PDB Short entry for 1TK5 HEADER TRANSFERASE/ELECTRON TRANSPORT/DNA 08-JUN-04 1TK5 TITLE T7 DNA POLYMERASE BINARY COMPLEX WITH 8 OXO GUANOSINE IN THE TITLE 2 TEMPLATING STRAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*AP*AP*A*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG) COMPND 3 P*TP*GP*CP*AP*A)-3'; COMPND 4 CHAIN: P; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*CP*CP*(8OG) COMPND 8 P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)- COMPND 9 3'; COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA POLYMERASE; COMPND 14 CHAIN: A; COMPND 15 SYNONYM: T7 DNA POLYMERASE; COMPND 16 EC: 2.7.7.7; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: THIOREDOXIN 1; COMPND 20 CHAIN: B; COMPND 21 SYNONYM: TRX1, TRX; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 7 ORGANISM_TAXID: 10760; SOURCE 8 GENE: 5; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGP5; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562; SOURCE 16 GENE: TRXA, TSNC, FIPA, B3781, C4701, Z5291, ECS4714, STM3915, SOURCE 17 STMD1.75, STY3639, T3381, SF3854, S3905; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PTRX-3 KEYWDS 8-OXOGUANOSINE DNA POLYMERASE, TRANSFERASE-ELECTRON TRANSPORT-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.G.BRIEBA,B.F.EICHMAN,R.J.KOKOSKA,S.DOUBLIE,T.A.KUNKEL,T.ELLENBERGER REVDAT 6 23-AUG-23 1TK5 1 REMARK SEQADV LINK REVDAT 5 31-JAN-18 1TK5 1 REMARK REVDAT 4 24-FEB-09 1TK5 1 VERSN REVDAT 3 28-SEP-04 1TK5 1 REVDAT REVDAT 2 21-SEP-04 1TK5 1 JRNL REVDAT 1 31-AUG-04 1TK5 0 JRNL AUTH L.G.BRIEBA,B.F.EICHMAN,R.J.KOKOSKA,S.DOUBLIE,T.A.KUNKEL, JRNL AUTH 2 T.ELLENBERGER JRNL TITL STRUCTURAL BASIS FOR THE DUAL CODING POTENTIAL OF JRNL TITL 2 8-OXOGUANOSINE BY A HIGH-FIDELITY DNA POLYMERASE. JRNL REF EMBO J. V. 23 3452 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15297882 JRNL DOI 10.1038/SJ.EMBOJ.7600354 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2606880.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 60457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2892 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9513 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 463 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6142 REMARK 3 NUCLEIC ACID ATOMS : 488 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.97000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.150 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.240 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 55.20 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-TT5_11.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : LIGAND.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA-TT.