PDB Short entry for 1T1M
HEADER    RIBOSOME                                16-APR-04   1T1M              
TITLE     BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S
TITLE    2 RIBOSOME                                                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DODECAMER FRAGMENT OF DOUBLE HELIX FROM 23S RRNA;          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: APICAL LOOP OF HELIX 43;                                   
COMPND   5 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME;      
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: 42-MER FRAGMENT OF DOUBLE HELIX FROM 16S RRNA;             
COMPND   8 CHAIN: B;                                                            
COMPND   9 FRAGMENT: TOP PORTION OF HELIX 44;                                   
COMPND  10 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME;      
COMPND  11 MOL_ID: 3;                                                           
COMPND  12 MOLECULE: RIBOSOME RECYCLING FACTOR;                                 
COMPND  13 CHAIN: C;                                                            
COMPND  14 SYNONYM: RIBOSOME RELEASING FACTOR; RRF;                             
COMPND  15 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME       
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 562;                                                 
SOURCE   4 STRAIN: MRE600;                                                      
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   7 ORGANISM_TAXID: 562;                                                 
SOURCE   8 STRAIN: MRE600;                                                      
SOURCE   9 MOL_ID: 3;                                                           
SOURCE  10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE  11 ORGANISM_TAXID: 562;                                                 
SOURCE  12 STRAIN: MRE600;                                                      
SOURCE  13 OTHER_DETAILS: SEQUENCE TAKEN FROM THERMOTOGA MARITIMA               
KEYWDS    RRF BINDING POSITION ON THE RIBOSOME, RIBOSOME                        
EXPDTA    ELECTRON MICROSCOPY                                                   
MDLTYP    CA ATOMS ONLY, CHAIN C; P ATOMS ONLY, CHAIN A, B                      
AUTHOR    R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH,C.M.SPAHN,       
AUTHOR   2 R.A.GRASSUCCI,A.KAJI,J.FRANK                                         
REVDAT   3   14-FEB-24 1T1M    1       REMARK                                   
REVDAT   2   24-FEB-09 1T1M    1       VERSN                                    
REVDAT   1   15-JUN-04 1T1M    0                                                
JRNL        AUTH   R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH,        
JRNL        AUTH 2 C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK                       
JRNL        TITL   VISUALIZATION OF RIBOSOME-RECYCLING FACTOR ON THE            
JRNL        TITL 2 ESCHERICHIA COLI 70S RIBOSOME: FUNCTIONAL IMPLICATIONS       
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 101  8900 2004              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   15178758                                                     
JRNL        DOI    10.1073/PNAS.0401904101                                      
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   J.HARMS,F.SCHLUENZEN,R.ZARIVACH,A.BASHAN,S.GAT,I.AGMON,      
REMARK   1  AUTH 2 H.BARTELS,F.FRANCESCHI,A.YONATH                              
REMARK   1  TITL   HIGH RESOLUTION STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT     
REMARK   1  TITL 2 FROM A MESOPHILIC EUBACTERIUM                                
REMARK   1  REF    CELL(CAMBRIDGE,MASS.)         V. 107   679 2001              
REMARK   1  REFN                   ISSN 0092-8674                               
REMARK   1  PMID   11733066                                                     
REMARK   1  DOI    10.1016/S0092-8674(01)00546-3                                
REMARK   1 REFERENCE 2                                                          
REMARK   1  AUTH   B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR.,                  
REMARK   1  AUTH 2 R.J.MORGAN-WARREN,A.P.CARTER,C.VONRHEIN,T.HARTSCH,           
REMARK   1  AUTH 3 V.RAMAKRISHNAN                                               
REMARK   1  TITL   STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT                       
REMARK   1  REF    NATURE                        V. 407   327 2000              
REMARK   1  REFN                   ISSN 0028-0836                               
REMARK   1  PMID   11014182                                                     
REMARK   1  DOI    10.1038/35030006                                             
REMARK   1 REFERENCE 3                                                          
REMARK   1  AUTH   M.SELMER,S.AL-KARADAGHI,G.HIROKAWA,A.KAJI,A.LILJAS           
REMARK   1  TITL   CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING  
REMARK   1  TITL 2 FACTOR: A TRNA MIMIC                                         
REMARK   1  REF    SCIENCE                       V. 286  2349 1999              
REMARK   1  REFN                   ISSN 0036-8075                               
REMARK   1 REFERENCE 4                                                          
REMARK   1  AUTH   K.K.KIM,K.MIN,S.W.SUH                                        
REMARK   1  TITL   CRYSTAL STRUCTURE OF THE RIBOSOME RECYCLING FACTOR FROM      
REMARK   1  TITL 2 ESCHERICHIA COLI                                             
REMARK   1  REF    EMBO J.                       V.  19  2362 2000              
REMARK   1  REFN                   ISSN 0261-4189                               
REMARK   2                                                                      
REMARK   2 RESOLUTION.   12.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : NULL                                      
REMARK   3   RECONSTRUCTION SCHEMA  : NULL                                      
