PDB Short entry for 1SOZ HEADER HYDROLASE 16-MAR-04 1SOZ TITLE CRYSTAL STRUCTURE OF DEGS PROTEASE IN COMPLEX WITH AN ACTIVATING TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE DEGS; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.4.21.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIVATING PEPTIDE; COMPND 8 CHAIN: D, E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DEGS, HHOB, HTRH, B3235, Z4594, ECS4108; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS STRESS RESPONSE, PROTEIN QUALITY CONTROL, PDZ, UPR, HTRA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.WILKEN,K.KITZING,R.KURZBAUER,M.EHRMANN,T.CLAUSEN REVDAT 4 03-APR-24 1SOZ 1 REMARK REVDAT 3 14-FEB-24 1SOZ 1 SEQADV REVDAT 2 24-FEB-09 1SOZ 1 VERSN REVDAT 1 08-JUN-04 1SOZ 0 JRNL AUTH C.WILKEN,K.KITZING,R.KURZBAUER,M.EHRMANN,T.CLAUSEN JRNL TITL CRYSTAL STRUCTURE OF THE DEGS STRESS SENSOR: HOW A PDZ JRNL TITL 2 DOMAIN RECOGNIZES MISFOLDED PROTEIN AND ACTIVATES A PROTEASE JRNL REF CELL(CAMBRIDGE,MASS.) V. 117 483 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15137941 JRNL DOI 10.1016/S0092-8674(04)00454-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.P.WALSH,B.M.ALBA,B.BOSE,C.A.GROSS,R.T.SAUER REMARK 1 TITL OMP PEPTIDE SIGNALS INITIATE THE ENVELOPE-STRESS RESPONSE BY REMARK 1 TITL 2 ACTIVATING DEGS PROTEASE VIA RELIEF OF INHIBITION MEDIATED REMARK 1 TITL 3 BY ITS PDZ DOMAIN REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 113 61 2003 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(03)00203-4 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.660 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: DEGS, UNCOMPLEXED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MPD, HEPES, MAGNESIUM REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.99200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.99200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 265 REMARK 465 ILE A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 HIS A 270 REMARK 465 ALA A 271 REMARK 465 GLN A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 ILE A 276 REMARK 465 ASP A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 GLN A 280 REMARK 465 GLY A 281 REMARK 465 ILE A 313 REMARK 465 SER A 314 REMARK 465 ALA A 315 REMARK 465 LEU A 316 REMARK 465 GLU A 317 REMARK 465 MET A 336 REMARK 465 ARG A 337 REMARK 465 ASP A 338 REMARK 465 ASP A 339 REMARK 465 LYS A 340 REMARK 465 GLN A 341 REMARK 465 LEU A 342 REMARK 465 THR A 343 REMARK 465 ALA A 353 REMARK 465 THR A 354 REMARK 465 ASN A 355 REMARK 465 GLU B 265 REMARK 465 ILE B 266 REMARK 465 ALA B 267 REMARK 465 PRO B 268 REMARK 465 LEU B 269 REMARK 465 HIS B 270 REMARK 465 ALA B 271 REMARK 465 GLN B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 GLY B 275 REMARK 465 ILE B 276 REMARK 465 ASP B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 GLN B 280 REMARK 465 GLY B 281 REMARK 465 VAL B 287 REMARK 465 SER B 288 REMARK 465 PRO B 289 REMARK 465 ASP B 290 REMARK 465 VAL B 334 REMARK 465 VAL B 335 REMARK 465 MET B 336 REMARK 465 ARG B 337 REMARK 465 ASP B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 GLN B 341 REMARK 465 LEU B 342 REMARK 465 THR B 343 REMARK 465 THR B 354 REMARK 465 ASN B 355 REMARK 465 TYR C 258 REMARK 465 ILE C 259 REMARK 465 GLY C 260 REMARK 465 ILE C 261 REMARK 465 GLY C 262 REMARK 465 GLY C 263 REMARK 465 ARG