PDB Short entry for 1SXE HEADER TRANSCRIPTION, SIGNALING PROTEIN 30-MAR-04 1SXE TITLE THE SOLUTION STRUCTURE OF THE POINTED (PNT) DOMAIN FROM THE TITLE 2 TRANSCRITION FACTOR ERG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ERG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PNT DOMAIN; COMPND 5 SYNONYM: TRANSFORMING PROTEIN ERG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA HELICAL, TRANSCRIPTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH,C.M.SLUPSKY, AUTHOR 2 L.P.MCINTOSH REVDAT 3 02-MAR-22 1SXE 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SXE 1 VERSN REVDAT 1 21-SEP-04 1SXE 0 JRNL AUTH C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH, JRNL AUTH 2 C.M.SLUPSKY,L.P.MCINTOSH JRNL TITL DIVERSITY IN STRUCTURE AND FUNCTION OF THE ETS FAMILY PNT JRNL TITL 2 DOMAINS. JRNL REF J.MOL.BIOL. V. 342 1249 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15351649 JRNL DOI 10.1016/J.JMB.2004.07.094 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000, ARIA 1.2 REMARK 3 AUTHORS : ACCELRYS INC. (FELIX), J.LINGE, S.O'DONOGHUE, REMARK 3 M.NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SXE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303; 303 REMARK 210 PH : 7.0; 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 70 MM; 70 MM; 70 MM; 70 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM ERG U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.0, 50MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% D2O; REMARK 210 1MM ERG 100%15N,10%13C, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.0, 50MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% D2O; REMARK 210 2MM ERG 100%15N, 20MM PHOSPHATE REMARK 210 BUFFER PH 7.0, 50MM NACL, 2MM REMARK 210 DTT, 90% H2O, 10% D2O; 2MM ERG REMARK 210 100%15N, 20MM PHOSPHATE BUFFER REMARK 210 PH 7.0, 50MM NACL, 2MM DTT, 1% REMARK 210 H2O, 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1995, SPARKY 3, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG LEU A 143 HG21 ILE A 157 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 11 PHE A 176 CE1 PHE A 176 CZ 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 117 -109.93 -88.49 REMARK 500 1 GLU A 122 -98.58 62.47 REMARK 500 1 ARG A 124 -152.58 -95.28 REMARK 500 1 ILE A 126 67.60 -64.81 REMARK 500 1 ALA A 129 21.38 -62.73 REMARK 500 1 PRO A 131 34.39 -64.85 REMARK 500 1 TRP A 145 -9.05 -57.11 REMARK 500 1 LEU A 158 7.93 -63.54 REMARK 500 1 MET A 171 131.08 -29.96 REMARK 500 1 THR A 180 89.43 -157.07 REMARK 500 1 SER A 182 -134.85 51.78 REMARK 500 2 SER A 106 80.99 61.52 REMARK 500 2 MET A 108 140.46 72.06 REMARK 500 2 LYS A 111 42.86 -91.24 REMARK 500 2 PRO A 116 100.03 -28.93 REMARK 500 2 GLU A 122 -92.27 -60.81 REMARK 500 2 ARG A 123 -40.29 -147.52 REMARK 500 2 ILE A 126 66.15 -69.08 REMARK 500 2 PRO A 131 26.89 -71.14 REMARK 500 2 TRP A 145 -9.19 -56.57 REMARK 500 2 LEU A 158 8.02 -58.38 REMARK 500 2 LEU A 179 -30.48 -130.23 REMARK 500 2 THR A 180 80.31 -153.55 REMARK 500 2 PRO A 181 -156.92 -90.58 REMARK 500 2 SER A 182 -91.49 68.77 REMARK 500 3 SER A 106 77.19 -100.42 REMARK 500 3 GLU A 110 34.34 -95.41 REMARK 500 3 MET A 113 74.15 -115.52 REMARK 500 3 THR A 119 18.49 -155.53 REMARK 500 3 THR A 120 -75.43 -88.50 REMARK 500 3 ASN A 121 47.32 -81.93 REMARK 500 3 ARG A 124 -64.04 -148.83 REMARK 500 3 PRO A 131 28.35 -75.82 REMARK 500 3 ASP A 154 76.64 -152.02 REMARK 500 3 LEU A 158 6.91 -64.42 REMARK 500 3 THR A 180 95.49 -162.06 REMARK 500 3 SER A 182 -178.37 61.58 REMARK 500 3 TYR A 183 -66.81 68.87 REMARK 500 4 MET A 108 -0.74 -154.23 REMARK 500 4 GLU A 109 -77.15 -77.72 REMARK 500 4 GLU A 110 -177.28 60.03 REMARK 500 4 LYS A 111 -14.07 74.75 REMARK 500 4 PRO A 116 103.90 -35.07 REMARK 500 4 ASN A 121 115.14 -179.39 REMARK 500 4 ARG A 123 -109.97 61.17 REMARK 500 4 ARG A 124 -85.42 -61.90 REMARK 500 4 VAL A 125 -37.65 -135.45 REMARK 500 4 ILE A 126 50.94 27.69 REMARK 500 4 PRO A 131 31.68 -73.64 REMARK 500 4 PRO A 153 46.59 -92.02 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 150 0.05 SIDE CHAIN REMARK 500 10 TYR A 150 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1SXE A 108 201 UNP P11308 ERG_HUMAN 115 208 SEQADV 1SXE GLY A 105 UNP P11308 CLONING ARTIFACT SEQADV 1SXE SER A 106 UNP P11308 CLONING ARTIFACT SEQADV 1SXE HIS A 107 UNP P11308 CLONING ARTIFACT SEQRES 1 A 97 GLY SER HIS MET GLU GLU LYS HIS MET PRO PRO PRO ASN SEQRES 2 A 97 MET THR THR ASN GLU ARG ARG VAL ILE VAL PRO ALA ASP SEQRES 3 A 97 PRO THR LEU TRP SER THR ASP HIS VAL ARG GLN TRP LEU SEQRES 4 A 97 GLU TRP ALA VAL LYS GLU TYR GLY LEU PRO ASP VAL ASN SEQRES 5 A 97 ILE LEU LEU PHE GLN ASN ILE ASP GLY LYS GLU LEU CYS SEQRES 6 A 97 LYS MET THR LYS ASP ASP PHE GLN ARG LEU THR PRO SER SEQRES 7 A 97 TYR ASN ALA ASP ILE LEU LEU SER HIS LEU HIS TYR LEU SEQRES 8 A 97 ARG GLU THR PRO LEU PRO HELIX 1 1 MET A 108 MET A 113 5 6 HELIX 2 2 SER A 135 GLY A 151 1 17 HELIX 3 3 ASN A 156 PHE A 160 5 5 HELIX 4 4 ASP A 164 CYS A 169 1 6 HELIX 5 5 THR A 172 GLN A 177 1 6 HELIX 6 6 PRO A 181 ARG A 196 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000