PDB Short entry for 1SW7 HEADER ISOMERASE 30-MAR-04 1SW7 TITLE TRIOSEPHOSPHATE ISOMERASE FROM GALLUS GALLUS, LOOP 6 MUTANT K174N, TITLE 2 T175S, A176S COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, FLEXIBLE LOOP, HINGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN,N.S.SAMPSON, AUTHOR 2 R.K.WIERENGA REVDAT 4 10-NOV-21 1SW7 1 REMARK SEQADV REVDAT 3 13-JUL-11 1SW7 1 VERSN REVDAT 2 24-FEB-09 1SW7 1 VERSN REVDAT 1 24-AUG-04 1SW7 0 JRNL AUTH I.KURSULA,M.SALIN,J.SUN,B.V.NORLEDGE,A.M.HAAPALAINEN, JRNL AUTH 2 N.S.SAMPSON,R.K.WIERENGA JRNL TITL UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE JRNL TITL 2 HINGE MUTANTS IN TRIOSEPHOSPHATE ISOMERASE JRNL REF PROTEIN ENG.DES.SEL. V. 17 375 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15166315 JRNL DOI 10.1093/PROTEIN/GZH048 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3799 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3438 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5129 ; 1.309 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8029 ; 0.814 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4266 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 790 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3930 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2129 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 244 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.387 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.499 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2409 ; 0.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3837 ; 0.828 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 1.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1292 ; 2.518 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8817 23.0639 31.2005 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.0182 REMARK 3 T33: 0.0697 T12: 0.0187 REMARK 3 T13: 0.0130 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.2974 L22: 0.9442 REMARK 3 L33: 1.6520 L12: 0.0822 REMARK 3 L13: -0.3794 L23: -0.2356 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: -0.0373 S13: -0.2168 REMARK 3 S21: -0.0260 S22: 0.0684 S23: -0.0703 REMARK 3 S31: 0.3054 S32: 0.0408 S33: 0.0563 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6178 53.7612 16.8365 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0489 REMARK 3 T33: 0.0638 T12: -0.0256 REMARK 3 T13: -0.0067 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9993 L22: 1.4206 REMARK 3 L33: 1.3044 L12: 0.0676 REMARK 3 L13: 0.4434 L23: -0.3821 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.0769 S13: 0.2020 REMARK 3 S21: 0.0254 S22: 0.0928 S23: 0.0741 REMARK 3 S31: -0.1906 S32: -0.0561 S33: 0.0096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31858 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1SW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M AMMONIUM SULFATE, 0.1M NA REMARK 280 -CITRATE, 0.2M NACL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.47100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.60900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.60900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.73550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.60900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.60900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.20650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.60900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.60900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.73550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.60900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.60900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.20650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.47100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1450 O HOH A 1451 1.32 REMARK 500 O ASN B 174 O HOH B 2413 1.41 REMARK 500 O ASN A 174 O HOH A 1416 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1476 O HOH B 2441 3555 1.87 REMARK 500 ND2 ASN A 174 O HOH B 2441 3555 2.15 REMARK 500 O TRP B 168 O HOH A 1450 4454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 138 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 242 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -145.38 55.09 REMARK 500 VAL A 196 -77.93 -110.78 REMARK 500 ASN A 245 34.52 -97.75 REMARK 500 LYS B 13 -148.21 58.16 REMARK 500 VAL B 196 -83.86 -118.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGA B 2350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SPQ RELATED DB: PDB REMARK 900 A176K MUTANT REMARK 900 RELATED ID: 1SQ7 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS REMARK 900 RELATED ID: 1SSD RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS REMARK 900 RELATED ID: 1SSG RELATED DB: PDB REMARK 900 K174Y, T175S, A176L MUTANTS WITH PGA REMARK 900 RELATED ID: 1SU5 RELATED DB: PDB REMARK 900 K174N, T175P, A176N MUTANTS REMARK 900 RELATED ID: 1SW0 RELATED DB: PDB REMARK 900 K174L, T175W MUTANTS WITH PGA REMARK 900 RELATED ID: 1SW3 RELATED DB: PDB REMARK 900 T175V MUTANT DBREF 1SW7 A 1 248 UNP P00940 TPIS_CHICK 0 247 DBREF 1SW7 B 1 248 UNP P00940 TPIS_CHICK 0 247 SEQADV 1SW7 ASN A 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SW7 