PDB Short entry for 1SQN HEADER HORMONE/GROWTH FACTOR RECEPTOR 19-MAR-04 1SQN TITLE PROGESTERONE RECEPTOR LIGAND BINDING DOMAIN WITH BOUND NORETHINDRONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 676-933, LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: PR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMPGRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: GST-PR LBD; SOURCE 11 OTHER_DETAILS: GST FUSION KEYWDS PROGESTERONE RECEPTOR; NUCLEAR RECEPTOR; STEROID RECEPTOR; KEYWDS 2 NORETHINDRONE; BIRTH CONTROL, HORMONE-GROWTH FACTOR RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.P.WILLIAMS,K.P.MADAUSS,J.-S.DENG,R.J.H.AUSTIN,M.H.LAMBERT,I.MCLAY, AUTHOR 2 J.PRITCHARD,S.A.SHORT,E.L.STEWART,I.J.UINGS REVDAT 4 23-AUG-23 1SQN 1 REMARK REVDAT 3 31-JAN-18 1SQN 1 REMARK REVDAT 2 24-FEB-09 1SQN 1 VERSN REVDAT 1 27-JUL-04 1SQN 0 JRNL AUTH K.P.MADAUSS,J.-S.DENG,R.J.H.AUSTIN,M.H.LAMBERT,I.MCLAY, JRNL AUTH 2 J.PRITCHARD,S.A.SHORT,E.L.STEWART,I.J.UINGS,S.P.WILLIAMS JRNL TITL PROGESTERONE RECEPTOR LIGAND BINDING POCKET FLEXIBILITY: JRNL TITL 2 CRYSTAL STRUCTURES OF THE NORETHINDRONE AND MOMETASONE JRNL TITL 3 FUROATE COMPLEXES JRNL REF J.MED.CHEM. V. 47 3381 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 15189034 JRNL DOI 10.1021/JM030640N REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4101 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5563 ; 2.160 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 4.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;14.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.228 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2960 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2097 ; 0.239 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 102 ; 1.010 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 1.087 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2488 ; 1.522 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4018 ; 2.576 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1613 ; 3.851 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1545 ; 5.790 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54571 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.451 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1A28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, LI2SO4. HEPES PH 6.5, REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 22K, REMARK 280 TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.07100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 673 REMARK 465 THR A 674 REMARK 465 PHE A 675 REMARK 465 SER A 676 REMARK 465 PRO A 677 REMARK 465 GLY A 678 REMARK 465 GLN A 679 REMARK 465 ASP A 680 REMARK 465 ILE A 681 REMARK 465 THR A 706 REMARK 465 LYS A 707 REMARK 465 LYS A 861 REMARK 465 LYS A 933 REMARK 465 PHE B 673 REMARK 465 THR B 674 REMARK 465 PHE B 675 REMARK 465 SER B 676 REMARK 465 PRO B 677 REMARK 465 GLY B 678 REMARK 