PDB Short entry for 1TYY HEADER TRANSFERASE 08-JUL-04 1TYY TITLE CRYSTAL STRUCTURE OF AMINOIMIDAZOLE RIBOSIDE KINASE FROM TITLE 2 SALMONELLA ENTERICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: CT18; SOURCE 5 GENE: STM4066; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS RIBOKINASE FOLD, ALPHA/BETA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,M.DOUGHERTY,D.M.DOWNS,S.E.EALICK REVDAT 2 24-FEB-09 1TYY 1 VERSN REVDAT 1 07-OCT-04 1TYY 0 JRNL AUTH Y.ZHANG,M.DOUGHERTY,D.M.DOWNS,S.E.EALICK JRNL TITL CRYSTAL STRUCTURE OF AN AMINOIMIDAZOLE RIBOSIDE JRNL TITL 2 KINASE FROM SALMONELLA ENTERICA; IMPLICATIONS FOR JRNL TITL 3 THE EVOLUTION OF THE RIBOKINASE SUPERFAMILY JRNL REF STRUCTURE V. 12 1809 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15458630 JRNL DOI 10.1016/J.STR.2004.07.020 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 516965.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.8 REMARK 3 NUMBER OF REFLECTIONS : 17549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2036 REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE : 0.4770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 23.19000 REMARK 3 B22 (A**2) : 7.64000 REMARK 3 B33 (A**2) : -30.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.94 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 44.98 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TYY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-04. REMARK 100 THE RCSB ID CODE IS RCSB023037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, POTASSIUM SULFATE, REMARK 280 TERTIARY-BUTANOL OR ISOPROPANOL, DTT, MES, PH 6.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.74250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.99350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.74250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.71500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.99350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 LEU A 91 REMARK 465 THR A 92 REMARK 465 ALA A 93 REMARK 465 ASP A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 ARG A 97 REMARK 465 SER A 309 REMARK 465 HIS A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 ALA A 313 REMARK 465 GLN A 314 REMARK 465 ALA A 315 REMARK 465 MET A 316 REMARK 465 THR A 317 REMARK 465 VAL A 318 REMARK 465 LYS A 319 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 3 REMARK 465 MET B 4 REMARK 465 LEU B 91 REMARK 465 THR B 92 REMARK 465 ALA B 93 REMARK 465 ASP B 94 REMARK 465 GLY B 95 REMARK 465 GLU B 96 REMARK 465 ARG B 97 REMARK 465 SER B 98 REMARK 465 GLY B 292 REMARK 465 ALA B 293 REMARK 465 SER B 311 REMARK 465 LEU B 312 REMARK 465 ALA B 313 REMARK 465 GLN B 314 REMARK 465 ALA B 315 REMARK 465 MET B 316 REMARK 465 THR B 317 REMARK 465 VAL B 318 REMARK 465 LYS B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 HIS A 104 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 168 CG OD1 ND2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 SER A 197 OG REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 242 CG1 CG2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ASP A 301 CG OD1 OD2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 88 CG1 CG2 CD1 REMARK 470 VAL B 89 CG1 CG2 REMARK 470 ASN B 90 CG OD1 ND2 REMARK 470 PHE B 99 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 HIS B 201 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 ASP B 215 CG OD1 OD2 REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 260 