PDB Short entry for 1SX5 HEADER HYDROLASE/DNA 30-MAR-04 1SX5 TITLE K38A ECORV BOUND TO CLEAVED DNA AND MN2+: P1 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*AP*AP*GP*AP*T)-3'; COMPND 3 CHAIN: C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(P*AP*TP*CP*TP*T)-3'; COMPND 7 CHAIN: D, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TYPE II RESTRICTION ENZYME ECORV; COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: ENDONUCLEASE ECORV, R.ECORV; COMPND 13 EC: 3.1.21.4; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 GENE: ECORVR; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: MM294 (ENDI-, PRO-, THI-, RK-MK+); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PBSRV KEYWDS ENDONUCLEASE, PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HORTON,J.J.PERONA REVDAT 6 14-FEB-24 1SX5 1 REMARK REVDAT 5 27-OCT-21 1SX5 1 SEQADV REVDAT 4 28-JUL-21 1SX5 1 REMARK LINK REVDAT 3 24-FEB-09 1SX5 1 VERSN REVDAT 2 22-JUN-04 1SX5 1 JRNL REVDAT 1 06-APR-04 1SX5 0 JRNL AUTH N.C.HORTON,J.J.PERONA JRNL TITL DNA CLEAVAGE BY ECORV ENDONUCLEASE: TWO METAL IONS IN THREE JRNL TITL 2 METAL ION BINDING SITES JRNL REF BIOCHEMISTRY V. 43 6841 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15170321 JRNL DOI 10.1021/BI0499056 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 74930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3791 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3864 REMARK 3 NUCLEIC ACID ATOMS : 448 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000022060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74930 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.1M HEPES, 0.15M NACL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 315K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 98 REMARK 465 GLU B 99 REMARK 465 ASN B 100 REMARK 465 ALA B 142 REMARK 465 THR B 143 REMARK 465 ARG B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 58 CD CE NZ REMARK 470 LYS A 67 CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 149 CD CE NZ REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 LYS A 197 CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLN A 224 CG CD OE1 NE2 REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS B 17 CD CE NZ REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 LYS B 29 CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 LYS B 79 CE NZ REMARK 470 GLU B 82 CD OE1 OE2 REMARK 470 ARG B 140 CD NE CZ NH1 NH2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 149 CE NZ REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LYS B 203 CD CE NZ REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 LEU B 225 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 530 O HOH A 531 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 7 P DA D 7 OP3 -0.090 REMARK 500 DA D 7 N9 DA D 7 C4 -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 6 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA D 7 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA D 7 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA D 7 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 9 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 SER A 35 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 ASP A 179 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 49 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -114.87 -101.59 REMARK 500 SER A 146 -7.06 -154.20 REMARK 500 PRO A 162 30.08 -89.60 REMARK 500 THR A 187 63.89 28.74 REMARK 500 ASP A 228 30.40 -99.50 REMARK 500 LYS A 229 -97.10 -138.05 REMARK 500 GLU B 82 75.56 -107.59 REMARK 500 SER B 112 -111.58 -99.84 REMARK 500 SER B 146 79.47 -60.79 REMARK 500 THR B 187 63.66 23.38 REMARK 500 LYS B 229 -85.12 -139.