465 GLN B 679 REMARK 465 ASP B 680 REMARK 465 ILE B 681 REMARK 465 GLN B 682 REMARK 465 LYS B 861 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 682 CG CD OE1 NE2 REMARK 470 LEU A 683 CG CD1 CD2 REMARK 470 ASP A 704 CG OD1 OD2 REMARK 470 ARG A 788 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 836 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 840 CG CD OE1 NE2 REMARK 470 GLN A 886 CG CD OE1 NE2 REMARK 470 LYS A 932 CG CD CE NZ REMARK 470 LEU B 683 CG CD1 CD2 REMARK 470 VAL B 698 CG1 CG2 REMARK 470 THR B 706 OG1 CG2 REMARK 470 LYS B 707 CG CD CE NZ REMARK 470 LYS B 790 CG CD CE NZ REMARK 470 GLN B 812 CG CD OE1 NE2 REMARK 470 GLN B 868 CG CD OE1 NE2 REMARK 470 GLU B 911 CG CD OE1 OE2 REMARK 470 LYS B 932 CG CD CE NZ REMARK 470 LYS B 933 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 87 O HOH B 258 0.05 REMARK 500 O HOH B 139 O HOH B 281 0.05 REMARK 500 CB ILE B 744 O HOH B 260 0.26 REMARK 500 CG1 ILE A 751 O HOH A 270 0.31 REMARK 500 CG LYS B 731 O HOH B 274 0.36 REMARK 500 CB SER B 902 O HOH B 261 0.76 REMARK 500 OG SER B 902 O HOH B 261 1.25 REMARK 500 CD LYS B 731 O HOH B 274 1.26 REMARK 500 CG1 ILE B 744 O HOH B 260 1.44 REMARK 500 CD2 HIS B 743 O HOH B 139 1.44 REMARK 500 CD1 ILE A 751 O HOH A 270 1.45 REMARK 500 CD2 HIS B 743 O HOH B 281 1.48 REMARK 500 CG GLN A 815 O HOH A 265 1.51 REMARK 500 CG2 ILE B 744 O HOH B 260 1.53 REMARK 500 SD MET A 692 O HOH A 264 1.64 REMARK 500 CB LYS B 731 O HOH B 274 1.72 REMARK 500 CB ILE A 751 O HOH A 270 1.79 REMARK 500 CA ILE B 744 O HOH B 260 1.80 REMARK 500 CD GLN A 815 O HOH A 265 1.80 REMARK 500 CA SER B 902 O HOH B 261 1.89 REMARK 500 CG HIS B 743 O HOH B 139 1.94 REMARK 500 CG HIS B 743 O HOH B 281 1.95 REMARK 500 NE2 GLN A 815 O HOH A 265 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 85 O HOH A 256 2556 0.03 REMARK 500 O HOH A 86 O HOH A 259 2556 0.04 REMARK 500 O HOH A 283 O HOH B 123 1556 0.72 REMARK 500 CB SER B 847 O HOH A 257 1554 0.90 REMARK 500 NE2 GLN A 787 O HOH B 277 2545 1.37 REMARK 500 OG SER B 847 O HOH A 257 1554 1.60 REMARK 500 CA SER B 847 O HOH A 257 1554 1.94 REMARK 500 CE LYS A 854 O HOH B 262 1556 1.95 REMARK 500 OE1 GLU B 904 O HOH B 272 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 692 SD MET A 692 CE -0.341 REMARK 500 TRP A 765 CE3 TRP A 765 CZ3 0.103 REMARK 500 SER A 772 CA SER A 772 CB 0.093 REMARK 500 PHE A 808 CE2 PHE A 808 CD2 0.151 REMARK 500 GLN B 720 CG GLN B 720 CD 0.163 REMARK 500 TYR B 777 CG TYR B 777 CD2 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 697 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 740 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 753 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 825 CB - CG - CD2 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 869 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 869 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU A 880 CB - CG - CD1 