PDB Short entry for 1U78 HEADER DNA BINDING PROTEIN/DNA 03-AUG-04 1U78 TITLE STRUCTURE OF THE BIPARTITE DNA-BINDING DOMAIN OF TC3 TRANSPOSASE BOUND TITLE 2 TO TRANSPOSON DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26-MER; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 26-MER; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TRANSPOSABLE ELEMENT TC3 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RESIDUES 1-135; COMPND 13 SYNONYM: TC3 TRANSPOSASE; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 7 ORGANISM_TAXID: 6239; SOURCE 8 GENE: TC3; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PRP1442; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS TRANSPOSASE, TRANSPOSON DNA, BIPARTITE DNA-BINDING, HTH-MOTIF, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WATKINS,G.VAN POUDEROYEN,T.K.SIXMA REVDAT 4 25-OCT-23 1U78 1 REMARK REVDAT 3 10-NOV-21 1U78 1 REMARK SEQADV REVDAT 2 24-FEB-09 1U78 1 VERSN REVDAT 1 31-AUG-04 1U78 0 JRNL AUTH S.WATKINS,G.VAN POUDEROYEN,T.K.SIXMA JRNL TITL STRUCTURAL ANALYSIS OF THE BIPARTITE DNA-BINDING DOMAIN OF JRNL TITL 2 TC3 TRANSPOSASE BOUND TO TRANSPOSON DNA JRNL REF NUCLEIC ACIDS RES. V. 32 4306 2004 JRNL REFN ISSN 0305-1048 JRNL PMID 15304566 JRNL DOI 10.1093/NAR/GKH770 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4560 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 816 REMARK 3 NUCLEIC ACID ATOMS : 1060 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : 2.91000 REMARK 3 B12 (A**2) : -0.97000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.488 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2009 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2925 ; 1.897 ; 2.614 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 102 ; 5.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1134 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 843 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 514 ; 0.557 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 829 ; 1.038 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 1.388 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2096 ; 2.066 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17820 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1TC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA ACETATE, GLYCEROL, DTT, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.18600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 170.37200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.77900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 212.96500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.59300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.18600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 170.37200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 212.96500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.77900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.59300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 105 REMARK 465 ILE A 106 REMARK 465 VAL A 107 REMARK 465 ARG A 108 REMARK 465 GLN A 109 REMARK 465 LYS A 110 REMARK 465 LEU A 111 REMARK 465 ARG A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 PRO A 115 REMARK 465 LEU A 116 REMARK 465 LEU A 117 REMARK 465 SER A 118 REMARK 465 ALA A 119 REMARK 465 ASP A 120 REMARK 465 HIS A 121 REMARK 465 LYS A 122 REMARK 465 LEU A 123 REMARK 465 LYS A 124 REMARK 465 ARG A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 PHE A 128 REMARK 465 ALA A 129 REMARK 465 LYS A 130 REMARK 465 ASN A 131 REMARK 465 ASN A 132 REMARK 465 MET A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 14 O3' DA B 14 C3' -0.051 REMARK 500 DC C 41 O3' DC C 41 C3' -0.041 REMARK 500 DA C 43 O3' DA C 43 C3' -0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 6 O4' - C4' - C3' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG B 6 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 7 O5' - P - OP2 ANGL. DEV. = -7.2 DEGREES REMARK 500 DG B 7 C5' - C4' - C3' ANGL. DEV. = 7.4 DEGREES REMARK 500 DT B 8 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT B 8 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA B 14 N9 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 DA B 14 O4' - C1' - N9 ANGL. DEV. = -7.3 DEGREES REMARK 500 DG B 15 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 DG B 15 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA B 17 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC B 22 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC B 28 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT C 29 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT C 29 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG C 30 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 31 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 33 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG C 34 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 42 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 42 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 42 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DA C 43 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DA C 43 C5' - C4' - O4' ANGL. DEV. = 7.0 DEGREES REMARK 500 DA C 43 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 44 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA C 45 O5' - P - OP1 ANGL. DEV. = -6.6 DEGREES REMARK 500 DA C 45 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 46 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 47 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 DG C 47 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA C 48 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 49 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC C 51 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 52 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 69.18 -162.65 REMARK 500 GLN A 88 57.91 38.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TC3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SPECIFIC DNA-BINDING DOMAIN OF TC3 REMARK 900 TRANSPOSASE OF C. ELEGANS IN COMPLEX WITH TRANSPOSON DNA DBREF 1U78 A 1 135 UNP P34257 TC3A_CAEEL 1 135 DBREF 1U78 B 3 28 PDB 1U78 1U78 3 28 DBREF 1U78 C 29 54 PDB 1U78 1U78 29 54 SEQADV 1U78 VAL A 41 UNP P34257 GLU 41 ENGINEERED MUTATION SEQADV 1U78 HIS A 136 UNP P34257 EXPRESSION TAG SEQADV 1U78 HIS A 137 UNP P34257 EXPRESSION TAG SEQADV 1U78 HIS A 138 UNP P34257 EXPRESSION TAG SEQADV 1U78 HIS A 139 UNP P34257 EXPRESSION TAG SEQADV 1U78 HIS A 140 UNP P34257 EXPRESSION TAG SEQADV 1U78 HIS A 141 UNP P34257 EXPRESSION TAG SEQRES 1 B 26 DG DG DG DG DG DT DC DC DT DA DT DA DG SEQRES 2 B 26 DA DA DC DT DT DT DC DC DC DA DC DA DC SEQRES 1 C 26 DT DG DT DG DG DG DA DA DA DG DT DT DC SEQRES 2 C 26 DT DA DT DA DG DG DA DC DC DC DC DC DG SEQRES 1 A 141 MET PRO ARG GLY SER ALA LEU SER ASP THR GLU ARG ALA SEQRES 2 A 141 GLN LEU ASP VAL MET LYS LEU LEU ASN VAL SER LEU HIS SEQRES 3 A 141 GLU MET SER ARG LYS ILE SER ARG SER ARG HIS CYS ILE SEQRES 4 A 141 ARG VAL TYR LEU LYS ASP PRO VAL SER TYR GLY THR SER SEQRES 5 A 141 LYS ARG ALA PRO ARG ARG LYS ALA LEU SER VAL ARG ASP SEQRES 6 A 141 GLU ARG ASN VAL ILE ARG ALA ALA SER ASN SER CYS LYS SEQRES 7 A 141 THR ALA ARG ASP ILE ARG ASN GLU LEU GLN LEU SER ALA SEQRES 8 A 141 SER LYS ARG THR ILE LEU ASN VAL ILE LYS ARG SER GLY SEQRES 9 A 141 VAL ILE VAL ARG GLN LYS LEU ARG PRO ALA PRO LEU LEU SEQRES 10 A 141 SER ALA ASP HIS LYS LEU LYS ARG LEU GLU PHE ALA LYS SEQRES 11 A 141 ASN ASN MET GLY THR HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *7(H2 O) HELIX 1 1 SER A 8 LEU A 21 1 14 HELIX 2 2 SER A 24 SER A 33 1 10 HELIX 3 3 SER A 35 ASP A 45 1 11 HELIX 4 4 PRO A 46 TYR A 49 5 4 HELIX 5 5 SER A 62 SER A 76 1 15 HELIX 6 6 THR A 79 LEU A 87 1 9 HELIX 7 7 SER A 92 SER A 103 1 12 CRYST1 93.681 93.681 255.558 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010675 0.006163 0.000000 0.00000 SCALE2 0.000000 0.012326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003913 0.00000