PDB Short entry for 1SW0 HEADER ISOMERASE 30-MAR-04 1SW0 TITLE TRIOSEPHOSPHATE ISOMERASE FROM GALLUS GALLUS, LOOP 6 HINGE MUTANT TITLE 2 K174L, T175W COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, FLEXIBLE LOOP, HINGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN,N.S.SAMPSON, AUTHOR 2 R.K.WIERENGA REVDAT 5 25-OCT-23 1SW0 1 REMARK REVDAT 4 10-NOV-21 1SW0 1 REMARK SEQADV REVDAT 3 13-JUL-11 1SW0 1 VERSN REVDAT 2 24-FEB-09 1SW0 1 VERSN REVDAT 1 24-AUG-04 1SW0 0 JRNL AUTH I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN, JRNL AUTH 2 N.S.SAMPSON,R.K.WIERENGA JRNL TITL UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE JRNL TITL 2 HINGE MUTANTS IN TRIOSEPHOSPHATE ISOMERASE JRNL REF PROTEIN ENG.DES.SEL. V. 17 375 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15166315 JRNL DOI 10.1093/PROTEIN/GZH048 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 40543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3838 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3490 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5190 ; 1.471 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8140 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4296 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 738 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 729 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3909 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2253 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2428 ; 0.718 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3868 ; 1.235 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 2.116 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1322 ; 3.257 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 45 6 REMARK 3 1 B 2 B 45 6 REMARK 3 2 A 47 A 55 6 REMARK 3 2 B 47 B 55 6 REMARK 3 3 A 57 A 248 6 REMARK 3 3 B 57 B 248 6 REMARK 3 4 A 350 A 350 6 REMARK 3 4 B 1350 B 1350 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 3585 ; 0.27 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 11 ; 0.08 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 3585 ; 1.32 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 11 ; 0.82 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 248 REMARK 3 RESIDUE RANGE : A 350 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4280 8.4520 12.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: 0.2232 REMARK 3 T33: 0.2226 T12: 0.0020 REMARK 3 T13: 0.0050 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.6338 L22: 1.2695 REMARK 3 L33: 2.0808 L12: -0.0308 REMARK 3 L13: 0.1057 L23: 0.2775 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0323 S13: 0.0178 REMARK 3 S21: -0.1141 S22: -0.0347 S23: 0.0156 REMARK 3 S31: -0.0457 S32: -0.1326 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 248 REMARK 3 RESIDUE RANGE : B 1350 B 1350 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9180 10.2630 42.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.2349 REMARK 3 T33: 0.2368 T12: -0.0126 REMARK 3 T13: -0.0049 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8494 L22: 1.0781 REMARK 3 L33: 2.9144 L12: -0.2005 REMARK 3 L13: 0.6031 L23: -0.6710 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0269 S13: 0.0315 REMARK 3 S21: 0.0485 S22: -0.0439 S23: -0.1344 REMARK 3 S31: 0.0194 S32: 0.2439 S33: 0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 13.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1TPH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M NA-CITRATE, 0.1M TEA, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.87200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.92300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.72350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.92300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.87200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.72350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1508 O HOH B 1536 1.92 REMARK 500 O HOH A 361 O HOH A 527 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 LEU B 55 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 242 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -146.12 56.04 REMARK 500 VAL A 196 -80.77 -120.49 REMARK 500 PRO B 3 179.10 -59.33 REMARK 500 LYS B 13 -141.53 53.71 REMARK 500 MET B 14 67.41 -101.46 REMARK 500 ASN B 65 156.07 175.91 REMARK 500 VAL B 196 -89.84 -116.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA B 1350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SPQ RELATED DB: PDB REMARK 900 A176K MUTANT REMARK 900 RELATED ID: 1SQ7 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS REMARK 900 RELATED ID: 1SSD RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS REMARK 900 RELATED ID: 1SSG RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS WITH PGA REMARK 900 RELATED ID: 1SU5 RELATED DB: PDB REMARK 900 K174N, T175P, A176N MUTANTS REMARK 900 RELATED ID: 1SW3 RELATED DB: PDB REMARK 900 T175V MUTANT REMARK 900 RELATED ID: 1SW7 RELATED DB: PDB REMARK 900 K174N, T175S, A176S MUTANTS DBREF 1SW0 A 1 248 UNP P00940 TPIS_CHICK 0 247 DBREF 1SW0 B 1 248 UNP P00940 TPIS_CHICK 0 247 SEQADV 1SW0 LEU A 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SW0 