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 850 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 869 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 869 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 869 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 878 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 782 80.32 -154.47 REMARK 500 MET A 789 72.14 -110.60 REMARK 500 SER A 837 45.00 -93.14 REMARK 500 GLN A 916 -20.04 -145.98 REMARK 500 MET A 924 39.50 -85.33 REMARK 500 SER B 793 -8.43 97.83 REMARK 500 PHE B 794 50.43 -142.31 REMARK 500 SER B 837 52.24 -104.14 REMARK 500 MET B 924 45.99 -94.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDR A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDR B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A28 RELATED DB: PDB REMARK 900 HORMONE-BOUND HUMAN PROGESTERONE RECEPTOR LIGAND-BINDING DOMAIN REMARK 900 RELATED ID: 1E3K RELATED DB: PDB REMARK 900 HUMAN PROGESTERON RECEPTOR LIGAND BINDING DOMAIN IN COMPLEX WITH REMARK 900 THE LIGAND METRIBOLONE (R1881) REMARK 900 RELATED ID: 1ZYX RELATED DB: PDB REMARK 900 PLACE FOR DESCRIPTION OF A NEWLY DEPOSITED STRUCTURE 1ZYX DBREF 1SQN A 673 933 UNP P06401 PRGR_HUMAN 673 933 DBREF 1SQN B 673 933 UNP P06401 PRGR_HUMAN 673 933 SEQRES 1 A 261 PHE THR PHE SER PRO GLY GLN ASP ILE GLN LEU ILE PRO SEQRES 2 A 261 PRO LEU ILE ASN LEU LEU MET SER ILE GLU PRO ASP VAL SEQRES 3 A 261 ILE TYR ALA GLY HIS ASP ASN THR LYS PRO ASP THR SER SEQRES 4 A 261 SER SER LEU LEU THR SER LEU ASN GLN LEU GLY GLU ARG SEQRES 5 A 261 GLN LEU LEU SER VAL VAL LYS TRP SER LYS SER LEU PRO SEQRES 6 A 261 GLY PHE ARG ASN LEU HIS ILE ASP ASP GLN ILE THR LEU SEQRES 7 A 261 ILE GLN TYR SER TRP MET SER LEU MET VAL PHE GLY LEU SEQRES 8 A 261 GLY TRP ARG SER TYR LYS HIS VAL SER GLY GLN MET LEU SEQRES 9 A 261 TYR PHE ALA PRO ASP LEU ILE LEU ASN GLU GLN ARG MET SEQRES 10 A 261 LYS GLU SER SER PHE TYR SER LEU CYS LEU THR MET TRP SEQRES 11 A 261 GLN ILE PRO GLN GLU PHE VAL LYS LEU GLN VAL SER GLN SEQRES 12 A 261 GLU GLU PHE LEU CYS MET LYS VAL LEU LEU LEU LEU ASN SEQRES 13 A 261 THR ILE PRO LEU GLU GLY LEU ARG SER GLN THR GLN PHE SEQRES 14 A 261 GLU GLU MET ARG SER SER TYR ILE ARG GLU LEU ILE LYS SEQRES 15 A 261 ALA ILE GLY LEU ARG GLN LYS GLY VAL VAL SER SER SER SEQRES 16 A 261 GLN ARG PHE TYR GLN LEU THR LYS LEU LEU ASP ASN LEU SEQRES 17 A 261 HIS ASP LEU VAL LYS GLN LEU HIS LEU TYR CYS LEU ASN SEQRES 18 A 261 THR PHE ILE GLN SER ARG ALA LEU SER VAL GLU PHE PRO SEQRES 19 A 261 GLU MET MET SER GLU VAL ILE ALA ALA GLN LEU PRO LYS SEQRES 20 A 261 ILE LEU ALA GLY MET VAL LYS PRO LEU LEU PHE HIS LYS SEQRES 21 A 261 LYS SEQRES 1 B 261 PHE THR PHE SER PRO GLY GLN ASP ILE GLN LEU ILE PRO SEQRES 2 B 261 PRO LEU ILE ASN LEU LEU MET SER ILE GLU PRO ASP VAL SEQRES 3 B 261 ILE TYR ALA GLY HIS ASP ASN THR LYS PRO ASP THR SER SEQRES 4 B 261 SER SER LEU LEU THR SER LEU ASN GLN LEU GLY GLU ARG