PDB Short entry for 1U3T HEADER OXIDOREDUCTASE 23-JUL-04 1U3T TITLE CRYSTAL STRUCTURE OF HUMAN ALCOHOL DEHYDROGENASE ALPHA-ALPHA ISOFORM TITLE 2 COMPLEXED WITH N-CYCLOPENTYL-N-CYCLOBUTYLFORMAMIDE DETERMINED TO 2.5 TITLE 3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE ALPHA CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE ALPHA-ALPHA ISOFORM; COMPND 5 EC: 1.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADH1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK2233 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.GIBBONS,T.D.HURLEY REVDAT 4 25-OCT-23 1U3T 1 REMARK LINK REVDAT 3 11-OCT-17 1U3T 1 REMARK REVDAT 2 24-FEB-09 1U3T 1 VERSN REVDAT 1 26-OCT-04 1U3T 0 JRNL AUTH B.J.GIBBONS,T.D.HURLEY JRNL TITL STRUCTURE OF THREE CLASS I HUMAN ALCOHOL DEHYDROGENASES JRNL TITL 2 COMPLEXED WITH ISOENZYME SPECIFIC FORMAMIDE INHIBITORS JRNL REF BIOCHEMISTRY V. 43 12555 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15449945 JRNL DOI 10.1021/BI0489107 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 22908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.060 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.350 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54059 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.5MG/ML ENZYME, 3MM NAD+, 100MM NA REMARK 280 -ACES, 13-15% PEG 6000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.73500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMETRIC UNIT CONTAINS ONE HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 100 CB CYS B 100 SG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -34.04 -133.47 REMARK 500 LYS A 32 -157.37 -91.63 REMARK 500 LEU A 65 -164.18 -77.70 REMARK 500 HIS A 67 -1.86 -155.02 REMARK 500 PRO A 106 3.26 -68.98 REMARK 500 ASN A 109 -6.76 -140.37 REMARK 500 SER A 144 79.69 31.23 REMARK 500 CYS A 174 -79.47 -165.45 REMARK 500 ILE A 269 -58.17 -131.07 REMARK 500 SER A 324 -72.25 -44.32 REMARK 500 ILE A 368 -83.51 -104.19 REMARK 500 LEU B 65 -163.80 -79.49 REMARK 500 HIS B 67 -5.13 -158.37 REMARK 500 GLU B 68 78.37 -107.42 REMARK 500 ARG B 134 8.05 58.32 REMARK 500 SER B 144 74.34 27.81 REMARK 500 CYS B 174 -77.51 -162.23 REMARK 500 ILE B 269 -63.94 -129.73 REMARK 500 SER B 324 -70.01 -47.08 REMARK 500 ILE B 368 -83.42 -112.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 111.4 REMARK 620 3 CYS A 174 SG 113.5 119.3 REMARK 620 4 CCB A1378 O3 113.2 77.6 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 106.7 REMARK 620 3 CYS A 103 SG 114.5 108.8 REMARK 620 4 CYS A 111 SG 102.4 114.3 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 114.5 REMARK 620 3 CYS B 174 SG 115.3 112.8 REMARK 620 4 CCB B2378 O3 110.6 92.8 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 104.4 REMARK 620 3 CYS B 103 SG 111.7 119.7 REMARK 620 4 CYS B 111 SG 106.5 108.3 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCB A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCB B 2378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HSO RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE, ALPHA-ALPHA ISOENZYME REMARK 900 RELATED ID: 1U3U RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED WITH N- REMARK 900 BENZYLFORMAMIDE DETERMINED TO 1.6 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1U3V RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE BETA-1-BETA-1 ISOFORM COMPLEXED WITH N- REMARK 900 HEPTYLFORMAMIDE DETERMINED TO 1.65 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1U3W RELATED DB: PDB REMARK 900 HUMAN ALCOHOL DEHYDROGENASE GAMMA-2-GAMMA-2 ISOFORM COMPLEXED WITH REMARK 900 N-1-METHYLHEPTYLFORMAMIDE DETERMINED TO 1.45 ANGSTROM RESOLUTION DBREF 1U3T A 1 374 UNP P07327 ADHA_HUMAN 1 374 DBREF 1U3T B 1 374 UNP