PDB Short entry for 1SLJ
HEADER    HYDROLASE                               05-MAR-04   1SLJ              
TITLE     SOLUTION STRUCTURE OF THE S1 DOMAIN OF RNASE E FROM E. COLI           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RIBONUCLEASE E;                                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: S1 DOMAIN;                                                 
COMPND   5 SYNONYM: RNASE E;                                                    
COMPND   6 EC: 3.1.4.-;                                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 562;                                                 
SOURCE   4 GENE: RNE, AMS, HMP1, B1084;                                         
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET15B                                    
KEYWDS    OB-FOLD, RNA-BINDING, HYDROLASE                                       
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    M.SCHUBERT,R.E.EDGE,P.LARIO,M.A.COOK,N.C.J.STRYNADKA,G.A.MACKIE,      
AUTHOR   2 L.P.MCINTOSH                                                         
REVDAT   3   02-MAR-22 1SLJ    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1SLJ    1       VERSN                                    
REVDAT   1   17-AUG-04 1SLJ    0                                                
JRNL        AUTH   M.SCHUBERT,R.E.EDGE,P.LARIO,M.A.COOK,N.C.STRYNADKA,          
JRNL        AUTH 2 G.A.MACKIE,L.P.MCINTOSH                                      
JRNL        TITL   STRUCTURAL CHARACTERIZATION OF THE RNASE E S1 DOMAIN AND     
JRNL        TITL 2 IDENTIFICATION OF ITS OLIGONUCLEOTIDE-BINDING AND            
JRNL        TITL 3 DIMERIZATION INTERFACES.                                     
JRNL        REF    J.MOL.BIOL.                   V. 341    37 2004              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   15312761                                                     
JRNL        DOI    10.1016/J.JMB.2004.05.061                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, ARIA/CNS                                    
REMARK   3   AUTHORS     : DELAGLIO (NMRPIPE), LINGE (ARIA/CNS)                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE STRUCTURES ARE BASED ON A TOTAL OF 2884 RESTRAINTS, INCLUDING   
REMARK   3  2113 UNAMBIGUOUS AND 597 AMBIGUOUS NOE-DERIVED                      
REMARK   3  DISTANCE CONSTRAINTS, 159 DIHEDRAL ANGLE RESTRAINTS, 15 DISTANCE    
REMARK   3  RESTRAINTS                                                          
REMARK   3  FROM HYDROGEN BONDS.                                                
REMARK   4                                                                      
REMARK   4 1SLJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000021813.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 75MM                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.5MM RNASE E S1 U-15N,13C; 20MM   
REMARK 210                                   PHOSPHATE BUFFER; 50MM NACL; 92%   
REMARK 210                                   H2O, 8% D2O                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY; 3D_13C_15N/13C-  
REMARK 210                                   SEPARATED_NOESY; 3D_13C-           
REMARK 210                                   SEPARATED_NOESY_AROMATIC           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 500 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA; UNITY                       
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY                             
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4                   
REMARK 210                                                                      
REMARK 210 REMARK: A MIXING TIME OF 100MS WAS USED.                             
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HB2  GLU A    76     H    ALA A   123              1.13            
REMARK 500  HG21  ILE A    46    HD13  ILE A    49              1.27            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  5 TYR A  77   CE1   TYR A  77   CZ     -0.085                       
REMARK 500  5 TYR A  77   CZ    TYR A  77   CE2     0.110                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 HIS A  32       68.35   -154.54                                   
REMARK 500  1 LEU A  34     -105.16     61.81                                   
REMARK 500  1 GLU A  35     -174.40   -173.16                                   
REMARK 500  1 HIS A  65      141.50     63.84                                   
REMARK 500  1 PRO A  79      141.76    -39.13                                   
REMARK 500  1 ARG A 109       12.13   -144.10                                   
REMARK 500  1 ASN A 111      -31.04   -130.50                                   
REMARK 500  1 PHE A 119       46.93    -81.07                                   
REMARK 500  1 ALA A 123       80.43     72.29                                   
REMARK 500  2 HIS A  32      -17.70     69.85                                   
REMARK 500  2 GLN A  36      -58.00     69.65                                   
REMARK 500  2 LYS A  37      -17.92   -142.89                                   
