PDB Short entry for 1SU5 HEADER ISOMERASE 26-MAR-04 1SU5 TITLE UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE HINGE TITLE 2 MUTANTS IN TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DF502; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBSX1C KEYWDS ARCHAE, EVOLUTION, FLEXIBLE LOOP-6, TIM, N-HINGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN,N.S.SAMPSON, AUTHOR 2 R.K.WIERENGA REVDAT 6 25-OCT-23 1SU5 1 REMARK REVDAT 5 10-NOV-21 1SU5 1 REMARK SEQADV REVDAT 4 11-OCT-17 1SU5 1 REMARK REVDAT 3 13-JUL-11 1SU5 1 VERSN REVDAT 2 24-FEB-09 1SU5 1 VERSN REVDAT 1 24-AUG-04 1SU5 0 JRNL AUTH I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN, JRNL AUTH 2 N.S.SAMPSON,R.K.WIERENGA JRNL TITL UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE JRNL TITL 2 HINGE MUTANTS IN TRIOSEPHOSPHATE ISOMERASE JRNL REF PROTEIN ENG.DES.SEL. V. 17 375 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15166315 JRNL DOI 10.1093/PROTEIN/GZH048 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.18000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : -4.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.319 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3879 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3483 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5245 ; 1.235 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8139 ; 0.778 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4294 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 947 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4225 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2237 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.297 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 0.268 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3876 ; 0.488 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1449 ; 1.088 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1369 ; 1.459 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 248 REMARK 3 RESIDUE RANGE : A 300 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2547 22.6370 31.5638 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0146 REMARK 3 T33: 0.0528 T12: 0.0083 REMARK 3 T13: 0.0118 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.9251 L22: 1.5527 REMARK 3 L33: 1.5248 L12: 0.3274 REMARK 3 L13: -0.1677 L23: -0.2972 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.1098 S13: -0.2576 REMARK 3 S21: 0.0468 S22: 0.0515 S23: -0.0749 REMARK 3 S31: 0.2172 S32: 0.0424 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 248 REMARK 3 RESIDUE RANGE : B 1300 B 1300 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4432 53.3281 17.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: 0.0501 REMARK 3 T33: 0.0483 T12: -0.0199 REMARK 3 T13: -0.0186 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.6465 L22: 2.2294 REMARK 3 L33: 2.1841 L12: 0.0835 REMARK 3 L13: 0.1316 L23: -0.2526 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: 0.1290 S13: 0.2978 REMARK 3 S21: 0.0242 S22: 0.0945 S23: 0.0775 REMARK 3 S31: -0.2999 S32: -0.1349 S33: 0.0499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : TRIANGULAR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 8TIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, AMMONIUM SULPHATE, SODIUM REMARK 280 CHLORIDE, 2-PHOSPHOGLYCOLATE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.68800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.37800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.37800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.84400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.37800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.37800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.53200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.37800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.37800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.84400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.37800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.37800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.53200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.68800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS ONE BIOLOGICAL UNIT, DIMER (CHAINS REMARK 300 A AND B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 237 O HOH A 388 2.07 REMARK 500 O HOH B 1308 O HOH B 1314 2.13 REMARK 500 O HOH A 398 O HOH A 420 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -145.47 53.46 REMARK 500 ASN A 65 163.10 178.74 REMARK 500 ASN A 174 72.24 -119.72 REMARK 500 VAL A 196 -83.07 -116.95 REMARK 500 ASN A 245 36.70 -99.87 REMARK 500 LYS B 13 -145.17 56.71 REMARK 500 VAL B 196 -81.93 -114.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SPQ RELATED DB: PDB REMARK 900 A176K MUTANT REMARK 900 RELATED ID: 1SQ7 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS REMARK 900 RELATED ID: 1SSD RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS REMARK 900 RELATED ID: 1SSG RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS WITH PGA REMARK 900 RELATED ID: 1SW0 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS WITH PGA REMARK 900 RELATED ID: 1SW3 RELATED DB: PDB REMARK 900 T175V MUTANT REMARK 900 RELATED ID: 1SW7 RELATED DB: PDB REMARK 900 K174N, T175S, A176S MUTANTS DBREF 1SU5 A 2 248 UNP P00940 TPIS_CHICK 1 247 DBREF 1SU5 B 2 248 UNP P00940 TPIS_CHICK 1 247 SEQADV 1SU5 ASN A 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SU5 PRO A 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQADV 1SU5 