PDB Short entry for 1TBW HEADER CHAPERONE 20-MAY-04 1TBW TITLE LIGAND INDUCED CONFORMATIONAL SHIFT IN THE N-TERMINAL DOMAIN OF GRP94, TITLE 2 OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF GRP94 RESIDUES 69-337, 287-327 DELETED COMPND 5 AND REPLACED WITH 4 GLYCINES; COMPND 6 SYNONYM: 94 KDA GLUCOSE-REGULATED PROTEIN, GRP94; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 STRAIN: FAMILIARIS; SOURCE 6 GENE: TRA1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-NB-GRP94 (69-337DELTA41) KEYWDS GRP94, HSP90, AMP, BERGRAT, CHAPERONE, ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR D.T.GEWIRTH,R.M.IMMORMINO,D.E.DOLLINS,P.L.SHAFFER,M.A.WALKER, AUTHOR 2 K.L.SOLDANO REVDAT 5 14-FEB-24 1TBW 1 REMARK SEQADV LINK REVDAT 4 09-AUG-17 1TBW 1 SOURCE REVDAT 3 24-FEB-09 1TBW 1 VERSN REVDAT 2 02-NOV-04 1TBW 1 JRNL REVDAT 1 24-AUG-04 1TBW 0 JRNL AUTH R.M.IMMORMINO,D.E.DOLLINS,P.L.SHAFFER,K.L.SOLDANO, JRNL AUTH 2 M.A.WALKER,D.T.GEWIRTH JRNL TITL LIGAND-INDUCED CONFORMATIONAL SHIFT IN THE N-TERMINAL DOMAIN JRNL TITL 2 OF GRP94, AN HSP90 CHAPERONE. JRNL REF J.BIOL.CHEM. V. 279 46162 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15292259 JRNL DOI 10.1074/JBC.M405253200 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 436206.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 27410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2667 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3792 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 356 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 2.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.120 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.960 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 73.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : AMP.PARAM REMARK 3 PARAMETER FILE 4 : PEG.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : AMP.TOP REMARK 3 TOPOLOGY FILE 4 : PEG.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.00995 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, MGCL, TRIS, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 80.10100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.24633 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.52133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 80.10100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.24633 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.52133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 80.10100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.24633 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.52133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 80.10100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 46.24633 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.52133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 80.10100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 46.24633 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.52133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 80.10100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 46.24633 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.52133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.49267 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.04267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 92.49267 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.04267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 92.49267 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.04267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 92.49267 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.04267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 92.49267 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 73.04267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 92.49267 