PDB Short entry for 1SZM HEADER TRANSFERASE 06-APR-04 1SZM TITLE DUAL BINDING MODE OF BISINDOLYLMALEIMIDE 2 TO PROTEIN KINASE A (PKA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PKA C-ALPHA, PROTEIN KINASE A; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS PKA, PKC, BISINDOLYL MALEIMIDE 2, LY333531, SELECTIVITY, SURROGATE KEYWDS 2 KINASE, AMINO ACID RESIDUE EXCHANGE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GASSEL,C.B.BREITENLECHNER,N.KOENIG,R.HUBER,R.A.ENGH,D.BOSSEMEYER REVDAT 5 23-AUG-23 1SZM 1 REMARK REVDAT 4 27-OCT-21 1SZM 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1SZM 1 VERSN REVDAT 2 15-JUN-04 1SZM 1 REMARK REVDAT 1 01-JUN-04 1SZM 0 JRNL AUTH M.GASSEL,C.B.BREITENLECHNER,N.KOENIG,R.HUBER,R.A.ENGH, JRNL AUTH 2 D.BOSSEMEYER JRNL TITL THE PROTEIN KINASE C INHIBITOR BISINDOLYL MALEIMIDE 2 BINDS JRNL TITL 2 WITH REVERSED ORIENTATIONS TO DIFFERENT CONFORMATIONS OF JRNL TITL 3 PROTEIN KINASE A. JRNL REF J.BIOL.CHEM. V. 279 23679 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14996846 JRNL DOI 10.1074/JBC.M314082200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.PRADE,R.A.ENGH,A.GIROD,V.KINZEL,R.HUBER,D.BOSSEMEYER REMARK 1 TITL STAUROSPORINE-INDUCED CONFORMATIONAL CHANGES OF REMARK 1 TITL 2 CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT EXPLAIN REMARK 1 TITL 3 INHIBITORY POTENTIAL. REMARK 1 REF STRUCTURE V. 5 1627 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9438863 REMARK 1 DOI 10.1016/S0969-2126(97)00310-9 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2047 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.505 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.441 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5391 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4785 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7309 ; 1.546 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11082 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 6.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 762 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5941 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1144 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1129 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5439 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3069 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3191 ; 0.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5116 ; 1.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 1.884 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2193 ; 3.069 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELIHOOD REMARK 4 REMARK 4 1SZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0500 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (MOLREP) REMARK 200 STARTING MODEL: PDB ENTRY 1STC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LICL, MESBISTRIS, METHANOL, MEGA-8, REMARK 280 PKI(5-24), PH 6.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.03250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.50250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.03250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.50250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 465 GLU A 13 REMARK 465 SER A 14 REMARK 465 LYS A 317 REMARK 465 PHE A 318 REMARK 465 LYS A 319 REMARK 465 GLY A 320 REMARK 465 PRO A 321 REMARK 465 GLY A 322 REMARK 465 ASP A 323 REMARK 465 THR A 324 REMARK 465 SER A 325 REMARK 465 ASN A 326 REMARK 465 PHE A 327 REMARK 465 ASP A 328 REMARK 465 ASP A 329 REMARK 465 TYR A 330 REMARK 465 GLU A 331 REMARK 465 GLU A 332 REMARK 465 GLY B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 GLN B 12 REMARK 465 GLU B 13 REMARK 465 LYS B 317 REMARK 465 PHE B 318 REMARK 465 LYS B 319 REMARK 465 GLY B 320 REMARK 465 PRO B 321 REMARK 465 GLY B 322 REMARK 465 ASP B 323 REMARK 465 THR B 324 REMARK 465 SER B 325 REMARK 465 ASN B 326 REMARK 465 PHE B 327 REMARK 465 ASP B 328 REMARK 465 ASP B 329 REMARK 465 TYR B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 23 NZ REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 64 CB CG CD OE1 OE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 ARG A 133 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 249 NZ REMARK 470 VAL A 251 CB CG1 CG2 REMARK 470 SER A 252 CB OG REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 264 CG OD1 OD2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 VAL A 275 CB CG1 CG2 REMARK 470 LYS A 279 CB CG CD CE NZ REMARK 470 LYS A 285 CB CG CD CE NZ REMARK 470 ILE A 291 CB CG1 CG2 CD1 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 GLU B 17 CD OE1 OE2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 470 LYS B 78 CD CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 105 CD CE NZ REMARK 470 ARG B 133 C CG CD NE CZ NH1 NH2 REMARK 470 ARG B 134 CZ NH1 NH2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 GLU B 248 CB CG CD OE1 OE2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 256 CD NE CZ NH1 NH2 REMARK 470 LYS B 266 CE NZ REMARK 470 LYS B 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 112 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 25 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 75 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET B 173 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP B 184 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 32.53 -78.85 REMARK 500 ALA A 38 -179.10 179.22 REMARK 500 ILE A 46 -69.80 -94.11 REMARK 500 THR A 65 -31.82 -154.13 REMARK 500 SEP A 139 159.94 -48.71 REMARK 500 ASP A 184 99.61 65.17 REMARK 500 LYS A 217 -36.08 -30.58 REMARK 500 HIS A 260 3.44 -66.16 REMARK 500 LEU A 273 46.95 -85.89 REMARK 500 ASN A 283 79.84 -117.85 REMARK 500 THR A 299 45.81 -92.76 REMARK 500 ARG A 308 21.06 87.29 REMARK 500 ASN B 36 69.32 37.81 REMARK 500 ASN B 99 108.70 -168.47 REMARK 500 ALA B 123 80.06 -155.69 REMARK 500 HIS B 131 15.29 -68.55 REMARK 500 LEU B 132 -40.43 -135.78 REMARK 500 ARG B 165 37.49 31.90 REMARK 500 ASP B 166 25.29 -144.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 ATOM NAMES USED FOR BIM2 IN THIS ENTRY WERE CHOSEN REMARK 600 TO COMPLY WITH PDB ENTRY 1UU3. THEY CORRESPOND TO REMARK 600 ATOM NAMES USED IN THE ORIGINAL CITATION AND REMARK 600 REFERENCE 1 IN THE FOLLOWING MANNER: REMARK 600 CAA=C3, CAB=C2, CAC=C1, CAD=C23, CAE=C5, CAF=C4, REMARK 600 CAG=C22, NAH=N6, CAI=C21, CAJ=C17, CAK=C16, CAL=C8, REMARK 600 CAM=C15, CAN=C10, NAO=N9, CAP=C14, CAQ=C13, CAR=C12, REMARK 600 CAS=C11, CAT=C20, NAU=N19, CAV=C18, CAW=C7, OAX=O32, REMARK 600 CAY=C24 , OAZ=O33, CBA=C25, CBB=C26, NBC=N30, CBD=C31, REMARK 600 CBE=C27, CBF=C28, CBG=C29, REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BI4 A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BI4 B 351 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1STC RELATED DB: PDB REMARK 900 CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT IN COMPLEX REMARK 900 WITH STAUROSPORINE DBREF 1SZM A 1 350 UNP P00517 KAPCA_BOVIN 1 350 DBREF 1SZM B 1 350 UNP P00517 KAPCA_BOVIN 1 350 SEQADV 1SZM ALA A 123 UNP P00517 VAL 123 ENGINEERED MUTATION SEQADV 1SZM SEP A 139 UNP P00517 SER 139 MODIFIED RESIDUE SEQADV 1SZM MET A 173 UNP P00517 LEU 173 ENGINEERED MUTATION SEQADV 1SZM LYS A 181 UNP P00517 GLN 181 ENGINEERED MUTATION SEQADV 1SZM TPO A 197 UNP P00517 THR 197 MODIFIED RESIDUE SEQADV 1SZM SEP A 338 UNP P00517 SER 338 MODIFIED RESIDUE SEQADV 1SZM ALA B 123 UNP P00517 VAL 123 ENGINEERED MUTATION SEQADV 1SZM SEP B 139 UNP P00517 SER 139 MODIFIED RESIDUE SEQADV 1SZM MET B 173 UNP P00517 LEU 173 ENGINEERED MUTATION SEQADV 1SZM LYS B 181 UNP P00517 GLN 181 ENGINEERED MUTATION SEQADV 1SZM TPO B 197 UNP P00517 THR 197 MODIFIED RESIDUE SEQADV 1SZM SEP B 338 UNP P00517 SER 338 MODIFIED RESIDUE SEQRES 1 A 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 A 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 A 350 LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA HIS SEQRES 4 A 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 A 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS MET GLU THR SEQRES 6 A 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 A 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 A 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 A 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 A 350 MET VAL MET GLU TYR ALA PRO GLY GLY GLU MET PHE SER SEQRES 11 A 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 A 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 A 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 A 350 GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS VAL SEQRES 15 A 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 A 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 A 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 A 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 A 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 A 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 A 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 A 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 A 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 A 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 A 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 A 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 A 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 B 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 B 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 B 350 LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA