PDB Short entry for 1TNR HEADER COMPLEX(LYMPHOKINE/RECEPTOR) 09-MAY-94 1TNR TITLE CRYSTAL STRUCTURE OF THE SOLUBLE HUMAN 55 KD TNF RECEPTOR-HUMAN TNF- TITLE 2 BETA COMPLEX: IMPLICATIONS FOR TNF RECEPTOR ACTIVATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR BETA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR P55; COMPND 7 CHAIN: R; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SF9 CELLS KEYWDS COMPLEX(LYMPHOKINE-RECEPTOR), COMPLEX(LYMPHOKINE-RECEPTOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.BANNER REVDAT 4 24-AUG-22 1TNR 1 JRNL REMARK REVDAT 3 24-FEB-09 1TNR 1 VERSN REVDAT 2 30-SEP-03 1TNR 1 JRNL DBREF REVDAT 1 31-JUL-94 1TNR 0 JRNL AUTH D.W.BANNER,A.D'ARCY,W.JANES,R.GENTZ,H.J.SCHOENFELD,C.BROGER, JRNL AUTH 2 H.LOETSCHER,W.LESSLAUER JRNL TITL CRYSTAL STRUCTURE OF THE SOLUBLE HUMAN 55 KD TNF JRNL TITL 2 RECEPTOR-HUMAN TNF BETA COMPLEX: IMPLICATIONS FOR TNF JRNL TITL 3 RECEPTOR ACTIVATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 73 431 1993 JRNL REFN ISSN 0092-8674 JRNL PMID 8387891 JRNL DOI 10.1016/0092-8674(93)90132-A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.D'ARCY,D.W.BANNER,W.JANES,F.K.WINKLER,H.LOETSCHER, REMARK 1 AUTH 2 H.J.SCHONFELD,M.ZULAUF,R.GENTZ,W.LESSLAUER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 A TNF-BETA-55 KDA TNF RECEPTOR COMPLEX. REMARK 1 REF J.MOL.BIOL. V. 229 555 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8381494 REMARK 1 DOI 10.1006/JMBI.1993.1055 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE RECEPTOR REGIONS R 15 - R 29 AND R 144 - R 153, I.E. REMARK 3 THE N- AND C-TERMINAL ENDS OF THE RECEPTOR, MUST BE REMARK 3 REGARDED AS TENTATIVE. REMARK 3 REMARK 3 THERE IS WEAK ELECTRON DENSITY FOR THE THREE CARBOHYDRATE REMARK 3 CHAINS ATTACHED TO ASPARAGINES R 25, R 116 AND R 122. REMARK 3 THESE POSITIONS HAVE BEEN MARKED WITH WATER MOLECULES 45, REMARK 3 42 AND 43, RESPECTIVELY. REMARK 3 REMARK 3 ASPARTIC ACID A 50 ADOPTS THE UNUSUAL EPSILON CONFORMATION REMARK 3 ON BINDING THE RECEPTOR. REMARK 3 REMARK 3 THE PEPTIDE PLANES A 40 - A 41 AND R 100 - R 101 MAY HAVE REMARK 3 THE WRONG ORIENTATION. REMARK 4 REMARK 4 1TNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.82000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.82000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.82000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.82000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU R 109 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 86 CE1 CE2 CZ OH REMARK 480 LYS A 89 CG CD CE NZ REMARK 480 PHE R 144 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 LEU R 145 CB CG CD1 CD2 REMARK 480 ARG R 146 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU R 147 CB CG CD OE1 OE2 REMARK 480 ASN R 148 CB CG OD1 ND2 REMARK 480 VAL R 151 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -138.81 53.79 REMARK 500 ASN A 62 60.87 17.36 REMARK 500 ASN A 63 27.68 49.19 REMARK 500 LYS A 84 103.10 -162.30 REMARK 500 GLN A 126 -11.24 79.36 REMARK 500 ASN R 25 92.75 -175.01 REMARK 500 SER R 27 1.16 80.80 REMARK 500 ILE R 28 70.00 -112.46 REMARK 500 CYS R 29 89.95 -67.53 REMARK 500 LYS R 35 144.09 -38.27 REMARK 500 ALA R 62 42.64 -106.97 REMARK 500 SER R 63 -179.97 -179.74 REMARK 500 VAL R 90 -4.47 -58.38 REMARK 500 ASP R 91 -2.76 -140.54 REMARK 500 ASN R 101 -4.00 112.85 REMARK 500 GLU R 109 -9.48 -53.28 REMARK 500 CYS R 120 43.30 71.