PDB Short entry for 1SJQ HEADER RNA BINDING PROTEIN 04-MAR-04 1SJQ TITLE NMR STRUCTURE OF RRM1 FROM HUMAN POLYPYRIMIDINE TRACT BINDING PROTEIN TITLE 2 ISOFORM 1 (PTB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM1, RESIDUES 54-147; COMPND 5 SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, HNRNP I, 57 COMPND 6 KDA RNA-BINDING PROTEIN PPTB-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTBP1, PTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009 (QIAGEN); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE9 KEYWDS BABBAB MOTIF, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK,M.R.CONTE, AUTHOR 2 C.M.READ,P.D.CARY,D.I.SVERGUN,P.V.KONAREV,M.V.PETOUKHOV,S.CURRY, AUTHOR 3 S.J.MATTHEWS REVDAT 3 02-MAR-22 1SJQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SJQ 1 VERSN REVDAT 1 14-SEP-04 1SJQ 0 JRNL AUTH P.J.SIMPSON,T.P.MONIE,A.SZENDROI,N.DAVYDOVA,J.K.TYZACK, JRNL AUTH 2 M.R.CONTE,C.M.READ,P.D.CARY,D.I.SVERGUN,P.V.KONAREV,S.CURRY, JRNL AUTH 3 S.J.MATTHEWS JRNL TITL STRUCTURE AND RNA INTERACTIONS OF THE N-TERMINAL RRM DOMAINS JRNL TITL 2 OF PTB JRNL REF STRUCTURE V. 12 1631 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15341728 JRNL DOI 10.1016/J.STR.2004.07.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, A.T (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021769. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.3 M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PTB1-1 U-15N,13C, 50 MM NA REMARK 210 PHOSPHATE BUFFER, 100 MM NACL, 2 REMARK 210 MM NAN3,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, AURELIA 2.8.11, REMARK 210 NMRPIPE 1, NMRVIEW 4.1.3, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : HYBRID DISTANCE REMARK 210 GEOMETRY/SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 100 REMARK 465 ASN A 101 REMARK 465 GLN A 102 REMARK 465 ALA A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 44 O GLU A 58 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 15 86.12 -52.04 REMARK 500 1 ILE A 26 110.60 -27.22 REMARK 500 1 ASP A 27 -18.74 146.07 REMARK 500 1 VAL A 28 -167.78 -52.41 REMARK 500 1 ASN A 45 152.31 170.98 REMARK 500 1 LYS A 52 55.88 -107.90 REMARK 500 1 SER A 74 -57.19 -122.25 REMARK 500 1 ARG A 80 23.37 46.58 REMARK 500 1 LYS A 92 -88.63 -38.54 REMARK 500 1 ASP A 97 -91.04 40.77 REMARK 500 1 SER A 98 37.28 -157.83 REMARK 500 2 PRO A 15 -86.03 -65.79 REMARK 500 2 PRO A 25 78.32 -53.32 REMARK 500 2 ILE A 26 118.33 -34.62 REMARK 500 2 ASP A 27 -19.55 149.76 REMARK 500 2 VAL A 28 -155.38 -55.44 REMARK 500 2 ASN A 45 151.72 176.40 REMARK 500 2 ASN A 53 78.73 36.35 REMARK 500 2 ASN A 66 -70.01 -51.82 REMARK 500 2 ARG A 80 16.67 56.88 REMARK 500 2 ASN A 90 31.32 -94.47 REMARK 500 3 VAL A 14 112.07 51.57 REMARK 500 3 PRO A 15 -86.13 -65.35 REMARK 500 3 SER A 16 172.51 167.08 REMARK 500 3 LYS A 23 90.82 43.77 REMARK 500 3 LEU A 24 115.42 -167.66 REMARK 500 3 PRO A 25 73.43 -59.08 REMARK 500 3 ILE A 26 153.42 -30.01 REMARK 500 3 ASP A 27 9.43 87.46 REMARK 500 3 VAL A 28 -149.93 -57.86 REMARK 500 3 ASN A 45 146.95 -176.88 REMARK 500 3 ASN A 53 86.47 68.81 REMARK 500 3 THR A 73 -31.76 -35.54 REMARK 500 3 ARG A 80 -59.51 67.27 REMARK 500 3 ASN A 90 34.35 -96.38 REMARK 500 3 LYS A 92 -72.34 -66.54 REMARK 500 4 ARG A 17 -53.30 -179.53 REMARK 500 4 PRO A 25 80.15 -60.49 REMARK 500 4 ILE A 26 154.61 -32.18 REMARK 500 4 VAL A 28 -165.54 -54.81 REMARK 500 4 ASN A 45 158.47 170.69 REMARK 500 4 LYS A 50 -168.39 -74.30 REMARK 500 4 ASN A 53 77.93 159.97 REMARK 500 4 ARG A 80 -62.12 62.24 REMARK 500 4 PRO A 83 106.01 -55.30 REMARK 500 4 PHE A 88 -173.66 -65.48 REMARK 500 4 HIS A 91 45.11 159.37 REMARK 500 4 ASP A 97 111.60 57.15 REMARK 500 5 SER A 16 63.64 36.17 REMARK 500 5 LYS A 23 31.66 39.32 REMARK 500 REMARK 500 THIS ENTRY HAS 199 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SJR RELATED DB: PDB REMARK 900 NMR STRUCTURE OF RRM2 FROM HUMAN POLYPYRIMIDINE TRACT BINDING REMARK 900 PROTEIN ISOFORM 1 (PTB1) DBREF 1SJQ A 12 105 UNP P26599 PTBP1_HUMAN 54 147 SEQADV 1SJQ MET A 1 UNP P26599 INITIATING METHIONINE SEQADV 1SJQ ARG A 2 UNP P26599 EXPRESSION TAG SEQADV 1SJQ GLY A 3 UNP P26599 EXPRESSION TAG SEQADV 1SJQ SER A 4 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 5 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 6 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 7 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 8 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 9 UNP P26599 EXPRESSION TAG SEQADV 1SJQ HIS A 10 UNP P26599 EXPRESSION TAG SEQADV 1SJQ GLY A 11 UNP P26599 EXPRESSION TAG SEQADV 1SJQ SER A 12 UNP P26599 ALA 54 CLONING ARTIFACT SEQRES 1 A 105 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 A 105 VAL PRO SER ARG VAL ILE HIS ILE ARG LYS LEU PRO ILE SEQRES 3 A 105 ASP VAL THR GLU GLY GLU VAL ILE SER LEU GLY LEU PRO SEQRES 4 A 105 PHE GLY LYS VAL THR ASN LEU LEU MET LEU LYS GLY LYS SEQRES 5 A 105 ASN GLN ALA PHE ILE GLU MET ASN THR GLU GLU ALA ALA SEQRES 6 A 105 ASN THR MET VAL ASN TYR TYR THR SER VAL THR PRO VAL SEQRES 7 A 105 LEU ARG GLY GLN PRO ILE TYR ILE GLN PHE SER ASN HIS SEQRES 8 A 105 LYS GLU LEU LYS THR ASP SER SER PRO ASN GLN ALA ARG SEQRES 9 A 105 ALA HELIX 1 1 THR A 29 GLY A 41 1 13 HELIX 2 2 THR A 61 THR A 73 1 13 SHEET 1 A 3 VAL A 18 ILE A 21 0 SHEET 2 A 3 GLN A 54 MET A 59 -1 O ILE A 57 N ILE A 19 SHEET 3 A 3 VAL A 43 LEU A 49 -1 N THR A 44 O GLU A 58 SHEET 1 B 2 VAL A 78 LEU A 79 0 SHEET 2 B 2 GLN A 82 PRO A 83 -1 O GLN A 82 N LEU A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000