TRP A 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQADV 1SW0 LEU B 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SW0 TRP B 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 A 248 MET ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS SEQRES 3 A 248 THR LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL SEQRES 4 A 248 VAL CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG SEQRES 5 A 248 GLN LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN SEQRES 6 A 248 CYS TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SEQRES 7 A 248 SER PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL SEQRES 8 A 248 ILE LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 A 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 A 248 ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 A 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 A 248 PHE GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP SEQRES 13 A 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 A 248 ILE GLY THR GLY LEU TRP ALA THR PRO GLN GLN ALA GLN SEQRES 15 A 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS SEQRES 16 A 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 A 248 GLY GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SEQRES 18 A 248 SER GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 A 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 A 248 HIS SEQRES 1 B 248 MET ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 B 248 MET ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS SEQRES 3 B 248 THR LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL SEQRES 4 B 248 VAL CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG SEQRES 5 B 248 GLN LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN SEQRES 6 B 248 CYS TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SEQRES 7 B 248 SER PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL SEQRES 8 B 248 ILE LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 B 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 B 248 ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 B 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 B 248 PHE GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP SEQRES 13 B 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 B 248 ILE GLY THR GLY LEU TRP ALA THR PRO GLN GLN ALA GLN SEQRES 15 B 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS SEQRES 16 B 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 B 248 GLY GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SEQRES 18 B 248 SER GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 B 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 B 248 HIS HET PGA A 350 9 HET PGA B1350 9 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 5 HOH *364(H2 O) HELIX 1 1 ASP A 17 ALA A 31 1 15 HELIX 2 2 PRO A 44 ILE A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 ILE A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 ALA A 136 1 7 HELIX 8 8 ILE A 138 ASP A 152 1 15 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 ILE A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 ASN A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 PRO A 238 5 7 HELIX 15 15 GLU A 239 ASN A 245 1 7 HELIX 16 16 ASP B 17 ALA B 31 1 15 HELIX 17 17 PRO B 44 ILE B 46 5 3 HELIX 18 18 TYR B 47 LEU B 55 1 9 HELIX 19 19 SER B 79 ILE B 86 1 8 HELIX 20 20 HIS B 95 VAL B 101 1 7 HELIX 21 21 SER B 105 GLU B 119 1 15 HELIX 22 22 LYS B 130 GLY B 137 1 8 HELIX 23 23 ILE B 138 ASP B 152 1 15 HELIX 24 24 ASP B 156 SER B 158 5 3 HELIX 25 25 PRO B 166 ILE B 170 5 5 HELIX 26 26 THR B 177 VAL B 196 1 20 HELIX 27 27 SER B 197 THR B 204 1 8 HELIX 28 28 ASN B 216 SER B 222 1 7 HELIX 29 29 GLY B 232 PRO B 238 5 7 HELIX 30 30 GLU B 239 ASN B 245 1 7 SHEET 1 A 9 PHE A 6 ASN A 11 0 SHEET 2 A 9 THR A 37 GLY A 42 1 O GLY A 42 N GLY A 10 SHEET 3 A 9 GLY A 60 ALA A 63 1 O GLY A 60 N CYS A 41 SHEET 4 A 9 TRP A 90 LEU A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O ILE A 124 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O ALA A 163 N ALA A 125 SHEET 7 A 9 ILE A 206 GLY A 209 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 11 1 N ASN A 11 O VAL A 231 SHEET 1 B 9 PHE B 6 ASN B 11 0 SHEET 2 B 9 THR B 37 ALA B 43 1 O GLY B 42 N GLY B 10 SHEET 3 B 9 ILE B 59 ALA B 63 1 O GLY B 60 N VAL B 39 SHEET 4 B 9 TRP B 90 LEU B 93 1 O TRP B 90 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O ILE B 124 N VAL B 91 SHEET 6 B 9 VAL B 160 TYR B 164 1 O VAL B 161 N VAL B 123 SHEET 7 B 9 ILE B 206 GLY B 209 1 O ILE B 207 N LEU B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 11 1 N ASN B 11 O VAL B 231 SITE 1 AC1 14 LYS A 13 HIS A 95 GLU A 165 ALA A 169 SITE 2 AC1 14 ILE A 170 GLY A 171 SER A 211 LEU A 230 SITE 3 AC1 14 GLY A 232 GLY A 233 HOH A 352 HOH A 362 SITE 4 AC1 14 HOH A 390 HOH A 428 SITE 1 AC2 16 LYS B 13 HIS B 95 GLU B 165 ALA B 169 SITE 2 AC2 16 ILE B 170 GLY B 171 GLY B 210 SER B 211 SITE 3 AC2 16 LEU B 230 GLY B 232 GLY B 233 HOH B1367 SITE 4 AC2 16 HOH B1377 HOH B1406 HOH B1532 HOH B1535 CRYST1 57.744 73.447 135.846 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007361 0.00000