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TNR A 28 171 UNP P01374 TNFB_HUMAN 62 205 DBREF 1TNR R 15 153 UNP P19438 TNR1A_HUMAN 44 182 SEQRES 1 A 144 LYS PRO ALA ALA HIS LEU ILE GLY ASP PRO SER LYS GLN SEQRES 2 A 144 ASN SER LEU LEU TRP ARG ALA ASN THR ASP ARG ALA PHE SEQRES 3 A 144 LEU GLN ASP GLY PHE SER LEU SER ASN ASN SER LEU LEU SEQRES 4 A 144 VAL PRO THR SER GLY ILE TYR PHE VAL TYR SER GLN VAL SEQRES 5 A 144 VAL PHE SER GLY LYS ALA TYR SER PRO LYS ALA THR SER SEQRES 6 A 144 SER PRO LEU TYR LEU ALA HIS GLU VAL GLN LEU PHE SER SEQRES 7 A 144 SER GLN TYR PRO PHE HIS VAL PRO LEU LEU SER SER GLN SEQRES 8 A 144 LYS MET VAL TYR PRO GLY LEU GLN GLU PRO TRP LEU HIS SEQRES 9 A 144 SER MET TYR HIS GLY ALA ALA PHE GLN LEU THR GLN GLY SEQRES 10 A 144 ASP GLN LEU SER THR HIS THR ASP GLY ILE PRO HIS LEU SEQRES 11 A 144 VAL LEU SER PRO SER THR VAL PHE PHE GLY ALA PHE ALA SEQRES 12 A 144 LEU SEQRES 1 R 139 CYS PRO GLN GLY LYS TYR ILE HIS PRO GLN ASN ASN SER SEQRES 2 R 139 ILE CYS CYS THR LYS CYS HIS LYS GLY THR TYR LEU TYR SEQRES 3 R 139 ASN ASP CYS PRO GLY PRO GLY GLN ASP THR ASP CYS ARG SEQRES 4 R 139 GLU CYS GLU SER GLY SER PHE THR ALA SER GLU ASN HIS SEQRES 5 R 139 LEU ARG HIS CYS LEU SER CYS SER LYS CYS ARG LYS GLU SEQRES 6 R 139 MET GLY GLN VAL GLU ILE SER SER CYS THR VAL ASP ARG SEQRES 7 R 139 ASP THR VAL CYS GLY CYS ARG LYS ASN GLN TYR ARG HIS SEQRES 8 R 139 TYR TRP SER GLU ASN LEU PHE GLN CYS PHE ASN CYS SER SEQRES 9 R 139 LEU CYS LEU ASN GLY THR VAL HIS LEU SER CYS GLN GLU SEQRES 10 R 139 LYS GLN ASN THR VAL CYS THR CYS HIS ALA GLY PHE PHE SEQRES 11 R 139 LEU ARG GLU ASN GLU CYS VAL SER CYS FORMUL 3 HOH *46(H2 O) HELIX 1 1 SER A 87 SER A 92 5 6 HELIX 2 2 GLY A 153 HIS A 156 5 4 SHEET 1 A 5 TRP A 129 LEU A 141 0 SHEET 2 A 5 GLY A 71 GLY A 83 -1 O GLY A 71 N LEU A 141 SHEET 3 A 5 PHE A 165 ALA A 170 -1 O PHE A 165 N GLN A 78 SHEET 4 A 5 ALA A 30 GLY A 35 -1 N ALA A 31 O ALA A 168 SHEET 5 A 5 TRP A 45 ARG A 46 -1 N ARG A 46 O ILE A 34 SHEET 1 B 5 TRP A 129 LEU A 141 0 SHEET 2 B 5 GLY A 71 GLY A 83 -1 O GLY A 71 N LEU A 141 SHEET 3 B 5 PHE A 165 ALA A 170 -1 O PHE A 165 N GLN A 78 SHEET 4 B 5 ALA A 30 GLY A 35 -1 N ALA A 31 O ALA A 168 SHEET 5 B 5 PHE A 53 GLN A 55 -1 N PHE A 53 O HIS A 32 SHEET 1 C 5 SER A 59 SER A 61 0 SHEET 2 C 5 SER A 64 LEU A 66 -1 N SER A 64 O SER A 61 SHEET 3 C 5 GLN A 146 ASP A 152 -1 N LEU A 147 O LEU A 65 SHEET 4 C 5 LEU A 95 PHE A 104 -1 O ALA A 98 N ASP A 152 SHEET 5 C 5 VAL A 112 VAL A 121 -1 O VAL A 112 N LEU A 103 SSBOND 1 CYS R 15 CYS R 29 1555 1555 2.04 SSBOND 2 CYS R 30 CYS R 43 1555 1555 2.04 SSBOND 3 CYS R 33 CYS R 52 1555 1555 2.02 SSBOND 4 CYS R 55 CYS R 70 1555 1555 2.03 SSBOND 5 CYS R 73 CYS R 88 1555 1555 2.02 SSBOND 6 CYS R 76 CYS R 96 1555 1555 2.03 SSBOND 7 CYS R 98 CYS R 114 1555 1555 2.03 SSBOND 8 CYS R 117 CYS R 129 1555 1555 2.04 SSBOND 9 CYS R 120 CYS R 137 1555 1555 2.02 SSBOND 10 CYS R 139 CYS R 150 1555 1555 2.03 CRYST1 145.640 145.640 145.640 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006866 0.00000