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE WAS NO DENSITY FOR 8OG IN THE REMARK 3 TEMPLATE STRAND AND NO DENSITY REMARK 3 FOR THE INCOMING DDATP. REMARK 4 REMARK 4 1TK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1T7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE. PEG400, REMARK 280 ETYLEN GLYCO, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 106.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 106.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC P 801 REMARK 465 DG P 802 REMARK 465 DA P 803 REMARK 465 DA P 804 REMARK 465 DA P 805 REMARK 465 DA P 806 REMARK 465 DC P 807 REMARK 465 DG P 808 REMARK 465 DA P 809 REMARK 465 DC P 810 REMARK 465 DG P 811 REMARK 465 DC T 851 REMARK 465 DC T 852 REMARK 465 DC T 853 REMARK 465 8OG T 854 REMARK 465 DT T 868 REMARK 465 DC T 869 REMARK 465 DG T 870 REMARK 465 DT T 871 REMARK 465 DT T 872 REMARK 465 DT T 873 REMARK 465 DT T 874 REMARK 465 DC T 875 REMARK 465 DG T 876 REMARK 465 LYS A 302 REMARK 465 ASN A 303 REMARK 465 GLU A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 533 REMARK 465 ASP A 534 REMARK 465 GLU A 535 REMARK 465 LYS A 536 REMARK 465 SER A 577 REMARK 465 GLN A 578 REMARK 465 TRP A 579 REMARK 465 VAL A 580 REMARK 465 ALA A 581 REMARK 465 GLY A 582 REMARK 465 GLU A 583 REMARK 465 GLN A 584 REMARK 465 GLN A 585 REMARK 465 SER B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG P 812 P OP1 OP2 REMARK 470 ARG A 111 CD NE CZ NH1 NH2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 475 CG OD1 OD2 REMARK 470 GLU A 480 CG CD OE1 OE2 REMARK 470 ARG A 518 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 520 CG OD1 ND2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 GLN A 539 CG CD OE1 NE2 REMARK 470 ILE A 540 CG1 CG2 CD1 REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 LYS A 549 CG CD CE NZ REMARK 470 GLU A 550 CG CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 553 CG CD CE NZ REMARK 470 LYS A 554 CG CD CE NZ REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 64 -75.73 -114.94 REMARK 500 HIS A 99 46.56 -109.34 REMARK 500 ASP A 156 -77.76 8.46 REMARK 500 ALA A 305 146.62 164.05 REMARK 500 ALA A 400 -44.38 -131.52 REMARK 500 HIS A 417 70.90 -107.18 REMARK 500 ASN A 423 48.37 -143.67 REMARK 500 GLU A 514 64.96 23.78 REMARK 500 ALA A 543 -141.33 -91.73 REMARK 500 LYS A 545 15.20 45.35 REMARK 500 GLU A 546 -56.72 -141.60 REMARK 500 HIS A 653 -78.09 59.34 REMARK 500 CYS A 703 38.76 -87.67 REMARK 500 GLN B 50 -11.10 -48.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC P 820 0.07 SIDE CHAIN REMARK 500 DG T 857 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THERE WAS NO DENSITY FOR 8OG IN THE REMARK 600 TEMPLATE STRAND AND NO DENSITY REMARK 600 FOR THE INCOMING DDATP. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 HOH A1001 O 91.9 REMARK 620 3 HOH A1002 O 82.8 170.0 REMARK 620 4 HOH A1003 O 83.1 94.4 93.3 REMARK 620 5 HOH A1004 O 89.6 85.5 86.1 172.7 REMARK 620 6 HOH A1005 O 170.2 90.0 96.7 87.2 100.