C 264 REMARK 465 GLU C 265 REMARK 465 ILE C 266 REMARK 465 ALA C 267 REMARK 465 PRO C 268 REMARK 465 LEU C 269 REMARK 465 HIS C 270 REMARK 465 ALA C 271 REMARK 465 GLN C 272 REMARK 465 GLY C 273 REMARK 465 GLY C 274 REMARK 465 GLY C 275 REMARK 465 ILE C 276 REMARK 465 ASP C 277 REMARK 465 GLN C 278 REMARK 465 LEU C 279 REMARK 465 GLN C 280 REMARK 465 GLU C 286 REMARK 465 VAL C 287 REMARK 465 SER C 288 REMARK 465 PRO C 289 REMARK 465 ASP C 290 REMARK 465 GLY C 291 REMARK 465 PRO C 292 REMARK 465 ALA C 293 REMARK 465 ALA C 294 REMARK 465 ASN C 295 REMARK 465 ALA C 296 REMARK 465 GLY C 297 REMARK 465 ILE C 298 REMARK 465 GLN C 299 REMARK 465 VAL C 300 REMARK 465 ASN C 301 REMARK 465 ILE C 313 REMARK 465 SER C 314 REMARK 465 ALA C 315 REMARK 465 LEU C 316 REMARK 465 GLU C 317 REMARK 465 VAL C 333 REMARK 465 VAL C 334 REMARK 465 VAL C 335 REMARK 465 MET C 336 REMARK 465 ARG C 337 REMARK 465 ASP C 338 REMARK 465 ASP C 339 REMARK 465 LYS C 340 REMARK 465 GLN C 341 REMARK 465 LEU C 342 REMARK 465 THR C 343 REMARK 465 THR C 354 REMARK 465 ASN C 355 REMARK 465 ASP D 401 REMARK 465 ASN D 402 REMARK 465 ARG D 403 REMARK 465 LEU D 404 REMARK 465 GLY D 405 REMARK 465 LEU D 406 REMARK 465 ASP E 401 REMARK 465 ASN E 402 REMARK 465 ARG E 403 REMARK 465 LEU E 404 REMARK 465 GLY E 405 REMARK 465 LEU E 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 VAL A 287 CG1 CG2 REMARK 470 SER A 288 OG REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 ILE A 298 CG1 CG2 CD1 REMARK 470 GLN A 299 CG CD OE1 NE2 REMARK 470 ASN A 301 CG OD1 ND2 REMARK 470 LEU A 303 CG CD1 CD2 REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 VAL A 330 CG1 CG2 REMARK 470 VAL A 335 CG1 CG2 REMARK 470 LEU A 344 CG CD1 CD2 REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 GLN A 349 CG CD OE1 NE2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 THR B 68 OG1 CG2 REMARK 470 ASN B 69 CG OD1 ND2 REMARK 470 SER B 70 OG REMARK 470 HIS B 71 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 72 CG OD1 ND2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 282 CG1 CG2 CD1 REMARK 470 VAL B 283 CG1 CG2 REMARK 470 VAL B 284 CG1 CG2 REMARK 470 ILE B 298 CG1 CG2 CD1 REMARK 470 GLN B 299 CG CD OE1 NE2 REMARK 470 LEU B 303 CG CD1 CD2 REMARK 470 LEU B 344 CG CD1 CD2 REMARK 470 GLN B 345 CG CD OE1 NE2 REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 ARG C 186 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 187 CG CD OE1 NE2 REMARK 470 ILE C 282 CG1 CG2 CD1 REMARK 470 VAL C 283 CG1 CG2 REMARK 470 LEU C 303 CG CD1 CD2 REMARK 470 ILE C 304 CG1 CG2 CD1 REMARK 470 ILE C 305 CG1 CG2 CD1 REMARK 470 SER C 306 OG REMARK 470 ILE C 331 CG1 CG2 CD1 REMARK 470 LEU C 344 CG CD1 CD2 REMARK 470 ILE C 348 CG1 CG2 CD1 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LEU A 205 REMARK 475 LEU B 205 REMARK 475 LEU C 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 53.38 -117.74 REMARK 500 ALA A 145 -9.72 -54.23 REMARK 500 ASN A 160 57.46 -116.63 REMARK 500 TYR A 162 20.88 48.34 REMARK 500 ILE A 179 120.45 100.38 REMARK 500 ASN A 182 63.00 -115.92 REMARK 500 THR A 184 -65.77 -156.84 REMARK 500 GLN A 187 109.64 -166.60 REMARK 500 LEU A 218 148.20 168.00 REMARK 500 PHE A 220 107.43 -41.60 REMARK 500 LYS A 222 172.88 59.63 REMARK 500 ASN A 224 -132.83 -150.07 REMARK 500 GLU A 227 157.20 176.89 REMARK 500 ARG A 256 -157.55 -112.26 