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 2 0.08 SIDE CHAIN REMARK 500 DT C 6 0.08 SIDE CHAIN REMARK 500 DA D 7 0.09 SIDE CHAIN REMARK 500 DT D 10 0.07 SIDE CHAIN REMARK 500 DA E 2 0.07 SIDE CHAIN REMARK 500 DA F 7 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA D 7 OP2 REMARK 620 2 GLU A 45 OE1 89.2 REMARK 620 3 ASP A 74 OD1 83.6 102.3 REMARK 620 4 HOH A 503 O 157.8 110.2 81.8 REMARK 620 5 HOH A 530 O 65.6 147.8 57.1 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA D 7 OP2 REMARK 620 2 HOH D 237 O 81.9 REMARK 620 3 HOH D 238 O 89.0 83.7 REMARK 620 4 GLU A 45 OE2 88.5 94.5 177.1 REMARK 620 5 ASP A 74 OD2 98.3 169.1 85.4 96.4 REMARK 620 6 ILE A 91 O 166.3 85.3 94.3 87.8 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 406 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT D 11 OP1 REMARK 620 2 HOH D 37 O 83.0 REMARK 620 3 HOH D 163 O 98.2 90.8 REMARK 620 4 HIS B 71 NE2 86.2 87.6 175.1 REMARK 620 5 HOH B 423 O 94.7 177.4 88.4 93.5 REMARK 620 6 HOH B 476 O 175.9 97.7 85.9 89.8 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 405 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA F 7 OP1 REMARK 620 2 DA F 7 OP3 69.0 REMARK 620 3 ASP B 74 OD2 84.9 150.9 REMARK 620 4 ASP B 90 OD2 82.0 83.2 80.5 REMARK 620 5 ILE B 91 O 160.7 97.6 104.1 82.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 409 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT F 11 OP1 REMARK 620 2 HIS A 71 NE2 90.9 REMARK 620 3 HOH A 410 O 95.0 103.6 REMARK 620 4 HOH A 411 O 176.8 86.0 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 NE2 REMARK 620 2 HOH A 474 O 96.9 REMARK 620 3 HOH A 574 O 82.0 66.0 REMARK 620 4 HOH A 575 O 117.6 119.0 70.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 195 ND1 REMARK 620 2 ASP A 198 OD2 102.4 REMARK 620 3 HOH A 420 O 92.3 89.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 408 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 45 OE1 REMARK 620 2 GLU B 45 OE2 52.1 REMARK 620 3 ASP B 74 OD1 114.1 100.5 REMARK 620 4 HOH B 558 O 152.5 148.8 56.8 REMARK 620 5 HOH B 559 O 75.5 113.5 63.6 77.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 407 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 195 ND1 REMARK 620 2 ASP B 198 OD2 102.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SX8 RELATED DB: PDB DBREF 1SX5 A 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 1SX5 B 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 1SX5 C 1 6 PDB 1SX5 1SX5 1 6 DBREF 1SX5 D 7 11 PDB 1SX5 1SX5 7 11 DBREF 1SX5 E 1 6 PDB 1SX5 1SX5 1 6 DBREF 1SX5 F 7 11 PDB 1SX5 1SX5 7 11 SEQADV 1SX5 ALA A 38 UNP P04390 LYS 37 ENGINEERED MUTATION SEQADV 1SX5 ALA B 38 UNP P04390 LYS 37 ENGINEERED MUTATION SEQRES 1 C 6 DA DA DA DG DA DT SEQRES 1 D 5 DA DT DC DT DT SEQRES 1 E 6 DA DA DA DG DA DT SEQRES 1 F 5 DA DT DC DT DT SEQRES 1 A 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 A 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 A 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR ALA VAL LEU SEQRES 4 A 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 A 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 A 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 A 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 A 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 A 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 A 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 A 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 A 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 A 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 A 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 A 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 A 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 A 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 A 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 A 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS SEQRES 1 B 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 B 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 B 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR ALA VAL LEU SEQRES 4 B 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 B 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 B 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 B 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 B 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 B 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 B 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 B 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 B 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 B 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 B 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 B 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 B 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 B 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 B 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 B 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS HET MN A 401 1 HET MN A 402 1 HET MN A 403 1 HET MN A 404 1 HET MN A 409 1 HET MN B 405 1 HET MN B 406 1 HET MN B 407 1 HET MN B 408 1 HETNAM MN MANGANESE (II) ION FORMUL 7 MN 9(MN 2+) FORMUL 16 HOH *372(H2 O) HELIX 1 1 SER A 2 TYR A 18 1 17 HELIX 2 2 ASP A 36 HIS A 59 1 24 HELIX 3 3 PRO A 124 ASP A 126 5 3 HELIX 4 4 ASN A 152 ILE A 159 5 8 HELIX 5 5 LYS A 173 ALA A 177 1 5 HELIX 6 6 HIS A 195 GLY A 202 1 8 HELIX 7 7 SER A 208 ASN A 218 1 11 HELIX 8 8 THR A 222 ASN A 227 1 6 HELIX 9 9 ASN A 232 ARG A 242 1 11 HELIX 10 10 SER B 2 TYR B 18 1 17 HELIX 11 11 ASP B 36 HIS B 59 1 24 HELIX 12 12 PRO B 124 ASP B 126 5 3 HELIX 13 13 ASN B 152 ILE B 159 5 8 HELIX 14 14 LYS B 173 ALA B 177 1 5 HELIX 15 15 HIS B 195 GLY B 202 1 8 HELIX 16 16 SER B 208 ASN B 218 1 11 HELIX 17 17 THR B 222 ASN B 227 1 6 HELIX 18 18 ASN B 232 ARG B 242 1 11 SHEET 1 A 4 ILE A 30 PRO A 32 0 SHEET 2 A 4 VAL A 20 SER A 25 -1 N ILE A 23 O TYR A 31 SHEET 3 A 4 VAL B 20 SER B 25 -1 O ILE B 24 N CYS A 21 SHEET 4 A 4 ILE B 30 TYR B 31 -1 O TYR B 31 N ILE B 23 SHEET 1 B 5 ILE A 62 GLU A 64 0 SHEET 2 B 5 PHE A 75 TYR A 78 -1 O TYR A 78 N ILE A 62 SHEET 3 B 5 LYS A 86 THR A 96 -1 O ILE A 89 N PHE A 75 SHEET 4 B 5 TYR A 128 ARG A 140 1 O TRP A 132 N ALA A 88 SHEET 5 B 5 TYR A 163 ASP A 172 -1 O LYS A 164 N THR A 139 SHEET 1 C 2 THR A 106 GLY A 109 0 SHEET 2 C 2 ASN A 188 GLY A 190 -1 O ILE A 189 N GLY A 108 SHEET 1 D 5 ILE B 62 GLU B 64 0 SHEET 2 D 5 PHE B 75 TYR B 78 -1 O TYR B 78 N ILE B 62 SHEET 3 D 5 LYS B 86 THR B 96 -1 O ILE B 87 N LEU B 77 SHEET 4 D 5 TYR B 128 ARG B 140 1 O TRP B 132 N ALA B 88 SHEET 5 D 5 TYR B 163 ASP B 172 -1 O LYS B 164 N THR B 139 SHEET 1 E 2 THR B 106 GLY B 109 0 SHEET 2 E 2 ASN B 188 GLY B 190 -1 O ILE B 189 N LEU B 107 LINK OP2 DA D 7 MN MN A 401 1555 1555 2.15 LINK OP2 DA D 7 MN MN A 402 1555 1555 2.25 LINK OP1 DT D 11 MN MN B 406 1555 1555 2.19 LINK O HOH D 37 MN MN B 406 1555 1555 1.88 LINK O HOH D 163 MN MN B 406 1555 1555 2.18 LINK O HOH D 237 MN MN A 402 1555 1555 2.12 LINK O HOH D 238 MN MN A 402 1555 1555 1.88 LINK OP1 DA F 7 MN MN B 405 1555 1555 2.16 LINK OP3 DA F 7 MN MN B 405 1555 1555 2.24 LINK OP1 DT F 11 MN MN A 409 1555 1555 2.40 LINK OE1 GLU A 45 MN MN A 401 1555 1555 2.27 LINK OE2 GLU A 45 MN MN A 402 1555 1555 1.89 LINK NE2 HIS A 71 MN MN A 409 1555 1555 2.27 LINK OD1 ASP A 74 MN MN A 401 1555 1555 2.15 LINK OD2 ASP A 74 MN MN A 402 1555 1555 2.34 LINK O ILE A 91 MN MN A 402 1555 1555 2.31 LINK NE2 HIS A 193 MN MN A 403 1555 1555 2.14 LINK ND1 HIS A 195 MN MN A 404 1555 1555 2.30 LINK OD2 ASP A 198 MN MN A 404 1555 1555 2.32 LINK MN MN A 401 O HOH A 503 1555 1555 2.04 LINK MN MN A 401 O HOH A 530 1555 1555 2.74 LINK MN MN A 403 O HOH A 474 1555 1555 2.45 LINK MN MN A 403 O HOH A 574 1555 1555 2.02 LINK MN MN A 403 O HOH A 575 1555 1555 2.02 LINK MN MN A 404 O HOH A 420 1555 1555 2.10 LINK MN MN A 409 O HOH A 410 1555 1555 2.13 LINK MN MN A 409 O HOH A 411 1555 1555 2.33 LINK OE1 GLU B 45 MN MN B 408 1555 1555 2.77 LINK OE2 GLU B 45 MN MN B 408 1555 1555 2.04 LINK NE2 HIS B 71 MN MN B 406 1555 1555 2.19 LINK OD2 ASP B 74 MN MN B 405 1555 1555 2.28 LINK OD1 ASP B 74 MN MN B 408 1555 1555 2.26 LINK OD2 ASP B 90 MN MN B 405 1555 1555 2.40 LINK O ILE B 91 MN MN B 405 1555 1555 2.16 LINK ND1 HIS B 195 MN MN B 407 1555 1555 2.37 LINK OD2 ASP B 198 MN MN B 407 1555 1555 2.42 LINK MN MN B 406 O HOH B 423 1555 1555 2.48 LINK MN MN B 406 O HOH B 476 1555 1555 2.30 LINK MN MN B 408 O HOH B 558 1555 1555 2.38 LINK MN MN B 408 O HOH B 559 1555 1555 2.36 CISPEP 1 TYR A 72 PRO A 73 0 0.94 CISPEP 2 TYR B 72 PRO B 73 0 -0.08 SITE 1 AC1 6 GLU A 45 ASP A 74 MN A 402 HOH A 503 SITE 2 AC1 6 HOH A 530 DA D 7 SITE 1 AC2 7 GLU A 45 ASP A 74 ILE A 91 MN A 401 SITE 2 AC2 7 DA D 7 HOH D 237 HOH D 238 SITE 1 AC3 4 HIS A 193 HOH A 474 HOH A 574 HOH A 575 SITE 1 AC4 3 HIS A 195 ASP A 198 HOH A 420 SITE 1 AC5 4 ASP B 74 ASP B 90 ILE B 91 DA F 7 SITE 1 AC6 6 HIS B 71 HOH B 423 HOH B 476 DT D 11 SITE 2 AC6 6 HOH D 37 HOH D 163 SITE 1 AC7 2 HIS B 195 ASP B 198 SITE 1 AC8 5 GLU B 45 ASP B 74 HOH B 558 HOH B 559 SITE 2 AC8 5 DA F 7 SITE 1 AC9 4 HIS A 71 HOH A 410 HOH A 411 DT F 11 CRYST1 47.708 48.627 63.544 96.68 108.94 107.33 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020961 0.006541 0.008990 0.00000 SCALE2 0.000000 0.021543 0.005230 0.00000 SCALE3 0.000000 0.000000 0.017121 0.00000