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 992 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TK0 RELATED DB: PDB REMARK 900 RELATED ID: 1T8E RELATED DB: PDB DBREF 1TK5 A 1 704 UNP P00581 DPOL_BPT7 1 704 DBREF 1TK5 B 1 108 UNP P0AA25 THIO_ECOLI 1 108 DBREF 1TK5 P 801 822 PDB 1TK5 1TK5 801 822 DBREF 1TK5 T 851 876 PDB 1TK5 1TK5 851 876 SEQADV 1TK5 A UNP P00581 LYS 118 DELETION SEQADV 1TK5 A UNP P00581 ARG 119 DELETION SEQADV 1TK5 A UNP P00581 PHE 120 DELETION SEQADV 1TK5 A UNP P00581 GLY 121 DELETION SEQADV 1TK5 A UNP P00581 SER 122 DELETION SEQADV 1TK5 A UNP P00581 HIS 123 DELETION SEQRES 1 P 22 DC DG DA DA DA DA DC DG DA DC DG DG DC SEQRES 2 P 22 DC DA DG DT DG DC DC DA DDG SEQRES 1 T 26 DC DC DC 8OG DC DT DG DG DC DA DC DT DG SEQRES 2 T 26 DG DC DC DG DT DC DG DT DT DT DT DC DG SEQRES 1 A 698 MET ILE VAL SER ASP ILE GLU ALA ASN ALA LEU LEU GLU SEQRES 2 A 698 SER VAL THR LYS PHE HIS CYS GLY VAL ILE TYR ASP TYR SEQRES 3 A 698 SER THR ALA GLU TYR VAL SER TYR ARG PRO SER ASP PHE SEQRES 4 A 698 GLY ALA TYR LEU ASP ALA LEU GLU ALA GLU VAL ALA ARG SEQRES 5 A 698 GLY GLY LEU ILE VAL PHE HIS ASN GLY HIS LYS TYR ASP SEQRES 6 A 698 VAL PRO ALA LEU THR LYS LEU ALA LYS LEU GLN LEU ASN SEQRES 7 A 698 ARG GLU PHE HIS LEU PRO ARG GLU ASN CYS ILE ASP THR SEQRES 8 A 698 LEU VAL LEU SER ARG LEU ILE HIS SER ASN LEU LYS ASP SEQRES 9 A 698 THR ASP MET GLY LEU LEU ARG SER GLY LYS LEU PRO GLY SEQRES 10 A 698 ALA LEU GLU ALA TRP GLY TYR ARG LEU GLY GLU MET LYS SEQRES 11 A 698 GLY GLU TYR LYS ASP ASP PHE LYS ARG MET LEU GLU GLU SEQRES 12 A 698 GLN GLY GLU GLU TYR VAL ASP GLY MET GLU TRP TRP ASN SEQRES 13 A 698 PHE ASN GLU GLU MET MET ASP TYR ASN VAL GLN ASP VAL SEQRES 14 A 698 VAL VAL THR LYS ALA LEU LEU GLU LYS LEU LEU SER ASP SEQRES 15 A 698 LYS HIS TYR PHE PRO PRO GLU ILE ASP PHE THR ASP VAL SEQRES 16 A 698 GLY TYR THR THR PHE TRP SER GLU SER LEU GLU ALA VAL SEQRES 17 A 698 ASP ILE GLU HIS ARG ALA ALA TRP LEU LEU ALA LYS GLN SEQRES 18 A 698 GLU ARG ASN GLY PHE PRO PHE ASP THR LYS ALA ILE GLU SEQRES 19 A 698 GLU LEU TYR VAL GLU LEU ALA ALA ARG ARG SER GLU LEU SEQRES 20 A 698 LEU ARG LYS LEU THR GLU THR PHE GLY SER TRP TYR GLN SEQRES 21 A 698 PRO LYS GLY GLY THR GLU MET PHE CYS HIS PRO ARG THR SEQRES 22 A 698 GLY LYS PRO LEU PRO LYS TYR PRO ARG ILE LYS THR PRO SEQRES 23 A 698 LYS VAL GLY GLY ILE PHE LYS LYS PRO LYS ASN LYS ALA SEQRES 24 A 698 GLN ARG GLU GLY ARG GLU PRO CYS GLU LEU ASP THR ARG SEQRES 25 A 698 GLU TYR VAL ALA GLY ALA PRO TYR THR PRO VAL GLU HIS SEQRES 26 A 698 VAL VAL PHE ASN PRO SER SER ARG ASP HIS ILE GLN LYS SEQRES 27 A 698 LYS LEU GLN GLU ALA GLY TRP VAL PRO THR LYS TYR THR SEQRES 28 A 698 ASP LYS GLY ALA PRO VAL VAL ASP ASP GLU VAL LEU GLU SEQRES 29 A 698 GLY VAL ARG VAL ASP ASP PRO GLU LYS GLN ALA ALA ILE SEQRES 30 A 698 ASP LEU ILE LYS GLU TYR LEU MET ILE GLN LYS ARG ILE SEQRES 31 A 698 GLY GLN SER