P07327 ADHA_HUMAN 1 374 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA VAL GLY ILE CYS GLY THR ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR MET VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU ALA ILE PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP VAL SER SEQRES 10 A 374 ASN PRO GLN GLY THR LEU GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG ARG LYS PRO ILE HIS HIS PHE LEU GLY ILE SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE LEU GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU CYS VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 A 374 GLY LYS SER ILE ARG THR ILE LEU MET PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA VAL GLY ILE CYS GLY THR ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY THR MET VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU ALA ILE PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP VAL SER SEQRES 10 B 374 ASN PRO GLN GLY THR LEU GLN ASP GLY THR SER ARG PHE SEQRES 11 B 374 THR CYS ARG ARG LYS PRO ILE HIS HIS PHE LEU GLY ILE SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL ASN VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA ILE SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE LEU GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU CYS VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU HIS SER SEQRES 29 B 374 GLY LYS SER ILE ARG THR ILE LEU MET PHE HET ZN A 375 1 HET ZN A 376 1 HET NAD A1377 44 HET CCB A1378 12 HET ZN B 375 1 HET ZN B 376 1 HET NAD B2377 44 HET CCB B2378 12 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CCB CYCLOBUTYL(CYCLOPENTYL)FORMAMIDE HETSYN CCB N-CYCLOPENTYL-N-CYCLOBUTYLFORMAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 CCB 2(C10 H17 N O) FORMUL 11 HOH *412(H2 O) HELIX 1 1 CYS A 46 SER A 54 1 9 HELIX 2 2 CYS A 100 ASN A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 ASN A 185 1 12 HELIX 6 6 GLY A 201 ALA A 214 1 14 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 LEU A 235 1 8 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 THR A 258 1 10 HELIX 11 11 ARG A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 THR A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 ALA A 344 5 3 HELIX 16 16 LYS A 354 SER A 364 1 11 HELIX 17 17 CYS B 46 SER B 54 1 9 HELIX 18 18 PRO B 165 CYS B 170 1 6 HELIX 19 19 LEU B 171 GLY B 173 5 3 HELIX 20 20 CYS B 174 ASN B 185 1 12 HELIX 21 21 GLY B 201 ALA B 214 1 14 HELIX 22 22 ASN B 225 ASP B 227 5 3 HELIX 23 23 LYS B 228 GLY B 236 1 9 HELIX 24 24 ASN B 242 TYR B 246 5 5 HELIX 25 25 PRO B 249 THR B 258 1 10 HELIX 26 26 ARG B 271 CYS B 282 1 12 HELIX 27 27 PRO B 305 THR B 310 1 6 HELIX 28 28 ILE B 318 PHE B 322 5 5 HELIX 29 29 LYS B 323 MET B 336 1 14 HELIX 30 30 LEU B 342 ALA B 344 5 3 HELIX 31 31 LYS B 354 SER B 364 1 11 SHEET 1 A 5 VAL A 63 ILE A 64 0 SHEET 2 A 5 ILE A 7 LEU A 14 -1 N LEU A 14 O VAL A 63 SHEET 3 A 5 SER A 22 VAL A 28 -1 O VAL A 26 N CYS A 9 SHEET 4 A 5 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 5 A 5 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 TYR A 149 ASP A 153 0 SHEET 2 B 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 B 5 GLU A 68 VAL A 76 -1 O ILE A 72 N LYS A 39 SHEET 4 B 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 B 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 C 4 TYR A 149 ASP A 153 0 SHEET 2 C 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 C 4 ARG A 369 MET A 373 -1 O LEU A 372 N VAL A 43 SHEET 4 C 4 ILE A 346 PRO A 351 1 N LEU A 350 O MET A 373 SHEET 1 D12 GLU A 239 ILE A 241 0 SHEET 2 D12 ARG A 218 VAL A 222 1 N ALA A 221 O GLU A 239 SHEET 3 D12 THR A 194 PHE A 198 1 N CYS A 195 O ILE A 220 SHEET 4 D12 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D12 