REMARK 500 ASN A 285 -142.44 -89.07 REMARK 500 ALA A 296 -25.79 -156.99 REMARK 500 VAL A 300 -16.95 -150.59 REMARK 500 ASN A 301 66.50 -173.51 REMARK 500 ILE A 305 -83.74 -70.04 REMARK 500 PRO A 311 124.06 -39.02 REMARK 500 ARG A 326 95.53 76.97 REMARK 500 SER A 329 111.25 -163.77 REMARK 500 GLN A 345 74.94 -112.22 REMARK 500 TYR A 351 154.47 -49.69 REMARK 500 ASN B 67 81.70 5.60 REMARK 500 SER B 70 -44.18 -173.30 REMARK 500 GLN B 73 132.68 -173.86 REMARK 500 ASN B 160 71.28 -117.93 REMARK 500 TYR B 162 23.33 48.67 REMARK 500 ILE B 179 65.60 82.42 REMARK 500 ASN B 182 50.58 -170.25 REMARK 500 THR B 184 -79.89 -121.78 REMARK 500 ARG B 186 152.62 -43.96 REMARK 500 THR B 217 -137.43 -112.74 REMARK 500 LYS B 222 79.45 32.60 REMARK 500 SER B 223 -79.73 -35.39 REMARK 500 ASN B 224 -86.89 -129.87 REMARK 500 ILE B 261 79.12 -165.53 REMARK 500 ALA B 296 70.26 -163.32 REMARK 500 GLN B 299 -144.71 -95.33 REMARK 500 VAL B 300 -82.75 -109.62 REMARK 500 ASN B 301 52.87 -101.83 REMARK 500 ILE B 304 95.83 -161.80 REMARK 500 ALA B 312 53.46 -107.72 REMARK 500 ILE B 313 -77.22 30.33 REMARK 500 SER B 314 -147.60 -83.88 REMARK 500 THR C 68 49.95 -107.09 REMARK 500 SER C 70 -50.82 167.57 REMARK 500 HIS C 71 20.31 173.23 REMARK 500 ASN C 72 108.96 -59.69 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SOT RELATED DB: PDB REMARK 900 DEGS PROTEASE, INACTIVE PROTEOLYTIC SITE REMARK 900 RELATED ID: 1VCW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DEGS AFTER BACKSOAKING THE ACTIVATING PEPTIDE DBREF 1SOZ A 43 355 UNP P31137 DEGS_ECOLI 43 355 DBREF 1SOZ B 43 355 UNP P31137 DEGS_ECOLI 43 355 DBREF 1SOZ C 43 355 UNP P31137 DEGS_ECOLI 43 355 DBREF 1SOZ D 401 410 PDB 1SOZ 1SOZ 401 410 DBREF 1SOZ E 401 410 PDB 1SOZ 1SOZ 401 410 SEQADV 1SOZ MET A 42 UNP P31137 INITIATING METHIONINE SEQADV 1SOZ MET B 42 UNP P31137 INITIATING METHIONINE SEQADV 1SOZ MET C 42 UNP P31137 INITIATING METHIONINE SEQRES 1 A 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 A 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 A 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 A 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 A 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 A 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 A 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 A 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 A 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 A 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 A 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 A 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 A 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 A 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 A 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 A 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 A 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 A 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 A 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 A 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 A 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 A 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 A 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 A 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 A 314 THR ASN SEQRES 1 B 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 B 