ALA GLU GLY ASP LYS ALA TRP LEU ARG TYR SEQRES 32 A 698 VAL ALA GLU ASP GLY LYS ILE HIS GLY SER VAL ASN PRO SEQRES 33 A 698 ASN GLY ALA VAL THR GLY ARG ALA THR HIS ALA PHE PRO SEQRES 34 A 698 ASN LEU ALA GLN ILE PRO GLY VAL ARG SER PRO TYR GLY SEQRES 35 A 698 GLU GLN CYS ARG ALA ALA PHE GLY ALA GLU HIS HIS LEU SEQRES 36 A 698 ASP GLY ILE THR GLY LYS PRO TRP VAL GLN ALA GLY ILE SEQRES 37 A 698 ASP ALA SER GLY LEU GLU LEU ARG CYS LEU ALA HIS PHE SEQRES 38 A 698 MET ALA ARG PHE ASP ASN GLY GLU TYR ALA HIS GLU ILE SEQRES 39 A 698 LEU ASN GLY ASP ILE HIS THR LYS ASN GLN ILE ALA ALA SEQRES 40 A 698 GLU LEU PRO THR ARG ASP ASN ALA LYS THR PHE ILE TYR SEQRES 41 A 698 GLY PHE LEU TYR GLY ALA GLY ASP GLU LYS ILE GLY GLN SEQRES 42 A 698 ILE VAL GLY ALA GLY LYS GLU ARG GLY LYS GLU LEU LYS SEQRES 43 A 698 LYS LYS PHE LEU GLU ASN THR PRO ALA ILE ALA ALA LEU SEQRES 44 A 698 ARG GLU SER ILE GLN GLN THR LEU VAL GLU SER SER GLN SEQRES 45 A 698 TRP VAL ALA GLY GLU GLN GLN VAL LYS TRP LYS ARG ARG SEQRES 46 A 698 TRP ILE LYS GLY LEU ASP GLY ARG LYS VAL HIS VAL ARG SEQRES 47 A 698 SER PRO HIS ALA ALA LEU ASN THR LEU LEU GLN SER ALA SEQRES 48 A 698 GLY ALA LEU ILE CYS LYS LEU TRP ILE ILE LYS THR GLU SEQRES 49 A 698 GLU MET LEU VAL GLU LYS GLY LEU LYS HIS GLY TRP ASP SEQRES 50 A 698 GLY ASP PHE ALA TYR MET ALA TRP VAL HIS ASP GLU ILE SEQRES 51 A 698 GLN VAL GLY CYS ARG THR GLU GLU ILE ALA GLN VAL VAL SEQRES 52 A 698 ILE GLU THR ALA GLN GLU ALA MET ARG TRP VAL GLY ASP SEQRES 53 A 698 HIS TRP ASN PHE ARG CYS LEU LEU ASP THR GLU GLY LYS SEQRES 54 A 698 MET GLY PRO ASN TRP ALA ILE CYS HIS SEQRES 1 B 108 SER ASP LYS ILE ILE HIS LEU THR ASP ASP SER PHE ASP SEQRES 2 B 108 THR ASP VAL LEU LYS ALA ASP GLY ALA ILE LEU VAL ASP SEQRES 3 B 108 PHE TRP ALA GLU TRP CYS GLY PRO CYS LYS MET ILE ALA SEQRES 4 B 108 PRO ILE LEU ASP GLU ILE ALA ASP GLU TYR GLN GLY LYS SEQRES 5 B 108 LEU THR VAL ALA LYS LEU ASN ILE ASP GLN ASN PRO GLY SEQRES 6 B 108 THR ALA PRO LYS TYR GLY ILE ARG GLY ILE PRO THR LEU SEQRES 7 B 108 LEU LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL SEQRES 8 B 108 GLY ALA LEU SER LYS GLY GLN LEU LYS GLU PHE LEU ASP SEQRES 9 B 108 ALA ASN LEU ALA MODRES 1TK5 DDG P 822 DG HET DDG P 822 21 HET MG A 903 1 HET SO4 A 904 5 HET SO4 A 905 5 HET MES A 991 12 HET 1PE A 992 16 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 DDG C10 H14 N5 O6 P FORMUL 5 MG MG 2+ FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 MES C6 H13 N O4 S FORMUL 9 1PE C10 H22 O6 FORMUL 10 HOH *772(H2 O) HELIX 1 1 LEU A 11 VAL A 15 5 5 HELIX 2 2 ARG A 35 SER A 37 5 3 HELIX 3 3 ASP A 38 ARG A 52 1 15 HELIX 4 4 TYR A 64 ASN A 78 1 15 HELIX 5 5 PRO A 84 GLU A 86 5 3 HELIX 6 6 THR A 91 HIS A 99 1 9 HELIX 7 7 ARG A 111 LEU A 115 5 5 HELIX 8 8 GLU A 126 GLU A 149 1 24 HELIX 9 9 GLY A 157 TRP A 161 5 5 HELIX 10 10 ASN A 164 SER A 187 1 24 HELIX 11 