ASN A 176 UNP P00940 ALA 175 ENGINEERED MUTATION SEQADV 1SU5 ASN B 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SU5 PRO B 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQADV 1SU5 ASN B 176 UNP P00940 ALA 175 ENGINEERED MUTATION SEQRES 1 A 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 A 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 A 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 A 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 A 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 A 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 A 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 A 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 A 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 A 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 A 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 A 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 A 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 247 GLY THR GLY ASN PRO ASN THR PRO GLN GLN ALA GLN GLU SEQRES 15 A 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS VAL SEQRES 16 A 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 A 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 A 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS SEQRES 1 B 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 B 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 B 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 B 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 B 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 B 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 B 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 B 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 B 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 B 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 B 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 B 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 B 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 247 GLY THR GLY ASN PRO ASN THR PRO GLN GLN ALA GLN GLU SEQRES 15 B 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS VAL SEQRES 16 B 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 B 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 B 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS HET PGA A 300 9 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET GOL A 305 6 HET PGA B1300 9 HET SO4 B1301 5 HET SO4 B1302 5 HET SO4 B1303 5 HET SO4 B1304 5 HET SO4 B1305 5 HET GOL B 1 6 HET GOL B1306 6 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 4 SO4 9(O4 S 2-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 17 HOH *220(H2 O) HELIX 1 1 ASP A 17 ALA A 31 1 15 HELIX 2 2 PRO A 44 ILE A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 ILE A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 GLY A 137 1 8 HELIX 8 8 ILE A 138 ASP A 152 1 15 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 ILE A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 ASN A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 PRO A 238 5 7 HELIX 15 15 GLU A 239 ASN A 245 1 7 HELIX 16 16 ASP B 17 ALA B 31 1 15 HELIX 17 17 PRO B 44 ILE B 46 5 3 HELIX 18 18 TYR B 47 LEU B 55 1 9 HELIX 19 19 SER B 79 ILE B 86 1 8 HELIX 20 20 HIS B 95 VAL B 101 1 7 HELIX 21 21 SER B 105 GLU B 119 1 15 HELIX 22 22 LYS B 130 ALA B 136 1 7 HELIX 23 23 ILE B 138 ASP B 152 1 15 HELIX 24 24 ASP B 156 SER B 158 5 3 HELIX 25 25 PRO B 166 ILE B 170 5 5 HELIX 26 26 THR B 177 VAL B 196 1 20 HELIX 27 27 SER B 197 THR B 204 1 8 HELIX 28 28 ASN B 216 SER B 222 1 7 HELIX 29 29 GLY B 232 PRO B 238 5 7 HELIX 30 30 GLU B 239 ASN B 245 1 7 SHEET 1 A 9 PHE A 7 ASN A 11 0 SHEET 2 A 9 GLU A 38 ALA A 43 1 O GLY A 42 N GLY A 10 SHEET 3 A 9 GLY A 60 ALA A 63 1 O GLY A 60 N CYS A 41 SHEET 4 A 9 TRP A 90 LEU A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O ALA A 163 N ALA A 125 SHEET 7 A 9 ARG A 205 GLY A 209 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 7 ASN A 11 1 N ASN A 11 O VAL A 231 SHEET 1 B 9 PHE B 7 ASN B 11 0 SHEET 2 B 9 GLU B 38 ALA B 43 1 O GLY B 42 N GLY B 10 SHEET 3 B 9 GLY B 60 ALA B 63 1 O GLY B 60 N CYS B 41 SHEET 4 B 9 TRP B 90 LEU B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 B 9 VAL B 160 TYR B 164 1 O ALA B 163 N ALA B 125 SHEET 7 B 9 ARG B 205 GLY B 209 1 O ILE B 207 N LEU B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 7 ASN B 11 1 N ASN B 11 O VAL B 231 SITE 1 AC1 14 LYS A 13 HIS A 95 GLU A 165 ILE A 170 SITE 2 AC1 14 GLY A 171 GLY A 210 SER A 211 LEU A 230 SITE 3 AC1 14 GLY A 232 GLY A 233 HOH A 319 HOH A 330 SITE 4 AC1 14 HOH A 360 HOH A 396 SITE 1 AC2 14 LYS B 13 HIS B 95 GLU B 165 ALA B 169 SITE 2 AC2 14 ILE B 170 GLY B 171 GLY B 210 SER B 211 SITE 3 AC2 14 LEU B 230 GLY B 232 GLY B 233 HOH B1309 SITE 4 AC2 14 HOH B1317 HOH B1332 SITE 1 AC3 4 ASP A 56 ALA A 57 HOH A 364 LYS B 5 SITE 1 AC4 2 SER B 197 ASP B 198 SITE 1 AC5 4 SER B 96 HIS B 100 VAL B 101 VAL B 167 SITE 1 AC6 2 SER A 197 ASP A 198 SITE 1 AC7 4 ALA B 114 HIS B 115 ALA B 118 HOH B1324 SITE 1 AC8 7 LYS A 58 LEU B 33 SER B 34 ALA B 35 SITE 2 AC8 7 THR B 37 LYS B 58 HOH B1361 SITE 1 AC9 4 LYS A 5 ASP B 56 ALA B 57 HOH B1312 SITE 1 BC1 3 ASP A 132 GLU A 133 ALA A 136 SITE 1 BC2 5 LYS A 68 ALA A 114 HIS A 115 ALA A 118 SITE 2 BC2 5 HOH A 379 SITE 1 BC3 2 LYS B 32 LYS B 148 SITE 1 BC4 5 ASP A 49 GLN A 53 LYS B 18 ASP B 49 SITE 2 BC4 5 GLN B 53 SITE 1 BC5 2 LYS A 68 GLN A 111 CRYST1 86.756 86.756 163.376 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006121 0.00000