HIS SEQRES 4 B 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 B 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS MET GLU THR SEQRES 6 B 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 B 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 B 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 B 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 B 350 MET VAL MET GLU TYR ALA PRO GLY GLY GLU MET PHE SER SEQRES 11 B 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 B 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 B 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 B 350 GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS VAL SEQRES 15 B 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 B 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 B 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 B 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 B 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 B 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 B 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 B 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 B 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 B 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 B 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 B 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 B 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE MODRES 1SZM SEP A 139 SER PHOSPHOSERINE MODRES 1SZM TPO A 197 THR PHOSPHOTHREONINE MODRES 1SZM SEP A 338 SER PHOSPHOSERINE MODRES 1SZM SEP B 139 SER PHOSPHOSERINE MODRES 1SZM TPO B 197 THR PHOSPHOTHREONINE MODRES 1SZM SEP B 338 SER PHOSPHOSERINE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET SEP B 139 10 HET TPO B 197 11 HET SEP B 338 10 HET BI4 A 351 33 HET BI4 B 351 33 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM BI4 3-(1H-INDOL-3-YL)-4-{1-[2-(1-METHYLPYRROLIDIN-2-YL) HETNAM 2 BI4 ETHYL]-1H-INDOL-3-YL}-1H-PYRROLE-2,5-DIONE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 4(C3 H8 N O6 P) FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 BI4 2(C27 H26 N4 O2) FORMUL 5 HOH *79(H2 O) HELIX 1 1 LYS A 16 ASN A 32 1 17 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SEP A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 ALA A 218 GLY A 234 1 17 HELIX 11 11 GLN A 242 GLY A 253 1 12 HELIX 12 12 SER A 262 ASP A 267 1 6 HELIX 13 13 ASP A 267 LEU A 273 1 7 HELIX 14 14 VAL A 288 ASN A 293 1 6 HELIX 15 15 HIS A 294 ALA A 298 5 5 HELIX 16 16 SER B 14 ASN B 32 1 19 HELIX 17 17 HIS B 39 ASP B 41 5 3 HELIX 18 18 LYS B 76 LEU B 82 1 7 HELIX 19 19 GLN B 84 GLN B 96 1 13 HELIX 20 20 SEP B 139 LEU B 160 1 22 HELIX 21 21 LYS B 168 GLU B 170 5 3 HELIX 22 22 THR B 201 LEU B 205 5 5 HELIX 23 23 ALA B 206 LEU B 211 1 6 HELIX 24 24 ALA B 218 GLY B 234 1 17 HELIX 25 25 GLN B 242 GLY B 253 1 12 HELIX 26 26 SER B 262 LEU B 273 1 12 HELIX 27 27 VAL B 288 ASN B 293 1 6 HELIX 28 28 HIS B 294 ALA B 298 5 5 HELIX 29 29 ASP B 301 GLN B 307 1 7 HELIX 30 30 GLY B 344 SER B 348 5 5 SHEET 1 A 5 PHE A 43 GLY A 52 0 SHEET 2 A 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 A 5 HIS A 68 ASP A 75 -1 O ILE A 73 N ARG A 56 SHEET 4 A 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 A 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 B 2 LEU A 162 ILE A 163 0 SHEET 2 B 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 C 2 LEU A 172 ILE A 174 0 SHEET 2 C 2 ILE A 180 VAL A 182 -1 O LYS A 181 N MET A 173 SHEET 1 D 5 PHE B 43 GLY B 52 0 SHEET 2 D 5 GLY B 55 HIS B 62 -1 O VAL B 57 N LEU B 49 SHEET 3 D 5 HIS B 68 ASP B 75 -1 O MET B 71 N MET B 58 SHEET 4 D 5 ASN B 115 GLU B 121 -1 O MET B 120 N ALA B 70 SHEET 5 D 5 LEU B 106 LYS B 111 -1 N PHE B 108 O VAL B 119 SHEET 1 E 3 GLY B 125 GLU B 127 0 SHEET 2 E 3 LEU B 172 ASP B 175 -1 O ILE B 174 N GLY B 126 SHEET 3 E 3 ILE B 180 VAL B 182 -1 O LYS B 181 N MET B 173 SHEET 1 F 2 LEU B 162 ILE B 163 0 SHEET 2 F 2 LYS B 189 ARG B 190 -1 O LYS B 189 N ILE B 163 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.34 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK C PHE B 138 N SEP B 139 1555 1555 1.33 LINK C SEP B 139 N GLU B 140 1555 1555 1.33 LINK C TRP B 196 N TPO B 197 1555 1555 1.33 LINK C TPO B 197 N LEU B 198 1555 1555 1.33 LINK C VAL B 337 N SEP B 338 1555 1555 1.33 LINK C SEP B 338 N ILE B 339 1555 1555 1.34 SITE 1 AC1 13 LEU A 49 PHE A 54 ALA A 70 VAL A 104 SITE 2 AC1 13 MET A 120 GLU A 121 TYR A 122 ALA A 123 SITE 3 AC1 13 GLU A 170 ASN A 171 MET A 173 THR A 183 SITE 4 AC1 13 ASP A 184 SITE 1 AC2 10 LEU B 49 THR B 51 VAL B 57 ALA B 70 SITE 2 AC2 10 MET B 120 GLU B 121 TYR B 122 ALA B 123 SITE 3 AC2 10 PRO B 124 GLY B 125 CRYST1 82.065 89.005 116.388 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008592 0.00000