PDB Short entry for 1U5S HEADER METAL BINDING PROTEIN 28-JUL-04 1U5S TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN NCK-2 SH3 DOMAIN AND PINCH-1 LIM4 TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD SH3 DOMAIN (RESIDUES 192-262); COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 2, SH2/SH3 ADAPTOR PROTEIN NCK-BETA, COMPND 6 NCK-2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PINCH PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: FOURTH LIM DOMAIN (RESIDUES 188-251); COMPND 12 SYNONYM: PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN, LIM AND COMPND 13 SENESCENT CELL ANTIGEN-LIKE DOMAINS 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB11; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: LIMS1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS PROTEIN-PROTEIN COMPLEX, BETA BARREL, BETA SHEET, ZINC FINGER, METAL KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR J.VAYNBERG,T.FUKUDA,O.VINOGRADOVA,A.VELYVIS,L.NG,C.WU,J.QIN REVDAT 3 02-MAR-22 1U5S 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1U5S 1 VERSN REVDAT 1 05-APR-05 1U5S 0 JRNL AUTH J.VAYNBERG,T.FUKUDA,K.CHEN,O.VINOGRADOVA,A.VELYVIS,Y.TU, JRNL AUTH 2 L.NG,C.WU,J.QIN JRNL TITL STRUCTURE OF AN ULTRAWEAK PROTEIN-PROTEIN COMPLEX AND ITS JRNL TITL 2 CRUCIAL ROLE IN REGULATION OF CELL MORPHOLOGY AND MOTILITY. JRNL REF MOL.CELL V. 17 513 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15721255 JRNL DOI 10.1016/J.MOLCEL.2004.12.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, XPLOR-NIH REMARK 3 AUTHORS : CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023280. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM LIM4 OF PINCH-1 U-15N,13C, REMARK 210 1.5MM SH3-3 OF NCK-2 UNLABELED, REMARK 210 25MM PHOSPHATE BUFFER, 100MM REMARK 210 NACL, 0.1MM TCEP, 90% H2O, 10% REMARK 210 D2O; 0.6MM SH3-3 OF NCK-2 U-15N, REMARK 210 13C, 2.5MM LIM4 OF PINCH-1, 25MM REMARK 210 PHOSPHATE BUFFER, 100MM NACL, REMARK 210 0.1MM TCEP, 90% H2O, 10% D2O; REMARK 210 1.3MM SH3-3 OF NCK-2 U-15N,13C, REMARK 210 25MM PHOSPHATE BUFFER, 100MM REMARK 210 NACL, 0.1MM TCEP, 90% H2O, 10% REMARK 210 D2O; 1.7MM LIM4 OF PINCH-1, U- REMARK 210 15N,13C 25MM PHOSPHATE BUFFER, REMARK 210 100MM NACL, 0.1MM TCEP, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 15N/13C-EDITED REMARK 210 15N,13C-SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, X-PLOR 3.1, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, RIGID BODY/TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE MOST REMARK 210 REPERESENTATIVE SIDE CHAINS REMARK 210 ORIENTATIONS ON THE COMPLEX REMARK 210 INTERFACE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES OF FREE FORM SH3 AND LIM4 DOMAINS WERE REMARK 210 DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-18 REMARK 470 RES CSSEQI ATOMS REMARK 470 HIS A 71 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 48 O GLN A 52 1.19 REMARK 500 OD1 ASN A 59 HH21 ARG B 83 1.33 REMARK 500 O GLU A 38 H ASP A 40 1.42 REMARK 500 O THR B 128 H GLN B 132 1.44 REMARK 500 O ASN A 48 H GLY A 51 1.48 REMARK 500 O GLU B 127 HD21 ASN B 131 1.51 REMARK 500 H ALA B 106 O ALA B 124 1.54 REMARK 500 O GLU A 21 H LEU A 55 1.56 REMARK 500 O PRO B 77 H ILE B 86 1.60 REMARK 500 N ASN A 48 O GLN A 52 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 1 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 1 VAL B 137 C VAL B 137 O -0.753 REMARK 500 2 PHE B 112 CA PHE B 112 CB 0.610 REMARK 500 2 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 2 