THR TYR LEU SER PRO VAL SEQRES 26 A 646 ILE SER ASP ALA PHE GLY ASN PRO ARG GLU ILE ARG ASN SEQRES 27 A 646 GLY ILE CYS MET HIS GLU GLU ASP TRP GLY ILE LEU ALA SEQRES 28 A 646 LYS HIS SER ASP LEU TRP SER GLY ILE ASN TYR THR ARG SEQRES 29 A 646 ARG ASN ARG ARG MET VAL ILE SER PHE PHE THR THR ILE SEQRES 30 A 646 GLY ASN NBQ ASP TYR GLY PHE TYR TRP TYR LEU TYR LEU SEQRES 31 A 646 ASP GLY THR ILE GLU PHE GLU ALA LYS ALA THR GLY VAL SEQRES 32 A 646 VAL PHE THR SER ALA PHE PRO GLU GLY GLY SER ASP ASN SEQRES 33 A 646 ILE SER GLN LEU ALA PRO GLY LEU GLY ALA PRO PHE HIS SEQRES 34 A 646 GLN HIS ILE PHE SER ALA ARG LEU ASP MET ALA ILE ASP SEQRES 35 A 646 GLY PHE THR ASN ARG VAL GLU GLU GLU ASP VAL VAL ARG SEQRES 36 A 646 GLN THR MET GLY PRO GLY ASN GLU ARG GLY ASN ALA PHE SEQRES 37 A 646 SER ARG LYS ARG THR VAL LEU THR ARG GLU SER GLU ALA SEQRES 38 A 646 VAL ARG GLU ALA ASP ALA ARG THR GLY ARG THR TRP ILE SEQRES 39 A 646 ILE SER ASN PRO GLU SER LYS ASN ARG LEU ASN GLU PRO SEQRES 40 A 646 VAL GLY TYR LYS LEU HIS ALA HIS ASN GLN PRO THR LEU SEQRES 41 A 646 LEU ALA ASP PRO GLY SER SER ILE ALA ARG ARG ALA ALA SEQRES 42 A 646 PHE ALA THR LYS ASP LEU TRP VAL THR ARG TYR ALA ASP SEQRES 43 A 646 ASP GLU ARG TYR PRO THR GLY ASP PHE VAL ASN GLN HIS SEQRES 44 A 646 SER GLY GLY ALA GLY LEU PRO SER TYR ILE ALA GLN ASP SEQRES 45 A 646 ARG ASP ILE ASP GLY GLN ASP ILE VAL VAL TRP HIS THR SEQRES 46 A 646 PHE GLY LEU THR HIS PHE PRO ARG VAL GLU ASP TRP PRO SEQRES 47 A 646 ILE MET PRO VAL ASP THR VAL GLY PHE LYS LEU ARG PRO SEQRES 48 A 646 GLU GLY PHE PHE ASP ARG SER PRO VAL LEU ASP VAL PRO SEQRES 49 A 646 ALA ASN PRO SER GLN SER GLY SER HIS CYS HIS GLY SER SEQRES 50 A 646 ASN TRP SER HIS PRO GLN PHE GLU LYS MODRES 1SII NBQ A 382 TYR HET NBQ A 382 48 HET CU A 701 1 HET NA A1000 1 HET SO4 A1101 5 HET GOL A1201 11 HET GOL A1202 11 HETNAM NBQ 2-HYDROXY-5-({1-[(2-NAPHTHYLOXY)METHYL]-3-OXOPROP-1- HETNAM 2 NBQ ENYL}AMINO)TYROSINE HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 NBQ C23 H22 N2 O6 FORMUL 2 CU CU 2+ FORMUL 3 NA NA 1+ FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *495(H2 O) HELIX 1 1 SER A 16 ALA A 30 1 15 HELIX 2 2 ASP A 91 GLY A 96 1 6 HELIX 3 3 LEU A 101 PHE A 105 5 5 HELIX 4 4 GLU A 106 ALA A 113 1 8 HELIX 5 5 ASP A 115 ARG A 125 1 11 HELIX 6 6 ASP A 128 SER A 130 5 3 HELIX 7 7 TYR A 144 ARG A 148 5 5 HELIX 8 8 SER A 166 ALA A 169 5 4 HELIX 9 9 ASP A 206 GLY A 211 1 6 HELIX 10 10 ASP A 298 LEU A 303 1 6 HELIX 11 11 VAL A 304 ALA A 308 5 5 HELIX 12 12 ARG A 479 GLU A 482 5 4 HELIX 13 13 ASP A 488 GLY A 492 5 5 HELIX 14 14 SER A 528 ALA A 534 1 7 HELIX 15 15 ALA A 535 LYS A 539 5 5 HELIX 16 16 GLY A 566 ALA A 572 1 7 HELIX 17 17 ARG A 595 TRP A 599 5 5 SHEET 1 A 4 LYS A 37 VAL A 44 0 SHEET 2 A 4 ARG A 59 ASP A 66 -1 O ARG A 61 N GLY A 43 SHEET 3 A 4 GLN A 73 SER A 78 -1 O VAL A 75 N VAL A 62 SHEET 4 A 4 THR A 83 GLU A 89 -1 O THR A 83 N SER A 78 SHEET 1 B 4 VAL A 132 SER A 138 0 SHEET 2 B 4 ILE A 152 VAL A 159 -1 O ARG A 154 N LEU A 137 SHEET 3 B 4 PRO