SEQRES 5 B 261 GLN LEU LEU SER VAL VAL LYS TRP SER LYS SER LEU PRO SEQRES 6 B 261 GLY PHE ARG ASN LEU HIS ILE ASP ASP GLN ILE THR LEU SEQRES 7 B 261 ILE GLN TYR SER TRP MET SER LEU MET VAL PHE GLY LEU SEQRES 8 B 261 GLY TRP ARG SER TYR LYS HIS VAL SER GLY GLN MET LEU SEQRES 9 B 261 TYR PHE ALA PRO ASP LEU ILE LEU ASN GLU GLN ARG MET SEQRES 10 B 261 LYS GLU SER SER PHE TYR SER LEU CYS LEU THR MET TRP SEQRES 11 B 261 GLN ILE PRO GLN GLU PHE VAL LYS LEU GLN VAL SER GLN SEQRES 12 B 261 GLU GLU PHE LEU CYS MET LYS VAL LEU LEU LEU LEU ASN SEQRES 13 B 261 THR ILE PRO LEU GLU GLY LEU ARG SER GLN THR GLN PHE SEQRES 14 B 261 GLU GLU MET ARG SER SER TYR ILE ARG GLU LEU ILE LYS SEQRES 15 B 261 ALA ILE GLY LEU ARG GLN LYS GLY VAL VAL SER SER SER SEQRES 16 B 261 GLN ARG PHE TYR GLN LEU THR LYS LEU LEU ASP ASN LEU SEQRES 17 B 261 HIS ASP LEU VAL LYS GLN LEU HIS LEU TYR CYS LEU ASN SEQRES 18 B 261 THR PHE ILE GLN SER ARG ALA LEU SER VAL GLU PHE PRO SEQRES 19 B 261 GLU MET MET SER GLU VAL ILE ALA ALA GLN LEU PRO LYS SEQRES 20 B 261 ILE LEU ALA GLY MET VAL LYS PRO LEU LEU PHE HIS LYS SEQRES 21 B 261 LYS HET NDR A1001 22 HET NDR B2001 22 HETNAM NDR (14BETA,17ALPHA)-17-ETHYNYL-17-HYDROXYESTR-4-EN-3-ONE FORMUL 3 NDR 2(C20 H26 O2) FORMUL 5 HOH *276(H2 O) HELIX 1 1 PRO A 685 GLU A 695 1 11 HELIX 2 2 THR A 710 LEU A 736 1 27 HELIX 3 3 GLY A 738 LEU A 742 5 5 HELIX 4 4 HIS A 743 SER A 772 1 30 HELIX 5 5 ASN A 785 MET A 789 5 5 HELIX 6 6 GLU A 791 GLN A 812 1 22 HELIX 7 7 SER A 814 LEU A 827 1 14 HELIX 8 8 SER A 837 LEU A 858 1 22 HELIX 9 9 GLY A 862 GLN A 897 1 36 HELIX 10 10 GLN A 897 SER A 902 1 6 HELIX 11 11 PRO A 906 ALA A 922 1 17 HELIX 12 12 PRO B 685 ILE B 694 1 10 HELIX 13 13 THR B 710 LEU B 736 1 27 HELIX 14 14 GLY B 738 LEU B 742 5 5 HELIX 15 15 HIS B 743 SER B 772 1 30 HELIX 16 16 ASN B 785 GLU B 791 1 7 HELIX 17 17 PHE B 794 GLN B 812 1 19 HELIX 18 18 SER B 814 LEU B 827 1 14 HELIX 19 19 SER B 837 LEU B 858 1 22 HELIX 20 20 GLY B 862 GLN B 897 1 36 HELIX 21 21 GLN B 897 SER B 902 1 6 HELIX 22 22 PRO B 906 ALA B 922 1 17 SHEET 1 A 2 LEU A 776 ALA A 779 0 SHEET 2 A 2 LEU A 782 LEU A 784 -1 O LEU A 784 N LEU A 776 SHEET 1 B 2 THR A 829 ILE A 830 0 SHEET 2 B 2 LYS A 926 PRO A 927 -1 O LYS A 926 N ILE A 830 SHEET 1 C 2 LEU B 776 ALA B 779 0 SHEET 2 C 2 LEU B 782 LEU B 784 -1 O LEU B 784 N LEU B 776 SHEET 1 D 2 THR B 829 ILE B 830 0 SHEET 2 D 2 LYS B 926 PRO B 927 -1 O LYS B 926 N ILE B 830 SITE 1 AC1 9 HOH A 52 LEU A 715 LEU A 718 ASN A 719 SITE 2 AC1 9 GLN A 725 MET A 759 ARG A 766 MET A 801 SITE 3 AC1 9 CYS A 891 SITE 1 AC2 12 HOH B 28 LEU B 715 LEU B 718 ASN B 719 SITE 2 AC2 12 LEU B 721 GLN B 725 MET B 759 ARG B 766 SITE 3 AC2 12 LEU B 797 MET B 801 TYR B 890 CYS B 891 CRYST1 57.753 64.142 70.138 90.00 95.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017315 0.000000 0.001771 0.00000 SCALE2 0.000000 0.015590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014332 0.00000