PDB Short entry for 1U5Z
HEADER    CYTOKINE, HORMONE/GROWTH FACTOR         28-JUL-04   1U5Z              
TITLE     THE CRYSTAL STRUCTURE OF MURINE APRIL, PH 8.5                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: TNF DOMAIN OF MURINE APRIL;                                
COMPND   5 SYNONYM: A PROLIFERATION- INDUCING LIGAND, APRIL;                    
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: TNFSF13, APRIL;                                                
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI (DE3);                             
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET-32A (MODIFIED)                        
KEYWDS    TNFSF, CYTOKINE, TRIMER, JELLY-ROLL, HORMONE-GROWTH FACTOR COMPLEX    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.J.WALLWEBER,D.M.COMPAAN,M.A.STAROVASNIK,S.G.HYMOWITZ                
REVDAT   4   23-AUG-23 1U5Z    1       REMARK SEQADV                            
REVDAT   3   13-JUL-11 1U5Z    1       VERSN                                    
REVDAT   2   24-FEB-09 1U5Z    1       VERSN                                    
REVDAT   1   12-OCT-04 1U5Z    0                                                
JRNL        AUTH   H.J.WALLWEBER,D.M.COMPAAN,M.A.STAROVASNIK,S.G.HYMOWITZ       
JRNL        TITL   THE CRYSTAL STRUCTURE OF A PROLIFERATION-INDUCING LIGAND,    
JRNL        TITL 2 APRIL.                                                       
JRNL        REF    J.MOL.BIOL.                   V. 343   283 2004              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   15451660                                                     
JRNL        DOI    10.1016/J.JMB.2004.08.040                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.40 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.1.07                                        
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.11                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 5231                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.223                           
REMARK   3   R VALUE            (WORKING SET) : 0.219                           
REMARK   3   FREE R VALUE                     : 0.265                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.700                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 506                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 25                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.40                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.45                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 266                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 100.0                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2270                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 31                           
REMARK   3   BIN FREE R VALUE                    : 0.3030                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 988                                     
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 1                                       
REMARK   3   SOLVENT ATOMS            : 18                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : 60.00                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 32.34                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.654         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.303         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.216         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.034         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.943                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.909                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1009 ; 0.009 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):   938 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  1367 ; 1.157 ; 1.935       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  2160 ; 0.706 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   125 ; 6.629 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    42 ;28.824 ;22.143       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   162 ;17.162 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     8 ;14.361 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   158 ; 0.069 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1114 ; 0.003 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   216 ; 0.002 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   151 ; 0.186 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  1021 ; 0.234 ; 0.200       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):   614 ; 0.082 ; 0.200       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):    16 ; 0.288 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    13 ; 0.296 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):    58 ; 0.243 ; 0.200       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     5 ; 0.118 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):   631 ; 1.801 ; 5.000       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1010 ; 2.760 ; 6.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   378 ; 2.418 ; 6.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   357 ; 3.746 ; 8.000       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   105        A   241                          
REMARK   3    ORIGIN FOR THE GROUP (A):  78.8600  61.1840  64.1250              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0971 T22:   0.0705                                     
REMARK   3      T33:   0.2085 T12:   0.0483                                     
REMARK   3      T13:   0.0504 T23:  -0.0670                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   7.4656 L22:   4.2619                                     
REMARK   3      L33:   7.5870 L12:  -0.6856                                     
REMARK   3      L13:   0.8217 L23:  -1.0219                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0921 S12:   0.3582 S13:  -0.8896                       
REMARK   3      S21:  -0.3802 S22:   0.0747 S23:  -0.4547                       