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MSE B 294 CG SE CE REMARK 470 THR B 295 OG1 CG2 REMARK 470 GLN B 302 CG CD OE1 NE2 REMARK 470 HIS B 310 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -70.49 -152.83 REMARK 500 ASN A 23 42.68 -174.56 REMARK 500 SER A 24 148.12 -172.87 REMARK 500 ASP A 55 37.03 -84.93 REMARK 500 HIS A 104 -80.95 -60.63 REMARK 500 THR A 169 -4.38 -46.59 REMARK 500 ALA A 205 54.81 -152.96 REMARK 500 LEU A 221 28.97 -143.16 REMARK 500 THR A 230 -106.37 -105.16 REMARK 500 ALA A 231 -10.69 -146.26 REMARK 500 PRO A 240 163.59 -45.49 REMARK 500 ASP A 243 70.23 -171.90 REMARK 500 VAL A 244 153.61 -48.16 REMARK 500 VAL A 245 -27.69 -147.97 REMARK 500 ASP A 246 107.20 -171.92 REMARK 500 ALA A 271 -75.38 -44.29 REMARK 500 PRO B 19 161.63 -48.78 REMARK 500 GLU B 20 -137.16 -162.23 REMARK 500 LYS B 21 -119.73 -40.86 REMARK 500 LEU B 102 -45.94 -141.11 REMARK 500 GLN B 121 135.42 -28.99 REMARK 500 ARG B 135 -70.06 -56.58 REMARK 500 SER B 163 -49.68 -29.58 REMARK 500 ARG B 264 6.63 -56.49 REMARK 500 TRP B 268 136.08 -39.78 REMARK 500 ALA B 290 -156.21 -85.11 REMARK 500 ALA B 296 11.81 -66.11 REMARK 500 SER B 308 -113.80 -91.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 292 O REMARK 620 2 THR A 248 O 98.9 REMARK 620 3 ASP A 246 OD1 89.1 105.8 REMARK 620 4 ALA A 287 O 92.3 109.6 143.8 REMARK 620 5 ASP A 246 O 162.7 97.9 82.2 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 183 O REMARK 620 2 GLY A 213 O 130.9 REMARK 620 3 ALA A 181 O 105.9 99.2 REMARK 620 4 ALA A 180 O 79.4 70.5 70.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 504 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 180 O REMARK 620 2 ALA B 181 O 82.8 REMARK 620 3 ALA B 183 O 85.3 110.5 REMARK 620 4 GLY B 213 O 89.1 125.7 122.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 505 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 287 O REMARK 620 2 ASP B 246 O 66.1 REMARK 620 3 ASP B 246 OD2 114.5 89.2 REMARK 620 4 THR B 248 O 122.0 118.8 123.1 REMARK 620 5 THR B 248 N 136.8 77.0 85.7 58.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 404 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 405 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 504 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 505 DBREF 1TYY A 1 319 UNP Q8ZKR2 Q8ZKR2_SALTY 1 319 DBREF 1TYY B 1 319 UNP Q8ZKR2 Q8ZKR2_SALTY 1 319 SEQADV 1TYY MET A -19 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY A -18 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER A -17 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER A -16 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY HIS A -15 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS A -14 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS A -13 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS A -12 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS A -11 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS A -10 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY SER A -9 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY SER A -8 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY A -7 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY LEU A -6 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY VAL A -5 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY PRO A -4 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY ARG A -3 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY A -2 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER A -1 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY HIS A 0 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY MSE A 148 UNP Q8ZKR2 MET 148 MODIFIED RESIDUE SEQADV 1TYY MSE A 165 UNP Q8ZKR2 MET 165 MODIFIED RESIDUE SEQADV 1TYY MSE A 286 UNP Q8ZKR2 MET 286 MODIFIED RESIDUE SEQADV 1TYY MSE A 294 UNP Q8ZKR2 MET 294 MODIFIED RESIDUE SEQADV 1TYY MET B -19 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY B -18 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER B -17 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER B -16 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY HIS B -15 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS B -14 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS B -13 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS B -12 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS B -11 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY HIS B -10 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY SER B -9 UNP Q8ZKR2 EXPRESSION TAG SEQADV 1TYY SER B -8 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY B -7 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY LEU B -6 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY VAL B -5 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY PRO B -4 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY ARG B -3 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY GLY B -2 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY SER B -1 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY HIS B 0 UNP Q8ZKR2 CLONING ARTIFACT SEQADV 1TYY MSE B 148 UNP Q8ZKR2 MET 148 MODIFIED RESIDUE SEQADV 1TYY MSE B 165 UNP Q8ZKR2 MET 165 MODIFIED RESIDUE SEQADV 1TYY MSE B 286 UNP Q8ZKR2 MET 286 MODIFIED RESIDUE SEQADV 1TYY MSE B 294 UNP Q8ZKR2 MET 294 MODIFIED RESIDUE SEQRES 1 A 339 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 339 LEU VAL PRO ARG GLY SER HIS MET LYS ALA MET ASN LYS SEQRES 3 A 339 VAL TRP VAL ILE GLY ASP ALA SER VAL ASP LEU VAL PRO SEQRES 4 A 339 GLU LYS GLN ASN SER TYR LEU LYS CYS PRO GLY GLY ALA SEQRES 5 A 339 SER ALA ASN VAL GLY VAL CYS VAL ALA ARG LEU GLY GLY SEQRES 6 A 339 GLU CYS GLY PHE ILE GLY CYS LEU GLY ASP ASP ASP ALA SEQRES 7 A 339 GLY ARG PHE LEU ARG GLN VAL PHE GLN ASP ASN GLY VAL SEQRES 8 A 339 ASP VAL THR PHE LEU ARG LEU ASP ALA ASP LEU THR SER SEQRES 9 A 339 ALA VAL LEU ILE VAL ASN LEU THR ALA ASP GLY GLU ARG SEQRES 10 A 339 SER PHE THR TYR LEU VAL HIS PRO GLY ALA ASP THR TYR SEQRES 11 A 339 VAL SER PRO GLN ASP LEU PRO PRO PHE ARG GLN TYR GLU SEQRES 12 A 339 TRP PHE TYR PHE SER SER ILE GLY LEU THR ASP ARG PRO SEQRES 13 A 339 ALA ARG GLU ALA CYS LEU GLU GLY ALA ARG ARG MSE ARG SEQRES 14 A 339 GLU ALA GLY GLY TYR VAL LEU PHE ASP VAL ASN LEU ARG SEQRES 15 A 339 SER LYS MSE TRP GLY ASN THR ASP GLU ILE PRO GLU LEU SEQRES 16 A 339 ILE ALA ARG SER ALA ALA LEU ALA SER ILE CYS LYS VAL SEQRES 17 A 339 SER ALA ASP GLU LEU CYS GLN LEU SER GLY ALA SER HIS SEQRES 18 A 339 TRP GLN ASP ALA ARG TYR TYR LEU ARG ASP LEU GLY CYS SEQRES 19 A 339 ASP THR THR ILE ILE SER LEU GLY ALA ASP GLY ALA LEU SEQRES 20 A 339 LEU ILE THR ALA GLU GLY GLU PHE HIS PHE PRO ALA PRO SEQRES 21 A 339 ARG VAL ASP VAL VAL ASP THR THR GLY ALA GLY ASP ALA SEQRES 22 A 339 PHE VAL GLY GLY LEU LEU PHE THR LEU SER ARG ALA ASN SEQRES 23 A 339 CYS TRP ASP HIS ALA LEU LEU ALA GLU ALA ILE SER ASN SEQRES 24 A 339 ALA ASN ALA CYS GLY ALA MSE ALA VAL THR ALA LYS GLY SEQRES 25 A 339 ALA MSE THR ALA LEU PRO PHE PRO ASP GLN LEU