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 B 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 B 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 B 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 B 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 B 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 B 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 B 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 B 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 B 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 B 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 B 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 B 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 B 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 B 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 B 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 B 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 B 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 B 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 B 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 B 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 B 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 B 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 B 314 THR ASN SEQRES 1 C 314 MET THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 2 C 314 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 3 C 314 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 4 C 314 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 5 C 314 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 6 C 314 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 7 C 314 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 8 C 314 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 9 C 314 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 10 C 314 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 11 C 314 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 12 C 314 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 13 C 314 HIS GLY ASN SER GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 14 C 314 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 15 C 314 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 16 C 314 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 17 C 314 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 18 C 314 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 19 C 314 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 20 C 314 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 21 C 314 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 22 C 314 ALA LEU GLU THR MET ASP GLN VAL ALA GLU ILE ARG PRO SEQRES 23 C 314 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 24 C 314 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 25 C 314 THR ASN SEQRES 1 D 10 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE SEQRES 1 E 10 ASP ASN ARG LEU GLY LEU VAL TYR GLN PHE FORMUL 6 HOH *224(H2 O) HELIX 1 1 TYR A 47 ALA A 55 1 9 HELIX 2 2 LYS A 95 ASN A 99 1 5 HELIX 3 3 ASN A 160 LEU A 164 5 5 HELIX 4 4 PHE A 238 GLY A 252 1 15 HELIX 5 5 THR A 318 ILE A 325 1 8 HELIX 6 6 TYR B 47 ALA B 55 1 9 HELIX 7 7 LYS B 95 ASN B 99 1 5 HELIX 8 8 ASN B 160 LEU B 164 5 5 HELIX 9 9 PHE B 238 GLY B 252 1 15 HELIX 10 10 ALA B 293 GLY B 297 5 5 HELIX 11 11 ALA B 315 GLU