VAL B 137 C VAL B 137 O -0.756 REMARK 500 3 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 3 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 3 VAL B 137 C VAL B 137 O -0.754 REMARK 500 4 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 4 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 4 VAL B 137 C VAL B 137 O -0.756 REMARK 500 5 PHE B 112 CA PHE B 112 CB 0.611 REMARK 500 5 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 5 VAL B 137 C VAL B 137 O -0.755 REMARK 500 6 PHE B 112 CA PHE B 112 CB 0.608 REMARK 500 6 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 6 VAL B 137 C VAL B 137 O -0.755 REMARK 500 7 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 7 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 7 VAL B 137 C VAL B 137 O -0.755 REMARK 500 8 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 8 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 8 VAL B 137 C VAL B 137 O -0.754 REMARK 500 9 PHE B 112 CA PHE B 112 CB 0.610 REMARK 500 9 PHE B 112 CB PHE B 112 CG 0.613 REMARK 500 9 VAL B 137 C VAL B 137 O -0.756 REMARK 500 10 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 10 PHE B 112 CB PHE B 112 CG 0.613 REMARK 500 10 VAL B 137 C VAL B 137 O -0.755 REMARK 500 11 PHE B 112 CA PHE B 112 CB 0.608 REMARK 500 11 PHE B 112 CB PHE B 112 CG 0.610 REMARK 500 11 VAL B 137 C VAL B 137 O -0.754 REMARK 500 12 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 12 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 12 VAL B 137 C VAL B 137 O -0.755 REMARK 500 13 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 13 PHE B 112 CB PHE B 112 CG 0.612 REMARK 500 13 VAL B 137 C VAL B 137 O -0.753 REMARK 500 14 PHE B 112 CA PHE B 112 CB 0.610 REMARK 500 14 PHE B 112 CB PHE B 112 CG 0.613 REMARK 500 14 VAL B 137 C VAL B 137 O -0.755 REMARK 500 15 PHE B 112 CA PHE B 112 CB 0.608 REMARK 500 15 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 15 VAL B 137 C VAL B 137 O -0.755 REMARK 500 16 PHE B 112 CA PHE B 112 CB 0.608 REMARK 500 16 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 16 VAL B 137 C VAL B 137 O -0.755 REMARK 500 17 PHE B 112 CA PHE B 112 CB 0.609 REMARK 500 17 PHE B 112 CB PHE B 112 CG 0.611 REMARK 500 REMARK 500 THIS ENTRY HAS 54 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE B 112 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 1 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 1 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 1 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 1 VAL B 137 CA - C - O ANGL. DEV. = -49.2 DEGREES REMARK 500 2 PHE B 112 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 2 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 2 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 2 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 2 VAL B 137 CA - C - O ANGL. DEV. = -49.1 DEGREES REMARK 500 3 PHE B 112 N - CA - CB ANGL. DEV. = 24.4 DEGREES REMARK 500 3 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 3 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 3 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 3 VAL B 137 CA - C - O ANGL. DEV. = -49.1 DEGREES REMARK 500 4 PHE B 112 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 4 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 4 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.0 DEGREES REMARK 500 4 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 4 VAL B 137 CA - C - O ANGL. DEV. = -49.0 DEGREES REMARK 500 5 PHE B 112 N - CA - CB