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 73.04267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 858 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 881 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 65 REMARK 465 SER A 66 REMARK 465 HIS A 67 REMARK 465 MET A 68 REMARK 465 LEU A 69 REMARK 465 ARG A 70 REMARK 465 GLU A 71 REMARK 465 LYS A 72 REMARK 465 SER A 73 REMARK 465 GLU A 74 REMARK 465 LYS A 75 REMARK 465 GLY A 287 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 HIS B 67 REMARK 465 MET B 68 REMARK 465 LEU B 69 REMARK 465 ARG B 70 REMARK 465 GLU B 71 REMARK 465 LYS B 72 REMARK 465 SER B 73 REMARK 465 GLU B 74 REMARK 465 LYS B 75 REMARK 465 PHE B 76 REMARK 465 ALA B 77 REMARK 465 PHE B 78 REMARK 465 GLY B 164 REMARK 465 THR B 165 REMARK 465 ILE B 166 REMARK 465 ALA B 167 REMARK 465 LYS B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 THR B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 PHE B 174 REMARK 465 LEU B 175 REMARK 465 ASN B 176 REMARK 465 LYS B 177 REMARK 465 MET B 178 REMARK 465 THR B 179 REMARK 465 GLU B 180 REMARK 465 ALA B 181 REMARK 465 GLN B 182 REMARK 465 GLU B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 GLN B 186 REMARK 465 THR B 286 REMARK 465 GLY B 287 REMARK 465 GLY B 288 REMARK 465 GLY B 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 76 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASN A 96 CG OD1 ND2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 SER A 169 OG REMARK 470 SER A 172 OG REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LEU A 175 CG CD1 CD2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 SER A 256 OG REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 ASN B 83 CG OD1 ND2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ILE B 90 CG1 CG2 CD1 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 SER B 187 OG REMARK 470 THR B 188 OG1 CG2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 ASN B 228 CG OD1 ND2 REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 SER B 256 OG REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 77.41 -114.98 REMARK 500 GLU A 98 -18.50 -45.68 REMARK 500 ASN A 129 112.19 -174.93 REMARK 500 ARG A 243 137.48 -171.63 REMARK 500 TYR A 258 27.18 -69.20 REMARK 500 LYS A 328 -169.75 -66.04 REMARK 500 ILE B 99 0.35 -58.64 REMARK 500 GLU B 130 39.06 -78.68 REMARK 500 THR B 150 44.53 -102.49 REMARK 500 TYR B 200 -8.49 -58.88 REMARK 500 PHE B 203 0.19 -65.54 REMARK 500 SER B 227 -21.60 94.26 REMARK 500 ARG B 243 140.46 -176.74 REMARK 500 TYR B 258 11.35 -68.79 REMARK 500 THR B 329 70.06 36.67 REMARK 500 ASP B 332 -173.22 -173.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 ONLY FRAGMENTS OF PEG400 (PG4) WERE IDENTIFIED AND IN REMARK 600 MANY CASES SEVERAL ATOMS WERE MISSING DUE TO LACK OF REMARK 600 ELECTRON DENSITY. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 401 REMARK 610 PG4 A 403 REMARK 610 PG4 B 402 REMARK 610 PG4 B 701 REMARK 610 PG4 B 702 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 107 OD1 REMARK 620 2 AMP A 301 O2P 81.8 REMARK 620 3 HOH A 502 O 89.8 91.7 REMARK 620 4 HOH A 519 O 85.0 87.2 174.7 REMARK 620 5 HOH A 522 O 172.6 92.7 95.4 89.8 REMARK 620 6 HOH A 526 O 84.1 165.7 90.4 89.5 101.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 107 OD1 REMARK 620 2 AMP B 601 O2P 77.1 REMARK 620 3 HOH B 819 O 86.2 101.1 REMARK 620 4 HOH B 847 O 138.6 72.8 126.7 REMARK 620 5 HOH B 882 O 74.7 139.4 105.5 112.