ASN THR SEQRES 26 A 339 PHE LEU SER SER HIS SER LEU ALA GLN ALA MET THR VAL SEQRES 27 A 339 LYS SEQRES 1 B 339 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 339 LEU VAL PRO ARG GLY SER HIS MET LYS ALA MET ASN LYS SEQRES 3 B 339 VAL TRP VAL ILE GLY ASP ALA SER VAL ASP LEU VAL PRO SEQRES 4 B 339 GLU LYS GLN ASN SER TYR LEU LYS CYS PRO GLY GLY ALA SEQRES 5 B 339 SER ALA ASN VAL GLY VAL CYS VAL ALA ARG LEU GLY GLY SEQRES 6 B 339 GLU CYS GLY PHE ILE GLY CYS LEU GLY ASP ASP ASP ALA SEQRES 7 B 339 GLY ARG PHE LEU ARG GLN VAL PHE GLN ASP ASN GLY VAL SEQRES 8 B 339 ASP VAL THR PHE LEU ARG LEU ASP ALA ASP LEU THR SER SEQRES 9 B 339 ALA VAL LEU ILE VAL ASN LEU THR ALA ASP GLY GLU ARG SEQRES 10 B 339 SER PHE THR TYR LEU VAL HIS PRO GLY ALA ASP THR TYR SEQRES 11 B 339 VAL SER PRO GLN ASP LEU PRO PRO PHE ARG GLN TYR GLU SEQRES 12 B 339 TRP PHE TYR PHE SER SER ILE GLY LEU THR ASP ARG PRO SEQRES 13 B 339 ALA ARG GLU ALA CYS LEU GLU GLY ALA ARG ARG MSE ARG SEQRES 14 B 339 GLU ALA GLY GLY TYR VAL LEU PHE ASP VAL ASN LEU ARG SEQRES 15 B 339 SER LYS MSE TRP GLY ASN THR ASP GLU ILE PRO GLU LEU SEQRES 16 B 339 ILE ALA ARG SER ALA ALA LEU ALA SER ILE CYS LYS VAL SEQRES 17 B 339 SER ALA ASP GLU LEU CYS GLN LEU SER GLY ALA SER HIS SEQRES 18 B 339 TRP GLN ASP ALA ARG TYR TYR LEU ARG ASP LEU GLY CYS SEQRES 19 B 339 ASP THR THR ILE ILE SER LEU GLY ALA ASP GLY ALA LEU SEQRES 20 B 339 LEU ILE THR ALA GLU GLY GLU PHE HIS PHE PRO ALA PRO SEQRES 21 B 339 ARG VAL ASP VAL VAL ASP THR THR GLY ALA GLY ASP ALA SEQRES 22 B 339 PHE VAL GLY GLY LEU LEU PHE THR LEU SER ARG ALA ASN SEQRES 23 B 339 CYS TRP ASP HIS ALA LEU LEU ALA GLU ALA ILE SER ASN SEQRES 24 B 339 ALA ASN ALA CYS GLY ALA MSE ALA VAL THR ALA LYS GLY SEQRES 25 B 339 ALA MSE THR ALA LEU PRO PHE PRO ASP GLN LEU ASN THR SEQRES 26 B 339 PHE LEU SER SER HIS SER LEU ALA GLN ALA MET THR VAL SEQRES 27 B 339 LYS MODRES 1TYY MSE A 148 MET SELENOMETHIONINE MODRES 1TYY MSE A 165 MET SELENOMETHIONINE MODRES 1TYY MSE A 286 MET SELENOMETHIONINE MODRES 1TYY MSE A 294 MET SELENOMETHIONINE MODRES 1TYY MSE B 148 MET SELENOMETHIONINE MODRES 1TYY MSE B 165 MET SELENOMETHIONINE MODRES 1TYY MSE B 286 MET SELENOMETHIONINE MODRES 1TYY MSE B 294 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE A 165 8 HET MSE A 286 8 HET MSE A 294 8 HET MSE B 148 8 HET MSE B 165 8 HET MSE B 286 8 HET MSE B 294 5 HET K A 404 1 HET K A 405 1 HET K B 504 1 HET K B 505 1 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 K 4(K 1+) FORMUL 7 HOH *54(H2 O) HELIX 1 1 GLY A 31 LEU A 43 1 13 HELIX 2 2 ASP A 56 ASP A 68 1 13 HELIX 3 3 GLY A 106 VAL A 111 5 6 HELIX 4 4 SER A 112 LEU A 116 5 5 HELIX 5 5 SER A 129 THR A 133 1 5 HELIX 6 6 ASP A 134 ALA A 151 1 18 HELIX 7 7 ARG A 162 TRP A 166 5 5 HELIX 8 8 ASN A 168 ASP A 170 5 3 HELIX 9 9 GLU A 171 ALA A 183 1 13 HELIX 10 10 ALA A 190 GLY A 198 1 9 HELIX 11 11 HIS A 201 ARG A 206 5 6 HELIX 12 12 LEU A 209 GLY A 213 5 5 HELIX 13 13 GLY A 222 ASP A 224 5 3 HELIX 14 14 GLY A 249 SER A 263 1 15 HELIX 15 15 ASP A 269 ALA A 287 1 19 HELIX 16 16 VAL A 288 ALA A 290 5 3 HELIX 17 17 PHE A 299 SER A 308 1 10 HELIX 18 18 GLY B 31 LEU B 43 1 13 HELIX 19 19 ASP B 56 ASP B 68 1 13 HELIX 20 20 GLY B 106 VAL B 111 5 6 HELIX 21 21 SER B 112 LEU B 116 5 5 HELIX 22 22 SER B 129 THR B 133 1 5 HELIX 23 23 ASP B 134 ALA B 151 1 18 HELIX 24 24 ASP B 170 ALA B 183 1 14 HELIX 25 25 ALA B 190 GLY B 198 1 9 HELIX 26 26 HIS B 201 ARG B 206 5 6 HELIX 27 27 LEU B 209 GLY B 213 5 5 HELIX 28 28 GLY B 249 SER B 263 1 15 