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : 1KC9                                
REMARK   3   REFINEMENT SPACE             : NULL                                
REMARK   3   REFINEMENT PROTOCOL          : OTHER                               
REMARK   3   REFINEMENT TARGET            : NULL                                
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : METHOD--CROSS CORELATION COEFFICIENT BASED       
REMARK   3  MANUAL FITTING IN O                                                 
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : NULL                           
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 12.00                          
REMARK   3   NUMBER OF PARTICLES               : 51217                          
REMARK   3   CTF CORRECTION METHOD             : NULL                           
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV                     
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: SPIDER PACKAGE                                        
REMARK   4                                                                      
REMARK   4 1T1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000022198.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : SINGLE PARTICLE                   
REMARK 245   SPECIMEN TYPE                  : VITREOUS ICE (CRYO EM)            
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : PARTICLE                          
REMARK 245   PARTICLE TYPE                  : POINT                             
REMARK 245   NAME OF SAMPLE                 : 70S-RRF COMPLEX                   
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : 32.00                             
REMARK 245   SAMPLE SUPPORT DETAILS         : QUANTIFOIL HOLLEY-CARBON FILM     
REMARK 245                                    GRIDS                             
REMARK 245   SAMPLE VITRIFICATION DETAILS   : RAPID-FREEZING IN LIQUID ETHANE   
REMARK 245   SAMPLE BUFFER                  : NULL                              
REMARK 245   PH                             : 7.50                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : 01-JUN-02                      
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : NULL                           
REMARK 245   TEMPERATURE (KELVIN)              : 93.00                          
REMARK 245   MICROSCOPE MODEL                  : FEI TECNAI F20                 
REMARK 245   DETECTOR TYPE                     : KODAK SO-163 FILM              
REMARK 245   MINIMUM DEFOCUS (NM)              : 1400.00                        
REMARK 245   MAXIMUM DEFOCUS (NM)              : 4400.00                        
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   NOMINAL CS                        : 2.00                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 2000.00                        
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : 50000                          
REMARK 245   CALIBRATED MAGNIFICATION          : 49696                          
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 200                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET C     0                                                      
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1KC9   RELATED DB: PDB                                   
REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM   
REMARK 900 D. RADIODURANS                                                       
REMARK 900 RELATED ID: 1FJF   RELATED DB: PDB                                   
REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM   
REMARK 900 T. THERMOPHILUS                                                      
REMARK 900 RELATED ID: 1DD5   RELATED DB: PDB                                   
REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF RRF FROM THERMOTOGA MARITIMA     
REMARK 900 RELATED ID: 1EK8   RELATED DB: PDB                                   
REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF RRF FROM E. COLI                 
REMARK 900 RELATED ID: 1T1O   RELATED DB: PDB                                   
REMARK 900 RELATED ID: EMD-1077   RELATED DB: EMDB                              
DBREF  1T1M C    0   184  UNP    P84154   P84154_ECOLI     1    185             
DBREF  1T1M A 1061  1072  PDB    1T1M     1T1M          1061   1072             
DBREF  1T1M B 1401  1501  PDB    1T1M     1T1M          1401   1501             
SEQRES   1 A   12    U   G   G   C   U   U   A   G   A   A   G   C              
SEQRES   1 B   42    G   C   C   C   G   U   C   A   C   A   C   C   A          
SEQRES   2 B   42    U   G   G   G   A   G   U   A   U   G   A   C   U          
SEQRES   3 B   42    G   G   G   G   U   G   A   A   G   U   C   G   U          
SEQRES   4 B   42    A   A   C                                                  
SEQRES   1 C  185  MET VAL ASN PRO PHE ILE LYS GLU ALA LYS GLU LYS MET          
SEQRES   2 C  185  LYS ARG THR LEU GLU LYS ILE GLU ASP GLU LEU ARG LYS          
SEQRES   3 C  185  MET ARG THR GLY LYS PRO SER PRO ALA ILE LEU GLU GLU          
SEQRES   4 C  185  ILE LYS VAL ASP TYR TYR GLY VAL PRO THR PRO VAL ASN          
SEQRES   5 C  185  GLN LEU ALA THR ILE SER ILE SER GLU GLU ARG THR LEU          
SEQRES   6 C  185  VAL ILE LYS PRO TRP ASP LYS SER VAL LEU SER LEU ILE          
SEQRES   7 C  185  GLU LYS ALA ILE ASN ALA SER ASP LEU GLY LEU ASN PRO          
SEQRES   8 C  185  ILE ASN ASP GLY ASN VAL ILE ARG LEU VAL PHE PRO SER          
SEQRES   9 C  185  PRO THR THR GLU GLN ARG GLU LYS TRP VAL LYS LYS ALA          
SEQRES  10 C  185  LYS GLU ILE VAL GLU GLU GLY LYS ILE ALA ILE ARG ASN          
SEQRES  11 C  185  ILE ARG ARG GLU ILE LEU LYS LYS ILE LYS GLU ASP GLN          
SEQRES  12 C  185  LYS GLU GLY LEU ILE PRO GLU ASP ASP ALA LYS ARG LEU          
SEQRES  13 C  185  GLU ASN GLU ILE GLN LYS LEU THR ASP GLU PHE ILE GLU          
SEQRES  14 C  185  LYS LEU ASP GLU VAL PHE GLU ILE LYS LYS GLU GLU ILE          
SEQRES  15 C  185  MET GLU PHE                                                  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000