REMARK   3      S31:   0.6784 S32:   0.6350 S33:  -0.1668                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1U5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000023287.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 26-OCT-03                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 5.0.2                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : DOUBLE CRYSTALS SI(111)            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 4                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 5238                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.400                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY                : 6.700                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.04300                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.49                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.70                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.46100                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: TRUNCATED MODEL OF BAFF (PDB ENTRY 1OSG)             
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.5 M KSCN, VAPOR    
REMARK 280  DIFFUSION, SITTING DROP, TEMPERATURE 292K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3                            
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X,Y,-Z                                                 
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   Z,X,Y                                                   
REMARK 290       6555   Z,-X,-Y                                                 
REMARK 290       7555   -Z,-X,Y                                                 
REMARK 290       8555   -Z,X,-Y                                                 
REMARK 290       9555   Y,Z,X                                                   
REMARK 290      10555   -Y,Z,-X                                                 
REMARK 290      11555   Y,-Z,-X                                                 
REMARK 290      12555   -Y,-Z,X                                                 
REMARK 290      13555   X+1/2,Y+1/2,Z+1/2                                       
REMARK 290      14555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290      15555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290      16555   X+1/2,-Y+1/2,-Z+1/2                                     
REMARK 290      17555   Z+1/2,X+1/2,Y+1/2                                       
REMARK 290      18555   Z+1/2,-X+1/2,-Y+1/2                                     
REMARK 290      19555   -Z+1/2,-X+1/2,Y+1/2                                     
REMARK 290      20555   -Z+1/2,X+1/2,-Y+1/2                                     
REMARK 290      21555   Y+1/2,Z+1/2,X+1/2                                       
REMARK 290      22555   -Y+1/2,Z+1/2,-X+1/2                                     
REMARK 290      23555   Y+1/2,-Z+1/2,-X+1/2                                     
REMARK 290      24555   -Y+1/2,-Z+1/2,X+1/2                                     
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY2   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY1   6  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY2   6 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY1   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY2   7 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY2   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY1   9  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   9  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY3   9  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY1  10  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2  10  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY3  10 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY1  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY3  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY1  12  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY3  12  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY1  13  1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY2  13  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY3  13  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY1  14 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY2  14  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY3  14  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY1  15 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY2  15  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY3  15  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY1  16  1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY2  16  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY3  16  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY1  17  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY2  17  1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY3  17  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY1  18  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY2  18 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY3  18  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY1  19  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY2  19 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY3  19  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY1  20  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY2  20  1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY3  20  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY1  21  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY2  21  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY3  21  1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY1  22  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY2  22  0.000000  0.000000  1.000000       46.08300            
REMARK 290   SMTRY3  22 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY1  23  0.000000  1.000000  0.000000       46.08300            
REMARK 290   SMTRY2  23  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY3  23 -1.000000  0.000000  0.000000       46.08300            
REMARK 290   SMTRY1  24  0.000000 -1.000000  0.000000       46.08300            
REMARK 290   SMTRY2  24  0.000000  0.000000 -1.000000       46.08300            
REMARK 290   SMTRY3  24  1.000000  0.000000  0.000000       46.08300            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICALLY RELEVANT TRIMER IS GENERATED BY A           