HELIX 29 29 ASP B 269 ALA B 290 1 22 HELIX 30 30 PHE B 299 SER B 308 1 10 SHEET 1 A 3 VAL A 71 ASP A 72 0 SHEET 2 A 3 CYS A 47 LEU A 53 1 N CYS A 47 O ASP A 72 SHEET 3 A 3 LEU A 76 LEU A 78 1 O ARG A 77 N GLY A 51 SHEET 1 B 9 VAL A 71 ASP A 72 0 SHEET 2 B 9 CYS A 47 LEU A 53 1 N CYS A 47 O ASP A 72 SHEET 3 B 9 VAL A 7 ILE A 10 1 N VAL A 7 O GLY A 48 SHEET 4 B 9 TRP A 124 SER A 128 1 O TRP A 124 N TRP A 8 SHEET 5 B 9 TYR A 154 ASP A 158 1 O LEU A 156 N PHE A 125 SHEET 6 B 9 ILE A 185 SER A 189 1 O LYS A 187 N PHE A 157 SHEET 7 B 9 THR A 217 SER A 220 1 O SER A 220 N VAL A 188 SHEET 8 B 9 ALA A 226 ILE A 229 -1 O ILE A 229 N THR A 217 SHEET 9 B 9 GLU A 234 PHE A 237 -1 O PHE A 235 N LEU A 228 SHEET 1 C 7 THR A 100 TYR A 101 0 SHEET 2 C 7 VAL A 86 ILE A 88 -1 N ILE A 88 O THR A 100 SHEET 3 C 7 SER A 14 PRO A 19 1 N VAL A 15 O LEU A 87 SHEET 4 C 7 SER A 24 GLY A 30 -1 O CYS A 28 N ASP A 16 SHEET 5 C 7 SER B 24 GLY B 30 -1 O TYR B 25 N TYR A 25 SHEET 6 C 7 SER B 14 PRO B 19 -1 N ASP B 16 O CYS B 28 SHEET 7 C 7 VAL B 86 ILE B 88 1 O LEU B 87 N LEU B 17 SHEET 1 D 3 VAL B 71 ASP B 72 0 SHEET 2 D 3 CYS B 47 GLY B 54 1 N CYS B 47 O ASP B 72 SHEET 3 D 3 LEU B 76 ASP B 79 1 O ARG B 77 N GLY B 51 SHEET 1 E 9 VAL B 71 ASP B 72 0 SHEET 2 E 9 CYS B 47 GLY B 54 1 N CYS B 47 O ASP B 72 SHEET 3 E 9 VAL B 7 ILE B 10 1 N VAL B 9 O ILE B 50 SHEET 4 E 9 TRP B 124 SER B 128 1 O TRP B 124 N TRP B 8 SHEET 5 E 9 TYR B 154 ASP B 158 1 O LEU B 156 N PHE B 125 SHEET 6 E 9 ILE B 185 SER B 189 1 O LYS B 187 N PHE B 157 SHEET 7 E 9 THR B 217 GLY B 222 1 O SER B 220 N VAL B 188 SHEET 8 E 9 GLY B 225 THR B 230 -1 O ILE B 229 N THR B 217 SHEET 9 E 9 GLY B 233 PHE B 237 -1 O PHE B 237 N ALA B 226 LINK C ARG A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N ARG A 149 1555 1555 1.33 LINK C LYS A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N TRP A 166 1555 1555 1.32 LINK C ALA A 285 N MSE A 286 1555 1555 1.33 LINK C MSE A 286 N ALA A 287 1555 1555 1.33 LINK C ALA A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N THR A 295 1555 1555 1.33 LINK K K A 404 O GLY A 292 1555 1555 2.60 LINK K K A 404 O THR A 248 1555 1555 2.50 LINK K K A 404 OD1 ASP A 246 1555 1555 3.33 LINK K K A 404 O ALA A 287 1555 1555 3.19 LINK K K A 404 O ASP A 246 1555 1555 2.90 LINK K K A 405 O ALA A 183 1555 1555 2.49 LINK K K A 405 O GLY A 213 1555 1555 3.00 LINK K K A 405 O ALA A 181 1555 1555 2.62 LINK K K A 405 O ALA A 180 1555 1555 2.93 LINK C ARG B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N ARG B 149 1555 1555 1.33 LINK C LYS B 164 N MSE B 165 1555 1555 1.33 LINK C MSE B 165 N TRP B 166 1555 1555 1.33 LINK C ALA B 285 N MSE B 286 1555 1555 1.33 LINK C MSE B 286 N ALA B 287 1555 1555 1.33 LINK C MSE B 294 N THR B 295 1555 1555 1.33 LINK K K B 504 O ALA B 180 1555 1555 2.75 LINK K K B 504 O ALA B 181 1555 1555 2.48 LINK K K B 504 O ALA B 183 1555 1555 2.85 LINK K K B 504 O GLY B 213 1555 1555 2.80 LINK K K B 505 O ALA B 287 1555 1555 3.38 LINK K K B 505 O ASP B 246 1555 1555 2.55 LINK K K B 505 OD2 ASP B 246 1555 1555 2.56 LINK K K B 505 O THR B 248 1555 1555 2.68 LINK K K B 505 N THR B 248 1555 1555 3.05 SITE 1 AC1 4 ASP A 246 THR A 248 ALA A 287 GLY A 292 SITE 1 AC2 4 ALA A 180 ALA A 181 ALA A 183 GLY A 213 SITE 1 AC3 4 ALA B 180 ALA B 181 ALA B 183 GLY B 213 SITE 1 AC4 3 ASP B 246 THR B 248 ALA B 287 CRYST1 137.430 53.987 89.485 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007276 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011175 0.00000