ANGL. DEV. = 24.4 DEGREES REMARK 500 5 PHE B 112 CA - CB - CG ANGL. DEV. = -42.9 DEGREES REMARK 500 5 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.0 DEGREES REMARK 500 5 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 5 VAL B 137 CA - C - O ANGL. DEV. = -49.2 DEGREES REMARK 500 6 PHE B 112 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 6 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 6 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 6 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 6 VAL B 137 CA - C - O ANGL. DEV. = -49.3 DEGREES REMARK 500 7 PHE B 112 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 7 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 7 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 7 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 7 VAL B 137 CA - C - O ANGL. DEV. = -49.3 DEGREES REMARK 500 8 PHE B 112 N - CA - CB ANGL. DEV. = 24.4 DEGREES REMARK 500 8 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 8 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.0 DEGREES REMARK 500 8 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 8 VAL B 137 CA - C - O ANGL. DEV. = -49.0 DEGREES REMARK 500 9 PHE B 112 N - CA - CB ANGL. DEV. = 24.4 DEGREES REMARK 500 9 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 9 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 9 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 9 VAL B 137 CA - C - O ANGL. DEV. = -49.3 DEGREES REMARK 500 10 PHE B 112 N - CA - CB ANGL. DEV. = 24.4 DEGREES REMARK 500 10 PHE B 112 CA - CB - CG ANGL. DEV. = -42.8 DEGREES REMARK 500 10 PHE B 112 CB - CG - CD2 ANGL. DEV. = -28.1 DEGREES REMARK 500 10 PHE B 112 CB - CG - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 10 VAL B 137 CA - C - O ANGL. DEV. = -49.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 90 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 35.34 -162.06 REMARK 500 1 VAL A 5 93.43 -66.08 REMARK 500 1 LEU A 6 -54.26 -121.20 REMARK 500 1 THR A 19 -151.98 -144.51 REMARK 500 1 VAL A 33 92.29 -62.92 REMARK 500 1 ASN A 39 -59.45 57.69 REMARK 500 1 ASP A 40 -47.32 165.75 REMARK 500 1 GLU A 42 9.17 131.83 REMARK 500 1 LYS A 58 3.17 -60.52 REMARK 500 1 LEU A 64 -63.14 -105.12 REMARK 500 1 PRO A 68 93.11 -59.42 REMARK 500 1 MET B 74 167.83 -49.81 REMARK 500 1 GLU B 87 61.53 -160.59 REMARK 500 1 MET B 94 17.34 57.99 REMARK 500 1 LYS B 96 -154.71 -130.16 REMARK 500 1 LYS B 107 -31.75 -138.77 REMARK 500 1 GLU B 109 47.60 71.65 REMARK 500 1 PHE B 112 57.03 -95.80 REMARK 500 1 CYS B 126 177.60 -57.53 REMARK 500 1 PHE B 134 -81.57 -158.62 REMARK 500 2 SER A 3 35.30 -162.04 REMARK 500 2 VAL A 5 93.47 -66.07 REMARK 500 2 LEU A 6 -54.42 -121.19 REMARK 500 2 THR A 19 -151.98 -144.54 REMARK 500 2 VAL A 33 92.32 -63.15 REMARK 500 2 ASN A 39 -59.33 57.52 REMARK 500 2 ASP A 40 -47.36 165.78 REMARK 500 2 GLU A 42 9.34 131.75 REMARK 500 2 LYS A 58 3.20 -60.38 REMARK 500 2 LEU A 64 -63.07 -105.13 REMARK 500 2 PRO A 68 93.22 -59.42 REMARK 500 2 MET B 74 167.89 -49.77 REMARK 500 2 GLU B 87 61.41 -160.53 REMARK 500 2 MET B 94 17.26 58.11 REMARK 500 2 LYS B 96 -154.76 -130.23 REMARK 500 2 LYS B 107 -31.78 -138.74 REMARK 500 2 GLU B 109 47.50 71.79 REMARK 500 2 PHE B 112 56.97 -95.84 REMARK 500 2 CYS B 126 177.50 -57.57 REMARK 500 2 PHE B 134 -81.63 -158.59 REMARK 500 3 SER A 3 35.31 -161.99 REMARK 500 3 VAL A 5 93.40 -66.08 REMARK 500 3 LEU A 6 -54.28 -121.25 REMARK 500 3 THR A 19 -152.09 -144.49 REMARK 500 3 VAL A 33 92.26 -63.10 REMARK 500 