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-DOMAIN OF THE ER HSP90 CHAPERONE GRP94 REMARK 900 IN COMPLEX WITH THE SPECIFIC LIGAND NECA REMARK 900 RELATED ID: 1QY8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-DOMAIN OF THE ER HSP90 CHAPERONE GRP94 REMARK 900 IN COMPLEX WITH RADICICOL REMARK 900 RELATED ID: 1QYE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-DOMAIN OF THE ER HSP90 CHAPERONE GRP94 REMARK 900 IN COMPLEX WITH RADICICOL REMARK 900 RELATED ID: 1QYH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-DOMAIN OF GRP94 LACKING THE CHARGED REMARK 900 DOMAIN IN COMPLEX WITH NECA REMARK 900 RELATED ID: 1TC0 RELATED DB: PDB REMARK 900 LIGAND INDUCED CONFORMATIONAL SHIFTS IN THE N-TERMINAL DOMAIN OF REMARK 900 GRP94. OPEN CONFORMATION COMPLEXED WITH THE PHYSIOLOGICAL PARTNER REMARK 900 ATP. REMARK 900 RELATED ID: 1TC6 RELATED DB: PDB REMARK 900 LIGAND INDUCED CONFORMATIONAL SHIFT IN THE N-TERMINAL DOMAIN OF REMARK 900 GRP94. OPEN CONFORMATION ADP-COMPLEX. REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DATABASE RESIDUES 287-327 WERE DELETED REMARK 999 AND REPLACED BY 4 GLYCINES. DBREF 1TBW A 69 286 UNP P41148 ENPL_CANFA 69 286 DBREF 1TBW A 328 337 UNP P41148 ENPL_CANFA 328 337 DBREF 1TBW B 69 286 UNP P41148 ENPL_CANFA 69 286 DBREF 1TBW B 328 337 UNP P41148 ENPL_CANFA 328 337 SEQADV 1TBW GLY A 65 UNP P41148 CLONING ARTIFACT SEQADV 1TBW SER A 66 UNP P41148 CLONING ARTIFACT SEQADV 1TBW HIS A 67 UNP P41148 CLONING ARTIFACT SEQADV 1TBW MET A 68 UNP P41148 CLONING ARTIFACT SEQADV 1TBW GLY A 287 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY A 288 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY A 289 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY A 290 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY B 65 UNP P41148 CLONING ARTIFACT SEQADV 1TBW SER B 66 UNP P41148 CLONING ARTIFACT SEQADV 1TBW HIS B 67 UNP P41148 CLONING ARTIFACT SEQADV 1TBW MET B 68 UNP P41148 CLONING ARTIFACT SEQADV 1TBW GLY B 287 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY B 288 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY B 289 UNP P41148 SEE REMARK 999 SEQADV 1TBW GLY B 290 UNP P41148 SEE REMARK 999 SEQRES 1 A 236 GLY SER HIS MET LEU ARG GLU LYS SER GLU LYS PHE ALA SEQRES 2 A 236 PHE GLN ALA GLU VAL ASN ARG MET MET LYS LEU ILE ILE SEQRES 3 A 236 ASN SER LEU TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU SEQRES 4 A 236 LEU ILE SER ASN ALA SER ASP ALA LEU ASP LYS ILE ARG SEQRES 5 A 236 LEU ILE SER LEU THR ASP GLU ASN ALA LEU ALA GLY ASN SEQRES 6 A 236 GLU GLU LEU THR VAL LYS ILE LYS CYS ASP LYS GLU LYS SEQRES 7 A 236 ASN LEU LEU HIS VAL THR ASP THR GLY VAL GLY MET THR SEQRES 8 A 236 ARG GLU GLU LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SEQRES 9 A 236 SER GLY THR SER GLU PHE LEU ASN LYS MET THR GLU ALA SEQRES 10 A 236 GLN GLU ASP GLY GLN SER THR SER GLU LEU ILE GLY GLN SEQRES 11 A 236 PHE GLY VAL GLY PHE TYR SER ALA PHE LEU VAL ALA ASP SEQRES 12 A 236 LYS VAL ILE VAL THR SER LYS HIS ASN ASN ASP THR GLN SEQRES 13 A 236 HIS ILE TRP GLU SER ASP SER ASN GLU PHE SER VAL ILE SEQRES 14 A 236 ALA ASP PRO ARG GLY ASN THR LEU GLY ARG GLY THR THR SEQRES 15 A 236 ILE THR LEU VAL LEU LYS GLU GLU ALA SER ASP TYR LEU SEQRES 16 A 236 GLU LEU ASP THR ILE LYS ASN LEU VAL LYS LYS TYR SER SEQRES 17 A 236 GLN PHE ILE ASN PHE PRO ILE TYR VAL TRP SER SER LYS SEQRES 18 A 236 THR GLY GLY GLY GLY LYS THR VAL TRP ASP TRP GLU LEU SEQRES 19 A 236 MET ASN SEQRES 1 B 236 GLY SER HIS MET LEU ARG GLU LYS SER GLU LYS PHE ALA SEQRES 2 B 236 PHE GLN ALA GLU VAL ASN ARG MET MET LYS LEU ILE ILE SEQRES 3 B 236 ASN SER LEU TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU SEQRES 4 B 236 LEU ILE SER ASN ALA SER ASP ALA LEU ASP LYS ILE ARG SEQRES 5 B 236 LEU ILE SER LEU THR ASP GLU ASN ALA LEU ALA GLY ASN SEQRES 6 B 236 GLU GLU LEU THR VAL LYS ILE LYS CYS ASP LYS GLU LYS SEQRES 7 B 236 ASN LEU LEU HIS VAL THR ASP THR GLY VAL GLY MET THR SEQRES 8 B 236 ARG GLU GLU LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SEQRES 9 B 236 SER GLY THR SER GLU PHE LEU ASN LYS MET THR GLU ALA SEQRES 10 B 236 GLN GLU ASP GLY GLN SER THR SER GLU LEU ILE GLY GLN SEQRES 11 B 236 PHE GLY VAL GLY PHE