SER A 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQADV 1SW7 SER A 176 UNP P00940 ALA 175 ENGINEERED MUTATION SEQADV 1SW7 ASN B 174 UNP P00940 LYS 173 ENGINEERED MUTATION SEQADV 1SW7 SER B 175 UNP P00940 THR 174 ENGINEERED MUTATION SEQADV 1SW7 SER B 176 UNP P00940 ALA 175 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 A 248 MET ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS SEQRES 3 A 248 THR LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL SEQRES 4 A 248 VAL CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG SEQRES 5 A 248 GLN LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN SEQRES 6 A 248 CYS TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SEQRES 7 A 248 SER PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL SEQRES 8 A 248 ILE LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 A 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 A 248 ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 A 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 A 248 PHE GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP SEQRES 13 A 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 A 248 ILE GLY THR GLY ASN SER SER THR PRO GLN GLN ALA GLN SEQRES 15 A 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS SEQRES 16 A 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 A 248 GLY GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SEQRES 18 A 248 SER GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 A 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 A 248 HIS SEQRES 1 B 248 MET ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 B 248 MET ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS SEQRES 3 B 248 THR LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL SEQRES 4 B 248 VAL CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG SEQRES 5 B 248 GLN LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN SEQRES 6 B 248 CYS TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SEQRES 7 B 248 SER PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL SEQRES 8 B 248 ILE LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 B 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 B 248 ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 B 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 B 248 PHE GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP SEQRES 13 B 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 B 248 ILE GLY THR GLY ASN SER SER THR PRO GLN GLN ALA GLN SEQRES 15 B 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER HIS SEQRES 16 B 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 B 248 GLY GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SEQRES 18 B 248 SER GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 B 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 B 248 HIS HET PGA A1350 9 HET PGA B2350 9 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 5 HOH *287(H2 O) HELIX 1 1 ASP A 17 GLY A 30 1 14 HELIX 2 2 PRO A 44 ILE A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 ILE A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 GLY A 137 1 8 HELIX 8 8 ILE A 138 ASP A 152 1 15 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 ILE A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 ASN A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 PRO A 238 5 7 HELIX 15 15 GLU A 239 ASN A 245 1 7 HELIX 16 16 ASP B 17 ALA B 31 1 15 HELIX 17 17 PRO B 44 ILE B 46 5 3 HELIX 18 18 TYR B 47 LEU B 55 1 9 HELIX 19 19 SER B 79 ILE B 86 1 8 HELIX 20 20 HIS B 95 VAL B 101 1 7 HELIX 21 21 SER B 105 GLY B 120 1 16 HELIX 22 22 LYS B 130 ALA B 136 1 7 HELIX 23 23 ILE B 138 ASP B 152 1 15 HELIX 24 24 ASP B 156 SER B 158 5 3 HELIX 25 25 PRO B 166 ILE B 170 5 5 HELIX 26 26 THR B 177 VAL B 196 1 20 HELIX 27 27 SER B 197 THR B 204 1 8 HELIX 28 28 ASN B 216 SER B 222 1 7 HELIX 29 29 GLY B 232 PRO B 238 5 7 HELIX 30 30 GLU B 239 ASN B 245 1 7 SHEET 1 A 9 PHE A 6 ASN A 11 0 SHEET 2 A 9 THR A 37 GLY A 42 1 O GLY A 42 N GLY A 10 SHEET 3 A 9 GLY A 60 ALA A 63 1 O GLY A 60 N VAL A 39 SHEET 4 A 9 TRP A 90 LEU A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O ALA A 163 N ALA A 125 SHEET 7 A 9 ILE A 206 GLY A 209 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 11 1 N ASN A 11 O VAL A 231 SHEET 1 B 9 PHE B 6 ASN B 11 0 SHEET 2 B 9 THR B 37 ALA B 43 1 O GLY B 42 N GLY B 10 SHEET 3 B 9 ILE B 59 ALA B 63 1 O GLY B 60 N VAL B 39 SHEET 4 B 9 TRP B 90 LEU B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 B 9 VAL B 160 TYR B 164 1 O ALA B 163 N ALA B 125 SHEET 7 B 9 ILE B 206 GLY B 209 1 O ILE B 207 N LEU B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 11 1 N ASN B 11 O VAL B 231 SITE 1 AC1 15 LYS A 13 HIS A 95 GLU A 165 ALA A 169 SITE 2 AC1 15 ILE A 170 GLY A 171 GLY A 210 SER A 211 SITE 3 AC1 15 LEU A 230 GLY A 232 GLY A 233 HOH A1352 SITE 4 AC1 15 HOH A1397 HOH A1421 HOH A1463 SITE 1 AC2 15 LYS B 13 HIS B 95 GLU B 165 ALA B 169 SITE 2 AC2 15 ILE B 170 GLY B 171 GLY B 210 SER B 211 SITE 3 AC2 15 LEU B 230 GLY B 232 GLY B 233 HOH B2370 SITE 4 AC2 15 HOH B2391 HOH B2405 HOH B2470 CRYST1 87.218 87.218 162.942 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006137 0.00000