A 171 ASP A 180 -1 O ALA A 177 N GLY A 155 SHEET 4 B 4 GLU A 185 ASP A 191 -1 O ILE A 190 N VAL A 176 SHEET 1 C 6 THR A 231 THR A 233 0 SHEET 2 C 6 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 C 6 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 C 6 GLY A 254 ASP A 264 -1 O VAL A 256 N GLY A 248 SHEET 5 C 6 ARG A 267 PRO A 283 -1 O ILE A 271 N ILE A 260 SHEET 6 C 6 ASN A 295 PHE A 297 -1 O TYR A 296 N VAL A 282 SHEET 1 D 9 THR A 231 THR A 233 0 SHEET 2 D 9 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 D 9 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 D 9 GLY A 254 ASP A 264 -1 O VAL A 256 N GLY A 248 SHEET 5 D 9 ARG A 267 PRO A 283 -1 O ILE A 271 N ILE A 260 SHEET 6 D 9 HIS A 431 MET A 441 -1 O ILE A 434 N VAL A 281 SHEET 7 D 9 ILE A 582 HIS A 592 -1 O VAL A 584 N LEU A 439 SHEET 8 D 9 LEU A 541 ARG A 545 -1 N TRP A 542 O TRP A 585 SHEET 9 D 9 VAL A 484 ARG A 485 -1 N ARG A 485 O LEU A 541 SHEET 1 E10 THR A 322 LEU A 324 0 SHEET 2 E10 ILE A 342 SER A 356 -1 O MET A 344 N THR A 322 SHEET 3 E10 ASN A 363 ILE A 379 -1 O VAL A 372 N HIS A 345 SHEET 4 E10 NBQ A 382 TYR A 391 -1 O TYR A 384 N THR A 377 SHEET 5 E10 ILE A 396 GLY A 404 -1 O THR A 403 N ASP A 383 SHEET 6 E10 MET A 602 GLU A 614 -1 O ASP A 605 N ALA A 402 SHEET 7 E10 PRO A 509 ALA A 516 -1 N LYS A 513 O ARG A 612 SHEET 8 E10 THR A 494 LYS A 503 -1 N TRP A 495 O LEU A 514 SHEET 9 E10 ARG A 449 ARG A 457 -1 N GLU A 453 O THR A 494 SHEET 10 E10 PHE A 470 VAL A 476 -1 O SER A 471 N VAL A 456 SHEET 1 F 2 VAL A 327 SER A 329 0 SHEET 2 F 2 PRO A 335 GLU A 337 -1 O ARG A 336 N ILE A 328 SHEET 1 G 3 SER A 409 ALA A 410 0 SHEET 2 G 3 LEU A 426 PRO A 429 -1 O GLY A 427 N SER A 409 SHEET 3 G 3 ILE A 419 ALA A 423 -1 N LEU A 422 O LEU A 426 SSBOND 1 CYS A 317 CYS A 343 1555 1555 2.03 LINK CU CU A 701 ND1 HIS A 592 1555 1555 2.06 LINK CU CU A 701 NE2 HIS A 431 1555 1555 2.01 LINK CU CU A 701 NE2 HIS A 433 1555 1555 2.06 LINK C ASN A 381 N NBQ A 382 1555 1555 1.33 LINK C NBQ A 382 N ASP A 383 1555 1555 1.33 LINK OD1 ASP A 440 NA NA A1000 1555 1555 2.47 LINK O MET A 441 NA NA A1000 1555 1555 2.40 LINK OD1 ASP A 581 NA NA A1000 1555 1555 2.52 LINK O ILE A 582 NA NA A1000 1555 1555 2.56 LINK NA NA A1000 O HOH A1234 1555 1555 2.81 CISPEP 1 TRP A 599 PRO A 600 0 1.63 SITE 1 AC1 4 HIS A 431 HIS A 433 HIS A 592 HOH A1534 SITE 1 AC2 5 ASP A 440 MET A 441 ASP A 581 ILE A 582 SITE 2 AC2 5 HOH A1234 SITE 1 AC3 10 ASP A 316 CYS A 317 LEU A 318 HIS A 345 SITE 2 AC3 10 GLY A 350 ARG A 367 HOH A1251 HOH A1365 SITE 3 AC3 10 HOH A1368 HOH A1668 SITE 1 AC4 10 ARG A 532 ARG A 533 THR A 554 PHE A 557 SITE 2 AC4 10 HIS A 561 SER A 562 GLY A 563 GLY A 564 SITE 3 AC4 10 ALA A 565 HOH A1224 SITE 1 AC5 7 ASN A 126 ASP A 161 VAL A 197 PRO A 198 SITE 2 AC5 7 ALA A 199 HOH A1634 HOH A1681 CRYST1 158.060 62.619 91.990 90.00 112.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006327 0.000000 0.002570 0.00000 SCALE2 0.000000 0.015970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011734 0.00000