REMARK 300 CRYSTALLOGRAPHIC 3-FOLD                                              
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA,PQS                                              
REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15650 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT2   2  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT1   3  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT2   3  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT3   3  1.000000  0.000000  0.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   102                                                      
REMARK 465     SER A   103                                                      
REMARK 465     LYS A   104                                                      
REMARK 465     LYS A   119                                                      
REMARK 465     ALA A   120                                                      
REMARK 465     MET A   191                                                      
REMARK 465     PRO A   192                                                      
REMARK 465     SER A   193                                                      
REMARK 465     ASP A   194                                                      
REMARK 465     PRO A   195                                                      
REMARK 465     ASP A   196                                                      
REMARK 465     ARG A   197                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ASN A 115    CG   OD1  ND2                                       
REMARK 470     ASP A 121    CG   OD1  OD2                                       
REMARK 470     SER A 122    OG                                                  
REMARK 470     VAL A 165    CG1  CG2                                            
REMARK 470     PHE A 167    CG   CD1  CD2  CE1  CE2  CZ                         
REMARK 470     THR A 168    OG1  CG2                                            
REMARK 470     ARG A 189    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 222    CG   CD   NE   CZ   NH1  NH2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OG   SER A   158     OE1  GLN A   171              1.97            
REMARK 500   NH1  ARG A   135     O    HOH A     9              2.13            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A 137       37.34   -165.33                                   
REMARK 500    PRO A 221        4.19    -68.82                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NI A 101  NI                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A 106   NE2                                                    
REMARK 620 2 HIS A 106   NE2  73.9                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 101                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1U5X   RELATED DB: PDB                                   
REMARK 900 SAME PROTEIN RYSTALLIZED IN SPACE GROUP I23 AT PH 5.0                
REMARK 900 RELATED ID: 1U5Y   RELATED DB: PDB                                   
REMARK 900 SAME PROTEIN RYSTALLIZED IN SPACE GROUP C2 AT PH 8.0                 
DBREF  1U5Z A  104   241  UNP    Q9D777   TNF13_MOUSE    104    241             
SEQADV 1U5Z GLY A  102  UNP  Q9D777              CLONING ARTIFACT               
SEQADV 1U5Z SER A  103  UNP  Q9D777              CLONING ARTIFACT               
SEQRES   1 A  140  GLY SER LYS LYS HIS SER VAL LEU HIS LEU VAL PRO VAL          
SEQRES   2 A  140  ASN ILE THR SER LYS ALA ASP SER ASP VAL THR GLU VAL          
SEQRES   3 A  140  MET TRP GLN PRO VAL LEU ARG ARG GLY ARG GLY LEU GLU          
SEQRES   4 A  140  ALA GLN GLY ASP ILE VAL ARG VAL TRP ASP THR GLY ILE          
SEQRES   5 A  140  TYR LEU LEU TYR SER GLN VAL LEU PHE HIS ASP VAL THR          
SEQRES   6 A  140  PHE THR MET GLY GLN VAL VAL SER ARG GLU GLY GLN GLY          
SEQRES   7 A  140  ARG ARG GLU THR LEU PHE ARG CYS ILE ARG SER MET PRO          
SEQRES   8 A  140  SER ASP PRO ASP ARG ALA TYR ASN SER CYS TYR SER ALA          
SEQRES   9 A  140  GLY VAL PHE HIS LEU HIS GLN GLY ASP ILE ILE THR VAL          
SEQRES  10 A  140  LYS ILE PRO ARG ALA ASN ALA LYS LEU SER LEU SER PRO          
SEQRES  11 A  140  HIS GLY THR PHE LEU GLY PHE VAL LYS LEU                      
HET     NI  A 101       1                                                       
HETNAM      NI NICKEL (II) ION                                                  
FORMUL   2   NI    NI 2+                                                        
FORMUL   3  HOH   *18(H2 O)                                                     
SHEET    1   A 5 LEU A 139  GLN A 142  0                                        
SHEET    2   A 5 ILE A 145  VAL A 148 -1  O  ARG A 147   N  GLU A 140           
SHEET    3   A 5 ILE A 215  ILE A 220 -1  O  ILE A 216   N  VAL A 146           
SHEET    4   A 5 MET A 169  GLU A 176 -1  N  VAL A 172   O  LYS A 219           
SHEET    5   A 5 ARG A 181  ARG A 189 -1  O  GLU A 182   N  ARG A 175           
SHEET    1   B 8 LEU A 139  GLN A 142  0                                        
SHEET    2   B 8 ILE A 145  VAL A 148 -1  O  ARG A 147   N  GLU A 140           
SHEET    3   B 8 ILE A 215  ILE A 220 -1  O  ILE A 216   N  VAL A 146           
SHEET    4   B 8 THR A 125  ARG A 135 -1  N  THR A 125   O  ILE A 220           
SHEET    5   B 8 VAL A 108  THR A 117 -1  N  ASN A 115   O  MET A 128           
SHEET    6   B 8 PHE A 235  LEU A 241 -1  O  LEU A 236   N  LEU A 111           
SHEET    7   B 8 GLY A 152  PHE A 162 -1  N  ILE A 153   O  LEU A 241           
SHEET    8   B 8 ASN A 200  LEU A 210 -1  O  ASN A 200   N  PHE A 162           
SSBOND   1 CYS A  187    CYS A  202                          1555   1555  2.05  
LINK        NI    NI A 101                 NE2 HIS A 106     1555   9555  2.57  
LINK        NI    NI A 101                 NE2 HIS A 106     1555   5555  2.72  
SITE     1 AC1  1 HIS A 106                                                     
CRYST1   92.166   92.166   92.166  90.00  90.00  90.00 I 2 3        24          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010850  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010850  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010850        0.00000