REMARK 500  2 ASN A  40      109.52    -50.66                                   
REMARK 500  2 GLU A  54       58.01     39.87                                   
REMARK 500  2 HIS A  65      146.77     68.59                                   
REMARK 500  2 PRO A  79      135.45    -37.97                                   
REMARK 500  2 ALA A  80       -7.19    -56.51                                   
REMARK 500  2 VAL A  93      -51.91   -120.30                                   
REMARK 500  2 GLU A 108       90.87    -66.85                                   
REMARK 500  2 PHE A 119       47.06    -78.40                                   
REMARK 500  2 ALA A 123     -173.89    158.34                                   
REMARK 500  3 SER A  31      -74.33    -50.54                                   
REMARK 500  3 LEU A  34      -94.84    -79.38                                   
REMARK 500  3 GLU A  35       16.89   -143.94                                   
REMARK 500  3 ASN A  40       91.57    -66.28                                   
REMARK 500  3 HIS A  65     -159.77     61.28                                   
REMARK 500  3 ALA A  80      -16.98    -48.99                                   
REMARK 500  3 VAL A  93      -54.86   -121.94                                   
REMARK 500  3 ARG A 109       18.91   -143.98                                   
REMARK 500  3 SER A 121       19.75    -66.85                                   
REMARK 500  3 ALA A 123       61.54    158.44                                   
REMARK 500  4 HIS A  65      144.37     70.34                                   
REMARK 500  4 PRO A  79      137.12    -26.72                                   
REMARK 500  4 ARG A 109      -82.71   -105.53                                   
REMARK 500  4 PHE A 119       44.45    -78.15                                   
REMARK 500  4 ALA A 123       56.21     76.94                                   
REMARK 500  5 HIS A  32       52.24    -99.26                                   
REMARK 500  5 GLN A  36       74.02     65.35                                   
REMARK 500  5 HIS A  65      143.28     71.25                                   
REMARK 500  5 PRO A  79      143.65    -39.08                                   
REMARK 500  5 ALA A  80       -7.35    -58.95                                   
REMARK 500  5 PHE A 119       45.03    -80.25                                   
REMARK 500  5 SER A 121       33.48    -85.03                                   
REMARK 500  5 ALA A 123       37.67   -161.66                                   
REMARK 500  6 HIS A  32       47.72   -152.02                                   
REMARK 500  6 LEU A  34      -74.38   -128.48                                   
REMARK 500  6 GLU A  54       60.23     39.23                                   
REMARK 500  6 PRO A  79      138.02    -38.65                                   
REMARK 500  6 VAL A  93      -54.77   -122.50                                   
REMARK 500  6 ARG A 109       49.28   -146.65                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      83 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  5 TYR A  77         0.08    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1SMX   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE S1 DOMAIN OF RNASE E FROM E. COLI (NATIVE)  
REMARK 900 RELATED ID: 1SN8   RELATED DB: PDB                                   
DBREF  1SLJ A   35   125  UNP    P21513   RNE_ECOLI       35    125             
SEQADV 1SLJ GLY A   30  UNP  P21513              CLONING ARTIFACT               
SEQADV 1SLJ SER A   31  UNP  P21513              CLONING ARTIFACT               
SEQADV 1SLJ HIS A   32  UNP  P21513              CLONING ARTIFACT               
SEQADV 1SLJ MET A   33  UNP  P21513              CLONING ARTIFACT               
SEQADV 1SLJ LEU A   34  UNP  P21513              CLONING ARTIFACT               
SEQRES   1 A   96  GLY SER HIS MET LEU GLU GLN LYS LYS ALA ASN ILE TYR          
SEQRES   2 A   96  LYS GLY LYS ILE THR ARG ILE GLU PRO SER LEU GLU ALA          
SEQRES   3 A   96  ALA PHE VAL ASP TYR GLY ALA GLU ARG HIS GLY PHE LEU          
SEQRES   4 A   96  PRO LEU LYS GLU ILE ALA ARG GLU TYR PHE PRO ALA ASN          
SEQRES   5 A   96  TYR SER ALA HIS GLY ARG PRO ASN ILE LYS ASP VAL LEU          
SEQRES   6 A   96  ARG GLU GLY GLN GLU VAL ILE VAL GLN ILE ASP LYS GLU          
SEQRES   7 A   96  GLU ARG GLY ASN LYS GLY ALA ALA LEU THR THR PHE ILE          
SEQRES   8 A   96  SER LEU ALA GLY SER                                          
HELIX    1   1 LYS A   71  ILE A   73  5                                   3    
HELIX    2   2 ASN A   89  VAL A   93  5                                   5    
SHEET    1   A 6 GLU A  99  VAL A 102  0                                        
SHEET    2   A 6 TYR A  42  ILE A  49 -1  N  TYR A  42   O  VAL A 102           
SHEET    3   A 6 ALA A  55  ASP A  59 -1  O  PHE A  57   N  THR A  47           
SHEET    4   A 6 GLY A  66  PRO A  69 -1  O  LEU A  68   N  ALA A  56           
SHEET    5   A 6 ALA A 114  LEU A 116  1  O  ALA A 114   N  PHE A  67           
SHEET    6   A 6 ILE A 104  LYS A 106 -1  N  LYS A 106   O  ALA A 115           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000