B 324 1 10 HELIX 12 12 TYR C 47 ALA C 55 1 9 HELIX 13 13 HIS C 96 ILE C 98 5 3 HELIX 14 14 ASN C 160 LEU C 164 5 5 HELIX 15 15 PHE C 238 GLY C 252 1 15 HELIX 16 16 ASP C 320 ILE C 325 5 6 SHEET 1 A 7 VAL A 58 GLY A 65 0 SHEET 2 A 7 GLU A 75 ILE A 84 -1 O THR A 78 N ASN A 63 SHEET 3 A 7 TYR A 90 ASN A 94 -1 O ILE A 92 N VAL A 83 SHEET 4 A 7 LEU A 127 LYS A 131 -1 O ALA A 128 N THR A 93 SHEET 5 A 7 VAL A 113 ASP A 122 -1 N VAL A 119 O VAL A 129 SHEET 6 A 7 GLN A 103 ALA A 107 -1 N VAL A 106 O PHE A 114 SHEET 7 A 7 VAL A 58 GLY A 65 -1 N ARG A 64 O GLN A 103 SHEET 1 B 7 VAL A 154 GLY A 159 0 SHEET 2 B 7 THR A 167 ARG A 178 -1 O THR A 167 N GLY A 159 SHEET 3 B 7 PHE A 189 THR A 192 -1 O GLN A 191 N SER A 174 SHEET 4 B 7 GLY A 233 PRO A 237 -1 O GLY A 233 N THR A 192 SHEET 5 B 7 LEU A 212 SER A 219 -1 N THR A 217 O PHE A 234 SHEET 6 B 7 ALA A 204 VAL A 206 -1 N LEU A 205 O GLY A 214 SHEET 7 B 7 VAL A 154 GLY A 159 -1 N ILE A 158 O ALA A 204 SHEET 1 C 2 GLY A 262 GLY A 263 0 SHEET 2 C 2 TYR D 408 GLN D 409 -1 O TYR D 408 N GLY A 263 SHEET 1 D 2 VAL A 330 PRO A 332 0 SHEET 2 D 2 GLN A 345 THR A 347 -1 O VAL A 346 N ILE A 331 SHEET 1 E 7 VAL B 58 GLY B 65 0 SHEET 2 E 7 GLU B 75 ASP B 86 -1 O GLU B 75 N GLY B 65 SHEET 3 E 7 TYR B 90 ASN B 94 -1 O ILE B 92 N VAL B 83 SHEET 4 E 7 LEU B 127 LYS B 131 -1 O LEU B 130 N ILE B 91 SHEET 5 E 7 VAL B 113 ASP B 122 -1 N ASP B 122 O LEU B 127 SHEET 6 E 7 GLN B 103 ALA B 107 -1 N ILE B 104 O ALA B 116 SHEET 7 E 7 VAL B 58 GLY B 65 -1 N TYR B 62 O ILE B 105 SHEET 1 F 7 VAL B 154 GLY B 159 0 SHEET 2 F 7 THR B 167 ALA B 175 -1 O THR B 167 N GLY B 159 SHEET 3 F 7 LEU B 190 THR B 192 -1 O GLN B 191 N ALA B 175 SHEET 4 F 7 GLY B 233 PRO B 237 -1 O GLY B 233 N THR B 192 SHEET 5 F 7 LEU B 212 SER B 219 -1 N THR B 217 O PHE B 234 SHEET 6 F 7 ALA B 204 ASN B 207 -1 N LEU B 205 O MET B 213 SHEET 7 F 7 VAL B 154 GLY B 159 -1 N ILE B 158 O ALA B 204 SHEET 1 G 2 GLY B 257 TYR B 258 0 SHEET 2 G 2 GLN B 349 GLU B 350 -1 O GLN B 349 N TYR B 258 SHEET 1 H 2 SER B 306 VAL B 307 0 SHEET 2 H 2 LYS B 310 PRO B 311 -1 O LYS B 310 N VAL B 307 SHEET 1 I 2 VAL B 330 ILE B 331 0 SHEET 2 I 2 VAL B 346 THR B 347 -1 O VAL B 346 N ILE B 331 SHEET 1 J 7 VAL C 58 GLY C 65 0 SHEET 2 J 7 GLU C 75 ILE C 84 -1 O GLY C 80 N VAL C 61 SHEET 3 J 7 TYR C 90 ASN C 94 -1 O ILE C 92 N VAL C 83 SHEET 4 J 7 LEU C 127 LYS C 131 -1 O LEU C 130 N ILE C 91 SHEET 5 J 7 VAL C 113 ASP C 122 -1 N LEU C 117 O LYS C 131 SHEET 6 J 7 GLN C 103 ALA C 107 -1 N ILE C 104 O ALA C 116 SHEET 7 J 7 VAL C 58 GLY C 65 -1 N ARG C 64 O GLN C 103 SHEET 1 K 7 VAL C 154 GLY C 159 0 SHEET 2 K 7 THR C 167 ARG C 178 -1 O GLY C 171 N VAL C 155 SHEET 3 K 7 PHE C 189 THR C 192 -1 O GLN C 191 N ALA C 175 SHEET 4 K 7 GLY C 233 PRO C 237 -1 O ALA C 235 N LEU C 190 SHEET 5 K 7 LEU C 212 SER C 219 -1 N LEU C 218 O PHE C 234 SHEET 6 K 7 ALA C 204 ASN C 207 -1 N LEU C 205 O MET C 213 SHEET 7 K 7 VAL C 154 GLY C 159 -1 N ILE C 158 O ALA C 204 SHEET 1 L 2 SER C 306 VAL C 307 0 SHEET 2 L 2 LYS C 310 PRO C 311 -1 O LYS C 310 N VAL C 307 SHEET 1 M 2 VAL C 330 ILE C 331 0 SHEET 2 M 2 VAL C 346 THR C 347 -1 O VAL C 346 N ILE C 331 CRYST1 205.984 142.710 41.167 90.00 89.24 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004855 0.000000 -0.000064 0.00000 SCALE2 0.000000 0.007007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024293 0.00000