11 GLY A 202 SER A 210 1 9 HELIX 12 12 LEU A 211 GLY A 231 1 21 HELIX 13 13 ASP A 235 PHE A 261 1 27 HELIX 14 14 SER A 338 GLU A 348 1 11 HELIX 15 15 ASP A 365 VAL A 372 1 8 HELIX 16 16 ASP A 376 ALA A 400 1 25 HELIX 17 17 ALA A 405 VAL A 410 1 6 HELIX 18 18 TYR A 447 ALA A 454 1 8 HELIX 19 19 PHE A 455 HIS A 460 5 6 HELIX 20 20 GLY A 478 ASN A 493 1 16 HELIX 21 21 GLY A 494 ASN A 502 1 9 HELIX 22 22 ASP A 504 ALA A 513 1 10 HELIX 23 23 THR A 517 LEU A 529 1 13 HELIX 24 24 GLU A 546 THR A 559 1 14 HELIX 25 25 THR A 559 VAL A 574 1 16 HELIX 26 26 SER A 605 HIS A 607 5 3 HELIX 27 27 ALA A 608 LYS A 636 1 29 HELIX 28 28 THR A 662 TRP A 684 1 23 HELIX 29 29 THR B 8 VAL B 16 1 9 HELIX 30 30 CYS B 32 TYR B 49 1 18 HELIX 31 31 THR B 66 GLY B 71 5 6 HELIX 32 32 SER B 95 LEU B 107 1 13 SHEET 1 A 5 GLU A 30 TYR A 34 0 SHEET 2 A 5 PHE A 18 ASP A 25 -1 N GLY A 21 O TYR A 34 SHEET 3 A 5 ILE A 2 ALA A 8 -1 N VAL A 3 O TYR A 24 SHEET 4 A 5 ILE A 56 PHE A 58 1 O VAL A 57 N SER A 4 SHEET 5 A 5 CYS A 88 ASP A 90 1 O ILE A 89 N ILE A 56 SHEET 1 B 2 PHE A 232 PRO A 233 0 SHEET 2 B 2 LYS A 415 ILE A 416 -1 O ILE A 416 N PHE A 232 SHEET 1 C 3 TRP A 264 PRO A 267 0 SHEET 2 C 3 THR A 327 VAL A 332 -1 O VAL A 332 N TRP A 264 SHEET 3 C 3 GLY B 74 ILE B 75 -1 O ILE B 75 N THR A 327 SHEET 1 D 2 SER A 419 ASN A 421 0 SHEET 2 D 2 THR A 431 ALA A 433 -1 O THR A 431 N ASN A 421 SHEET 1 E 4 PHE A 646 VAL A 652 0 SHEET 2 E 4 GLU A 655 CYS A 660 -1 O GLY A 659 N ALA A 647 SHEET 3 E 4 VAL A 470 ALA A 476 -1 N VAL A 470 O CYS A 660 SHEET 4 E 4 THR A 692 GLY A 697 -1 O GLY A 697 N GLN A 471 SHEET 1 F 2 TRP A 592 LYS A 594 0 SHEET 2 F 2 LYS A 600 HIS A 602 -1 O VAL A 601 N ILE A 593 SHEET 1 G 5 ILE B 5 HIS B 6 0 SHEET 2 G 5 LEU B 53 ASN B 59 1 O LYS B 57 N ILE B 5 SHEET 3 G 5 ALA B 22 TRP B 28 1 N LEU B 24 O ALA B 56 SHEET 4 G 5 THR B 77 LYS B 82 -1 O PHE B 81 N ILE B 23 SHEET 5 G 5 GLU B 85 VAL B 91 -1 O ALA B 87 N LEU B 80 LINK O3' DA P 821 P DDG P 822 1555 1555 1.62 LINK OD1 ASP A 5 MG MG A 903 1555 1555 2.15 LINK MG MG A 903 O HOH A1001 1555 1555 2.27 LINK MG MG A 903 O HOH A1002 1555 1555 2.27 LINK MG MG A 903 O HOH A1003 1555 1555 2.23 LINK MG MG A 903 O HOH A1004 1555 1555 2.16 LINK MG MG A 903 O HOH A1005 1555 1555 2.15 CISPEP 1 PHE A 434 PRO A 435 0 -0.62 CISPEP 2 ILE B 75 PRO B 76 0 0.16 SITE 1 AC1 6 ASP A 5 HOH A1001 HOH A1002 HOH A1003 SITE 2 AC1 6 HOH A1004 HOH A1005 SITE 1 AC2 8 LYS A 226 ARG A 229 HOH A1039 HOH A1216 SITE 2 AC2 8 HOH A1345 HOH A1349 HOH A1369 HOH A1581 SITE 1 AC3 4 LYS A 184 ARG A 661 HOH A1100 HOH A1166 SITE 1 AC4 9 LEU A 77 ASN A 78 ARG A 79 HOH A1376 SITE 2 AC4 9 ILE B 5 SER B 11 THR B 14 ASP B 15 SITE 3 AC4 9 HOH B1074 SITE 1 AC5 6 ALA A 10 LEU A 11 TYR A 64 MET A 107 SITE 2 AC5 6 LYS A 136 TRP A 160 CRYST1 105.310 213.265 52.181 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019164 0.00000