PDB Short entry for 1TP8 HEADER SUGAR BINDING PROTEIN 16-JUN-04 1TP8 TITLE CRYSTAL STRUCTURE OF A GALACTOSE SPECIFIC LECTIN FROM ARTOCARPUS TITLE 2 HIRSUTA IN COMPLEX WITH METHYL-A-D-GALACTOSE CAVEAT 1TP8 AMG E 502 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: AGGLUTININ BETA CHAIN; COMPND 6 CHAIN: B, D, F, H; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS HIRSUTUS; SOURCE 3 ORGANISM_TAXID: 291940; SOURCE 4 OTHER_DETAILS: SEEDS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS ARTOCARPUS HIRSUTA, MORACEAE PLANT LECTINS, JACALIN FAMILY, POST- KEYWDS 2 TRANSLATIONAL MODIFICATION, CARBOHYDRATE SPECIFICITY, METHYL--D- KEYWDS 3 GALACTOSE, THREE-DIMENSIONAL STRUCTURE, -PRISM I FOLD, SUGAR BINDING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.N.RAO,C.G.SURESH,U.V.KATRE,S.M.GAIKWAD,M.I.KHAN REVDAT 5 23-AUG-23 1TP8 1 REMARK HETSYN REVDAT 4 29-JUL-20 1TP8 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 SITE REVDAT 3 11-OCT-17 1TP8 1 REMARK REVDAT 2 24-FEB-09 1TP8 1 VERSN REVDAT 1 03-AUG-04 1TP8 0 JRNL AUTH K.N.RAO,C.G.SURESH,U.V.KATRE,S.M.GAIKWAD,M.I.KHAN JRNL TITL TWO ORTHORHOMBIC CRYSTAL STRUCTURES OF A GALACTOSE-SPECIFIC JRNL TITL 2 LECTIN FROM ARTOCARPUS HIRSUTA IN COMPLEX WITH JRNL TITL 3 METHYL-ALPHA-D-GALACTOSE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1404 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15272163 JRNL DOI 10.1107/S090744490401354X REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1316 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR OPTICS REMARK 200 OPTICS : CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28782 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.550 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M PO4 BUFFER, 35-40% AMMONIUM REMARK 280 SULPHATE,METHYL ALPHA GALACTOSE, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 SER B 20 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 ASN D 3 REMARK 465 SER D 20 REMARK 465 ASP F 1 REMARK 465 GLU F 2 REMARK 465 ASN F 3 REMARK 465 SER F 20 REMARK 465 ASP H 1 REMARK 465 GLU H 2 REMARK 465 ASN H 3 REMARK 465 SER H 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 19 CG1 CG2 REMARK 470 VAL D 19 CG1 CG2 REMARK 470 VAL F 19 CG1 CG2 REMARK 470 VAL H 19 CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CG CD CE NZ REMARK 480 LYS B 6 CG CD CE NZ REMARK 480 LYS B 18 CG CD CE NZ REMARK 480 LYS C 21 CG CD CE NZ REMARK 480 LYS D 18 CG CD CE NZ REMARK 480 LYS E 21 CG CD CE NZ REMARK 480 LYS F 6 CG CD CE NZ REMARK 480 LYS F 18 CG CD CE NZ REMARK 480 LYS G 21 CG CD CE NZ REMARK 480 LYS H 18 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 6 CB LYS B 6 CG -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP C 5 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG C 82 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU E 133 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG G 82 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 -159.21 -128.11 REMARK 500 THR A 23 -85.97 -104.47 REMARK 500 ALA A 24 -149.43 -163.43 REMARK 500 ALA B 17 157.92 -48.80 REMARK 500 PHE C 9 -164.57 -127.72 REMARK 500 THR C 23 -98.09 -128.26 REMARK 500 ALA D 17 150.57 -47.90 REMARK 500 PHE E 9 -159.77 -117.77 REMARK 500 THR E 23 -91.06 -105.64 REMARK 500 ALA E 24 -166.27 -162.37 REMARK 500 PHE G 9 -163.20 -122.98 REMARK 500 THR G 23 -84.17 -118.46 REMARK 500 ALA G 24 -168.56 -167.30 REMARK 500 ILE G 48 -164.91 -110.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS D 18 -18.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT MOLECULES REMARK 525 SOLVENT MOLECULES 1 - 31 ARE ASSOCIATED WITH COMPLEX A-B. REMARK 525 SOLVENT MOLECULES 101-130 ARE ASSOCIATED WITH COMPLEX A-B. REMARK 525 SOLVENT MOLECULES 201-227 ARE ASSOCIATED WITH COMPLEX A-B. REMARK 525 SOLVENT MOLECULES 301-329 ARE ASSOCIATED WITH COMPLEX A-B. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TOQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A GALACTOSE SPECIFIC LECTIN FROM ARTOCARPUS REMARK 900 HIRSUTA IN COMPLEX WITH METHYL-A-D-GALACTOSE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THESE MOLECULES IS NOT YET AVAILABLE IN ANY REMARK 999 SEQUENCE DATABASE DBREF 1TP8 A 1 133 PDB 1TP8 1TP8 1 133 DBREF 1TP8 B 1 20 PDB 1TP8 1TP8 1 20 DBREF 1TP8 C 1 133 PDB 1TP8 1TP8 1 133 DBREF 1TP8 D 1 20 PDB 1TP8 1TP8 1 20 DBREF 1TP8 E 1 133 PDB 1TP8 1TP8 1 133 DBREF 1TP8 F 1 20 PDB 1TP8 1TP8 1 20 DBREF 1TP8 G 1 133 PDB 1TP8 1TP8 1 133 DBREF 1TP8 H 1 20 PDB 1TP8 1TP8 1 20 SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS SER SER PHE ILE SER GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 THR GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP MET ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 20 ASP GLU ASN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 B 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS SER SER PHE ILE SER GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 THR GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP MET ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 20 ASP GLU ASN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 D 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS SER SER PHE ILE SER GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 THR GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP MET ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 20 ASP GLU ASN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 F 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS SER SER PHE ILE SER GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 THR GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP MET ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 20 ASP GLU ASN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 H 20 PRO TRP GLY ALA LYS VAL SER HET AMG A 500 13 HET AMG C 501 13 HET AMG E 502 13 HET AMG G 503 13 HETNAM AMG METHYL ALPHA-D-GALACTOPYRANOSIDE HETSYN AMG ALPHA-METHYL-D-GALACTOSIDE; METHYL ALPHA-D-GALACTOSIDE; HETSYN 2 AMG METHYL D-GALACTOSIDE; METHYL GALACTOSIDE FORMUL 9 AMG 4(C7 H14 O6) FORMUL 13 HOH *69(H2 O) SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O ILE A 120 N LYS A 2 SHEET 3 A 8 MET A 124 SER A 132 -1 O SER A 128 N LYS A 117 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 12 N MET A 129 SHEET 5 A 8 THR C 102 ASN C 110 -1 O ASN C 110 N ILE B 11 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O TYR C 78 N VAL C 75 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 PRO A 38 HIS A 44 0 SHEET 2 B 4 ILE A 25 ASP A 33 -1 N TYR A 32 O TYR A 39 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N ASN A 16 O GLN A 29 SHEET 4 B 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N GLY A 73 O VAL A 80 SHEET 4 C 8 THR A 102 ASN A 110 -1 O LEU A 106 N VAL A 68 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O GLY D 13 N PRO A 107 SHEET 6 C 8 MET C 124 SER C 132 -1 N LEU C 131 O VAL D 10 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N LYS C 117 O SER C 128 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N PHE C 4 O GLY C 118 SHEET 1 D 4 SER C 37 VAL C 40 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N TYR C 32 O TYR C 39 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N GLU C 14 O VAL C 31 SHEET 4 D 4 THR C 52 ILE C 56 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O ILE E 120 N LYS E 2 SHEET 3 E 8 MET E 124 SER E 132 -1 O SER E 132 N LEU E 112 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 10 N LEU E 131 SHEET 5 E 8 THR G 102 ASN G 110 -1 O PRO G 107 N GLY F 13 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N THR G 72 O THR G 102 SHEET 7 E 8 TYR G 78 THR G 88 -1 O VAL G 80 N GLY G 73 SHEET 8 E 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 VAL E 40 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N LEU E 34 O SER E 37 SHEET 3 F 4 ILE E 12 TYR E 19 -1 N ASN E 16 O GLN E 29 SHEET 4 F 4 THR E 52 SER E 57 -1 O ILE E 56 N ILE E 15 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N THR E 66 O LYS E 87 SHEET 4 G 8 THR E 102 ASN E 110 -1 O ILE E 108 N THR E 66 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O GLY H 13 N PRO E 107 SHEET 6 G 8 MET G 124 SER G 132 -1 N MET G 129 O VAL H 12 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N LEU G 112 O SER G 132 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N LYS G 2 O ILE G 120 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N LEU G 34 O SER G 37 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N SER G 18 O GLY G 26 SHEET 4 H 4 THR G 52 ILE G 56 -1 O ILE G 56 N ILE G 15 CISPEP 1 PHE A 60 PRO A 61 0 -0.47 CISPEP 2 GLY A 94 PRO A 95 0 1.38 CISPEP 3 GLY B 13 PRO B 14 0 2.35 CISPEP 4 PHE C 60 PRO C 61 0 -0.37 CISPEP 5 GLY C 94 PRO C 95 0 3.86 CISPEP 6 GLY D 13 PRO D 14 0 2.98 CISPEP 7 PHE E 60 PRO E 61 0 1.63 CISPEP 8 GLY E 94 PRO E 95 0 3.27 CISPEP 9 GLY F 13 PRO F 14 0 -0.51 CISPEP 10 PHE G 60 PRO G 61 0 0.77 CISPEP 11 GLY G 94 PRO G 95 0 3.41 CISPEP 12 GLY H 13 PRO H 14 0 0.92 CRYST1 89.900 121.900 131.600 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007600 0.00000