TYR SER ALA PHE LEU VAL ALA ASP SEQRES 12 B 236 LYS VAL ILE VAL THR SER LYS HIS ASN ASN ASP THR GLN SEQRES 13 B 236 HIS ILE TRP GLU SER ASP SER ASN GLU PHE SER VAL ILE SEQRES 14 B 236 ALA ASP PRO ARG GLY ASN THR LEU GLY ARG GLY THR THR SEQRES 15 B 236 ILE THR LEU VAL LEU LYS GLU GLU ALA SER ASP TYR LEU SEQRES 16 B 236 GLU LEU ASP THR ILE LYS ASN LEU VAL LYS LYS TYR SER SEQRES 17 B 236 GLN PHE ILE ASN PHE PRO ILE TYR VAL TRP SER SER LYS SEQRES 18 B 236 THR GLY GLY GLY GLY LYS THR VAL TRP ASP TRP GLU LEU SEQRES 19 B 236 MET ASN HET MG A 501 1 HET AMP A 301 23 HET PG4 A 401 6 HET PG4 A 403 6 HET MG B 802 1 HET PG4 B 402 6 HET AMP B 601 23 HET PG4 B 701 5 HET PG4 B 702 5 HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 5 PG4 5(C8 H18 O5) FORMUL 12 HOH *231(H2 O) HELIX 1 1 PHE A 76 LEU A 93 1 18 HELIX 2 2 GLU A 98 LEU A 120 1 23 HELIX 3 3 THR A 121 ALA A 127 5 7 HELIX 4 4 THR A 155 LEU A 163 1 9 HELIX 5 5 GLY A 170 ASP A 184 1 15 HELIX 6 6 SER A 187 GLN A 194 1 8 HELIX 7 7 PHE A 195 VAL A 197 5 3 HELIX 8 8 GLY A 198 LEU A 204 5 7 HELIX 9 9 GLU A 253 LEU A 259 5 7 HELIX 10 10 GLU A 260 SER A 272 1 13 HELIX 11 11 GLN B 79 LEU B 93 1 15 HELIX 12 12 GLU B 98 LEU B 120 1 23 HELIX 13 13 THR B 155 LEU B 163 1 9 HELIX 14 14 SER B 187 GLY B 196 1 10 HELIX 15 15 GLY B 198 LEU B 204 5 7 HELIX 16 16 GLU B 253 LEU B 259 5 7 HELIX 17 17 GLU B 260 TYR B 271 1 12 SHEET 1 A 8 PHE A 230 ALA A 234 0 SHEET 2 A 8 HIS A 221 SER A 225 -1 N ILE A 222 O ILE A 233 SHEET 3 A 8 ALA A 206 LYS A 214 -1 N VAL A 211 O TRP A 223 SHEET 4 A 8 GLY A 244 LEU A 251 -1 O THR A 248 N ILE A 210 SHEET 5 A 8 LEU A 144 ASP A 149 -1 N ASP A 149 O THR A 245 SHEET 6 A 8 VAL A 134 ASP A 139 -1 N LYS A 135 O THR A 148 SHEET 7 A 8 ILE A 279 LYS A 285 1 O TYR A 280 N ILE A 136 SHEET 8 A 8 VAL A 330 LEU A 335 -1 O VAL A 330 N LYS A 285 SHEET 1 B 8 PHE B 230 ALA B 234 0 SHEET 2 B 8 HIS B 221 SER B 225 -1 N ILE B 222 O ILE B 233 SHEET 3 B 8 ALA B 206 LYS B 214 -1 N VAL B 211 O TRP B 223 SHEET 4 B 8 GLY B 244 LEU B 251 -1 O THR B 248 N ILE B 210 SHEET 5 B 8 LEU B 144 ASP B 149 -1 N ASP B 149 O THR B 245 SHEET 6 B 8 VAL B 134 ASP B 139 -1 N LYS B 135 O THR B 148 SHEET 7 B 8 ILE B 279 LYS B 285 1 O TYR B 280 N VAL B 134 SHEET 8 B 8 VAL B 330 LEU B 335 -1 O ASP B 332 N SER B 283 LINK OD1 ASN A 107 MG MG A 501 1555 1555 2.29 LINK O2P AMP A 301 MG MG A 501 1555 1555 2.29 LINK MG MG A 501 O HOH A 502 1555 1555 2.27 LINK MG MG A 501 O HOH A 519 1555 1555 2.35 LINK MG MG A 501 O HOH A 522 1555 1555 2.32 LINK MG MG A 501 O HOH A 526 1555 1555 2.31 LINK OD1 ASN B 107 MG MG B 802 1555 1555 2.45 LINK O2P AMP B 601 MG MG B 802 1555 1555 2.38 LINK MG MG B 802 O HOH B 819 1555 1555 2.26 LINK MG MG B 802 O HOH B 847 1555 1555 2.45 LINK MG MG B 802 O HOH B 882 1555 1555 2.36 SITE 1 AC1 6 ASN A 107 AMP A 301 HOH A 502 HOH A 519 SITE 2 AC1 6 HOH A 522 HOH A 526 SITE 1 AC2 6 ASN B 107 AMP B 601 HOH B 819 HOH B 826 SITE 2 AC2 6 HOH B 847 HOH B 882 SITE 1 AC3 16 ASN A 107 ALA A 111 ASP A 149 MET A 154 SITE 2 AC3 16 ASN A 162 LEU A 163 GLY A 198 PHE A 199 SITE 3 AC3 16 THR A 245 MG A 501 HOH A 502 HOH A 503 SITE 4 AC3 16 HOH A 504 HOH A 536 HOH A 549 HOH A 628 SITE 1 AC4 5 THR A 212 ARG A 237 THR A 240 PG4 A 403 SITE 2 AC4 5 HOH A 589 SITE 1 AC5 3 THR B 212 ARG B 237 HOH B 838 SITE 1 AC6 5 THR A 148 LEU A 241 THR A 246 PG4 A 401 SITE 2 AC6 5 HOH A 566 SITE 1 AC7 15 ASN B 107 ALA B 111 ASP B 149 MET B 154 SITE 2 AC7 15 ASN B 162 LEU B 163 GLY B 198 PHE B 199 SITE 3 AC7 15 THR B 245 MG B 802 HOH B 806 HOH B 810 SITE 4 AC7 15 HOH B 826 HOH B 847 HOH B 890 SITE 1 AC8 3 LYS B 137 TRP B 282 TRP B 333 SITE 1 AC9 1 LYS B 137 CRYST1 160.202 160.202 109.564 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006242 0.003604 0.000000 0.00000 SCALE2 0.000000 0.007208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009127 0.00000