THR A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D12 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 SHEET 7 D12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 D12 THR B 288 ILE B 291 1 N ILE B 291 O LYS B 315 SHEET 9 D12 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 D12 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 D12 ARG B 218 VAL B 222 1 O ILE B 220 N CYS B 195 SHEET 12 D12 GLU B 239 ILE B 241 1 O GLU B 239 N ALA B 221 SHEET 1 E 2 LEU A 301 MET A 303 0 SHEET 2 E 2 LEU B 301 MET B 303 -1 O LEU B 301 N MET A 303 SHEET 1 F 5 VAL B 63 ILE B 64 0 SHEET 2 F 5 ILE B 7 LEU B 14 -1 N LEU B 14 O VAL B 63 SHEET 3 F 5 SER B 22 VAL B 28 -1 O VAL B 26 N CYS B 9 SHEET 4 F 5 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 5 F 5 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 G 5 TYR B 149 ASP B 153 0 SHEET 2 G 5 GLU B 35 GLY B 44 -1 N VAL B 36 O VAL B 152 SHEET 3 G 5 GLU B 68 VAL B 76 -1 O ILE B 72 N LYS B 39 SHEET 4 G 5 LYS B 88 PRO B 91 -1 O VAL B 89 N GLY B 71 SHEET 5 G 5 VAL B 157 ILE B 160 -1 O ILE B 160 N LYS B 88 SHEET 1 H 4 TYR B 149 ASP B 153 0 SHEET 2 H 4 GLU B 35 GLY B 44 -1 N VAL B 36 O VAL B 152 SHEET 3 H 4 ARG B 369 MET B 373 -1 O LEU B 372 N VAL B 43 SHEET 4 H 4 ILE B 346 PRO B 351 1 N LEU B 350 O MET B 373 LINK SG CYS A 46 ZN ZN A 376 1555 1555 2.27 LINK NE2 HIS A 67 ZN ZN A 376 1555 1555 2.13 LINK SG CYS A 97 ZN ZN A 375 1555 1555 2.31 LINK SG CYS A 100 ZN ZN A 375 1555 1555 2.29 LINK SG CYS A 103 ZN ZN A 375 1555 1555 2.24 LINK SG CYS A 111 ZN ZN A 375 1555 1555 2.35 LINK SG CYS A 174 ZN ZN A 376 1555 1555 2.21 LINK ZN ZN A 376 O3 CCB A1378 1555 1555 2.47 LINK SG CYS B 46 ZN ZN B 376 1555 1555 2.43 LINK NE2 HIS B 67 ZN ZN B 376 1555 1555 2.12 LINK SG CYS B 97 ZN ZN B 375 1555 1555 2.34 LINK SG CYS B 100 ZN ZN B 375 1555 1555 2.37 LINK SG CYS B 103 ZN ZN B 375 1555 1555 2.31 LINK SG CYS B 111 ZN ZN B 375 1555 1555 2.17 LINK SG CYS B 174 ZN ZN B 376 1555 1555 2.28 LINK ZN ZN B 376 O3 CCB B2378 1555 1555 2.18 CISPEP 1 LEU A 61 PRO A 62 0 0.71 CISPEP 2 LEU B 61 PRO B 62 0 0.77 SITE 1 AC1 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC2 5 CYS A 46 HIS A 67 CYS A 174 NAD A1377 SITE 2 AC2 5 CCB A1378 SITE 1 AC3 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 AC4 5 CYS B 46 HIS B 67 CYS B 174 NAD B2377 SITE 2 AC4 5 CCB B2378 SITE 1 AC5 33 GLY A 47 THR A 48 HIS A 51 CYS A 174 SITE 2 AC5 33 THR A 178 GLY A 199 LEU A 200 GLY A 201 SITE 3 AC5 33 GLY A 202 VAL A 203 ASP A 223 ILE A 224 SITE 4 AC5 33 LYS A 228 VAL A 268 ILE A 269 VAL A 292 SITE 5 AC5 33 GLY A 293 VAL A 294 ALA A 317 ILE A 318 SITE 6 AC5 33 LEU A 319 LEU A 362 ARG A 369 ZN A 376 SITE 7 AC5 33 CCB A1378 HOH A1501 HOH A1511 HOH A1514 SITE 8 AC5 33 HOH A1527 HOH A1530 HOH A1534 HOH A1549 SITE 9 AC5 33 HOH A1551 SITE 1 AC6 31 GLY B 47 THR B 48 HIS B 51 CYS B 174 SITE 2 AC6 31 THR B 178 GLY B 199 LEU B 200 GLY B 201 SITE 3 AC6 31 GLY B 202 VAL B 203 ASP B 223 ILE B 224 SITE 4 AC6 31 LYS B 228 ILE B 269 ARG B 271 VAL B 292 SITE 5 AC6 31 GLY B 293 VAL B 294 ALA B 317 ILE B 318 SITE 6 AC6 31 LEU B 319 LEU B 362 ARG B 369 ZN B 376 SITE 7 AC6 31 CCB B2378 HOH B2389 HOH B2415 HOH B2419 SITE 8 AC6 31 HOH B2442 HOH B2445 HOH B2516 SITE 1 AC7 12 THR A 48 MET A 57 HIS A 67 ALA A 93 SITE 2 AC7 12 ILE A 94 VAL A 116 CYS A 174 VAL A 294 SITE 3 AC7 12 ILE A 318 LEU A 319 ZN A 376 NAD A1377 SITE 1 AC8 9 THR B 48 HIS B 67 ALA B 93 ILE B 94 SITE 2 AC8 9 CYS B 174 VAL B 294 ILE B 318 ZN B 376 SITE 3 AC8 9 NAD B2377 CRYST1 56.000 71.470 92.790 90.00 102.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017857 0.000000 0.004070 0.00000 SCALE2 0.000000 0.013992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011053 0.00000