3 ASN A 39 -59.40 57.67 REMARK 500 3 ASP A 40 -47.48 165.77 REMARK 500 3 GLU A 42 9.24 131.87 REMARK 500 3 LYS A 58 3.31 -60.46 REMARK 500 3 LEU A 64 -63.18 -105.09 REMARK 500 REMARK 500 THIS ENTRY HAS 360 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE B 112 0.08 SIDE CHAIN REMARK 500 2 PHE B 112 0.08 SIDE CHAIN REMARK 500 3 PHE B 112 0.08 SIDE CHAIN REMARK 500 4 PHE B 112 0.08 SIDE CHAIN REMARK 500 5 PHE B 112 0.08 SIDE CHAIN REMARK 500 6 PHE B 112 0.08 SIDE CHAIN REMARK 500 7 PHE B 112 0.08 SIDE CHAIN REMARK 500 8 PHE B 112 0.08 SIDE CHAIN REMARK 500 9 PHE B 112 0.08 SIDE CHAIN REMARK 500 10 PHE B 112 0.08 SIDE CHAIN REMARK 500 11 PHE B 112 0.08 SIDE CHAIN REMARK 500 12 PHE B 112 0.08 SIDE CHAIN REMARK 500 13 PHE B 112 0.08 SIDE CHAIN REMARK 500 14 PHE B 112 0.08 SIDE CHAIN REMARK 500 15 PHE B 112 0.08 SIDE CHAIN REMARK 500 16 PHE B 112 0.08 SIDE CHAIN REMARK 500 17 PHE B 112 0.08 SIDE CHAIN REMARK 500 18 PHE B 112 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 138 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 79 SG REMARK 620 2 CYS B 82 SG 109.6 REMARK 620 3 HIS B 99 ND1 104.8 107.9 REMARK 620 4 HIS B 102 ND1 123.1 106.4 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 139 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 105 SG REMARK 620 2 CYS B 108 SG 104.5 REMARK 620 3 CYS B 126 SG 117.0 92.2 REMARK 620 4 HIS B 129 ND1 117.8 96.9 119.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 139 DBREF 1U5S A 1 71 UNP O43639 NCK2_HUMAN 192 262 DBREF 1U5S B 74 137 UNP P48059 PINC_HUMAN 188 251 SEQADV 1U5S GLY B 72 UNP P48059 CLONING ARTIFACT SEQADV 1U5S SER B 73 UNP P48059 CLONING ARTIFACT SEQRES 1 A 71 GLN GLY SER ARG VAL LEU HIS VAL VAL GLN THR LEU TYR SEQRES 2 A 71 PRO PHE SER SER VAL THR GLU GLU GLU LEU ASN PHE GLU SEQRES 3 A 71 LYS GLY GLU THR MET GLU VAL ILE GLU LYS PRO GLU ASN SEQRES 4 A 71 ASP PRO GLU TRP TRP LYS CYS LYS ASN ALA ARG GLY GLN SEQRES 5 A 71 VAL GLY LEU VAL PRO LYS ASN TYR VAL VAL VAL LEU SER SEQRES 6 A 71 ASP GLY PRO ALA LEU HIS SEQRES 1 B 66 GLY SER MET GLY VAL PRO ILE CYS GLY ALA CYS ARG ARG SEQRES 2 B 66 PRO ILE GLU GLY ARG VAL VAL ASN ALA MET GLY LYS GLN SEQRES 3 B 66 TRP HIS VAL GLU HIS PHE VAL CYS ALA LYS CYS GLU LYS SEQRES 4 B 66 PRO PHE LEU GLY HIS ARG HIS TYR GLU ARG LYS GLY LEU SEQRES 5 B 66 ALA TYR CYS GLU THR HIS TYR ASN GLN LEU PHE GLY ASP SEQRES 6 B 66 VAL HET ZN B 138 1 HET ZN B 139 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 1 CYS B 126 PHE B 134 1 9 SHEET 1 A 5 GLN A 52 PRO A 57 0 SHEET 2 A 5 TRP A 43 ASN A 48 -1 N ASN A 48 O GLN A 52 SHEET 3 A 5 MET A 31 GLU A 35 -1 N GLU A 35 O LYS A 45 SHEET 4 A 5 VAL A 8 THR A 11 -1 N VAL A 9 O MET A 31 SHEET 5 A 5 VAL A 61 VAL A 63 -1 O VAL A 62 N GLN A 10 SHEET 1 B 2 ILE B 78 CYS B 79 0 SHEET 2 B 2 ARG B 84 PRO B 85 -1 O ARG B 84 N CYS B 79 SHEET 1 C 2 VAL B 90 VAL B 91 0 SHEET 2 C 2 TRP B 98 HIS B 99 -1 O TRP B 98 N VAL B 91 SHEET 1 D 2 TYR B 118 ARG B 120 0 SHEET 2 D 2 LEU B 123 TYR B 125 -1 O TYR B 125 N TYR B 118 LINK SG CYS B 79 ZN ZN B 138 1555 1555 2.30 LINK SG CYS B 82 ZN ZN B 138 1555 1555 2.30 LINK ND1 HIS B 99 ZN ZN B 138 1555 1555 2.00 LINK ND1 HIS B 102 ZN ZN B 138 1555 1555 2.00 LINK SG CYS B 105 ZN ZN B 139 1555 1555 2.30 LINK SG CYS B 108 ZN ZN B 139 1555 1555 2.30 LINK SG CYS B 126 ZN ZN B 139 1555 1555 2.30 LINK ND1 HIS B 129 ZN ZN B 139 1555 1555 2.00 SITE 1 AC1 4 CYS B 79 CYS B 82 HIS B 99 HIS B 102 SITE 1 AC2 4 CYS B 105 CYS B 108 CYS B 126 HIS B 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000