PDB Short entry for 1UBX HEADER TRANSFERASE 14-OCT-96 1UBX TITLE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPS; COMPND 5 EC: 2.5.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH FARNESYL DIPHOSPHATE AND MAGNESIUM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUC KEYWDS TRANSFERASE, ISOPRENE BIOSYNTHESIS, CHOLESTEROL BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.C.TARSHIS,P.PROTEAU,C.D.POULTER,J.C.SACCHETTINI REVDAT 3 13-JUL-11 1UBX 1 VERSN REVDAT 2 24-FEB-09 1UBX 1 VERSN REVDAT 1 12-MAR-97 1UBX 0 JRNL AUTH L.C.TARSHIS,P.J.PROTEAU,B.A.KELLOGG,J.C.SACCHETTINI, JRNL AUTH 2 C.D.POULTER JRNL TITL REGULATION OF PRODUCT CHAIN LENGTH BY ISOPRENYL DIPHOSPHATE JRNL TITL 2 SYNTHASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 15018 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8986756 JRNL DOI 10.1073/PNAS.93.26.15018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.C.TARSHIS,M.YAN,C.D.POULTER,J.C.SACCHETTINI REMARK 1 TITL CRYSTAL STRUCTURE OF RECOMBINANT FARNESYL DIPHOSPHATE REMARK 1 TITL 2 SYNTHASE AT 2.6-A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 33 10871 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 5-E REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16544 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2010 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.540 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SADIE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19491 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.07500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 207.22500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 207.22500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.07500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.15000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 138.15000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 207.22500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 69.07500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 69.07500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 207.22500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 138.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 ARG A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 152 O HOH A 407 2.18 REMARK 500 O GLN A 340 OE1 GLU A 344 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CG GLU A 25 CD 0.101 REMARK 500 GLU A 136 CG GLU A 136 CD 0.110 REMARK 500 GLN A 176 CG GLN A 176 CD 0.146 REMARK 500 LYS A 361 CD LYS A 361 CE 0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 38 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU A 63 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 LEU A 76 CB - CG - CD1 ANGL. DEV. = -16.2 DEGREES REMARK 500 PRO A 88 C - N - CD ANGL. DEV. = -18.7 DEGREES REMARK 500 LEU A 108 CB - CG - CD2 ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU A 130 CB - CG - CD2 ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU A 140 CA - CB - CG ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 171 CB - CG - CD1 ANGL. DEV. = -14.5 DEGREES REMARK 500 PRO A 193 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 VAL A 231 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU A 246 CB - CG - CD2 ANGL. DEV. = 12.3 DEGREES REMARK 500 GLY A 270 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 ILE A 276 CG1 - CB - CG2 ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU A 284 CB - CG - CD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 CYS A 288 CA - CB - SG ANGL. DEV. = 11.1 DEGREES REMARK 500 PRO A 309 C - N - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU A 342 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 342 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 35.47 -87.85 REMARK 500 VAL A 22 -76.28 -147.40 REMARK 500 THR A 43 -12.60 -163.29 REMARK 500 ILE A 47 93.64 -56.26 REMARK 500 PRO A 50 13.30 -59.50 REMARK 500 GLU A 51 -58.13 -123.04 REMARK 500 CYS A 72 3.29 82.59 REMARK 500 GLN A 90 35.70 -92.33 REMARK 500 ALA A 93 -57.81 -23.16 REMARK 500 ARG A 127 46.00 22.53 REMARK 500 GLU A 136 152.47 -34.12 REMARK 500 VAL A 138 -83.11 -100.73 REMARK 500 ARG A 162 -33.24 -33.08 REMARK 500 GLN A 163 57.61 -108.74 REMARK 500 TYR A 167 -77.13 -32.29 REMARK 500 VAL A 197 -65.61 44.79 REMARK 500 ASP A 198 141.88 52.19 REMARK 500 SER A 200 -72.21 -77.30 REMARK 500 HIS A 201 45.45 -81.51 REMARK 500 PHE A 202 76.03 -108.21 REMARK 500 LYS A 208 -6.27 -57.23 REMARK 500 THR A 215 -33.39 -141.19 REMARK 500 ILE A 233 92.19 -57.30 REMARK 500 LEU A 260 18.60 -60.26 REMARK 500 ASP A 265 -45.30 -147.21 REMARK 500 PRO A 266 96.41 -42.00 REMARK 500 ALA A 267 7.07 83.72 REMARK 500 THR A 274 167.93 164.48 REMARK 500 ILE A 276 -35.83 151.27 REMARK 500 ASN A 279 25.58 -55.87 REMARK 500 LEU A 289 21.41 -68.90 REMARK 500 GLN A 290 16.24 -157.96 REMARK 500 ASP A 302 -63.40 -98.44 REMARK 500 PRO A 309 -35.40 -21.32 REMARK 500 GLU A 310 -70.15 -71.13 REMARK 500 LYS A 311 -81.12 -34.48 REMARK 500 ALA A 326 -70.70 -67.90 REMARK 500 GLN A 330 2.95 -69.06 REMARK 500 TYR A 331 -80.13 -96.94 REMARK 500 ARG A 337 -75.11 -58.57 REMARK 500 LYS A 345 -4.97 -162.33 REMARK 500 SER A 347 37.63 -96.60 REMARK 500 ARG A 349 -7.15 134.62 REMARK 500 ALA A 359 -72.39 -51.83 REMARK 500 GLN A 360 -12.94 -41.00 REMARK 500 ARG A 365 172.95 59.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 133 0.08 SIDE CHAIN REMARK 500 TYR A 221 0.07 SIDE CHAIN REMARK 500 TYR A 252 0.07 SIDE CHAIN REMARK 500 PHE A 263 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 28 -13.90 REMARK 500 ALA A 80 -10.28 REMARK 500 CYS A 98 12.23 REMARK 500 VAL A 102 -13.65 REMARK 500 ALA A 112 -13.59 REMARK 500 VAL A 115 -10.30 REMARK 500 ARG A 126 -14.23 REMARK 500 LYS A 135 12.25 REMARK 500 LEU A 149 -10.77 REMARK 500 TYR A 179 14.43 REMARK 500 ALA A 225 12.96 REMARK 500 GLN A 340 -12.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 29 21.9 L L OUTSIDE RANGE REMARK 500 ASN A 66 21.6 L L OUTSIDE RANGE REMARK 500 LEU A 114 19.9 L L OUTSIDE RANGE REMARK 500 ASP A 198 19.8 L L OUTSIDE RANGE REMARK 500 HIS A 201 24.6 L L OUTSIDE RANGE REMARK 500 ASP A 258 22.8 L L OUTSIDE RANGE REMARK 500 PHE A 263 22.3 L L OUTSIDE RANGE REMARK 500 ASP A 275 17.8 L L OUTSIDE RANGE REMARK 500 MET A 324 22.9 L L OUTSIDE RANGE REMARK 500 GLN A 340 24.2 L L OUTSIDE RANGE REMARK 500 SER A 347 22.6 L L OUTSIDE RANGE REMARK 500 LYS A 364 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 410 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 5.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 ASP A 121 OD2 78.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP A 401 DBREF 1UBX A 1 367 UNP P08836 FPPS_CHICK 1 367 SEQADV 1UBX ALA A 112 UNP P08836 PHE 112 CONFLICT SEQADV 1UBX SER A 113 UNP P08836 PHE 113 CONFLICT SEQRES 1 A 367 MET HIS LYS PHE THR GLY VAL ASN ALA LYS PHE GLN GLN SEQRES 2 A 367 PRO ALA LEU ARG ASN LEU SER PRO VAL VAL VAL GLU ARG SEQRES 3 A 367 GLU ARG GLU GLU PHE VAL GLY PHE PHE PRO GLN ILE VAL SEQRES 4 A 367 ARG ASP LEU THR GLU ASP GLY ILE GLY HIS PRO GLU VAL SEQRES 5 A 367 GLY ASP ALA VAL ALA ARG LEU LYS GLU VAL LEU GLN TYR SEQRES 6 A 367 ASN ALA PRO GLY GLY LYS CYS ASN ARG GLY LEU THR VAL SEQRES 7 A 367 VAL ALA ALA TYR ARG GLU LEU SER GLY PRO GLY GLN LYS SEQRES 8 A 367 ASP ALA GLU SER LEU ARG CYS ALA LEU ALA VAL GLY TRP SEQRES 9 A 367 CYS ILE GLU LEU PHE GLN ALA ALA SER LEU VAL ALA ASP SEQRES 10 A 367 ASP ILE MET ASP GLN SER LEU THR ARG ARG GLY GLN LEU SEQRES 11 A 367 CYS TRP TYR LYS LYS GLU GLY VAL GLY LEU ASP ALA ILE SEQRES 12 A 367 ASN ASP SER PHE LEU LEU GLU SER SER VAL TYR ARG VAL SEQRES 13 A 367 LEU LYS LYS TYR CYS ARG GLN ARG PRO TYR TYR VAL HIS SEQRES 14 A 367 LEU LEU GLU LEU PHE LEU GLN THR ALA TYR GLN THR GLU SEQRES 15 A 367 LEU GLY GLN MET LEU ASP LEU ILE THR ALA PRO VAL SER SEQRES 16 A 367 LYS VAL ASP LEU SER HIS PHE SER GLU GLU ARG TYR LYS SEQRES 17 A 367 ALA ILE VAL LYS TYR LYS THR ALA PHE TYR SER PHE TYR SEQRES 18 A 367 LEU PRO VAL ALA ALA ALA MET TYR MET VAL GLY ILE ASP SEQRES 19 A 367 SER LYS GLU GLU HIS GLU ASN ALA LYS ALA ILE LEU LEU SEQRES 20 A 367 GLU MET GLY GLU TYR PHE GLN ILE GLN ASP ASP TYR LEU SEQRES 21 A 367 ASP CYS PHE GLY ASP PRO ALA LEU THR GLY LYS VAL GLY SEQRES 22 A 367 THR ASP ILE GLN ASP ASN LYS CYS SER TRP LEU VAL VAL SEQRES 23 A 367 GLN CYS LEU GLN ARG VAL THR PRO GLU GLN ARG GLN LEU SEQRES 24 A 367 LEU GLU ASP ASN TYR GLY ARG LYS GLU PRO GLU LYS VAL SEQRES 25 A 367 ALA LYS VAL LYS GLU LEU TYR GLU ALA VAL GLY MET ARG SEQRES 26 A 367 ALA ALA PHE GLN GLN TYR GLU GLU SER SER TYR ARG ARG SEQRES 27 A 367 LEU GLN GLU LEU ILE GLU LYS HIS SER ASN ARG LEU PRO SEQRES 28 A 367 LYS GLU ILE PHE LEU GLY LEU ALA GLN LYS ILE TYR LYS SEQRES 29 A 367 ARG GLN LYS HET MG A 402 1 HET FPP A 401 24 HETNAM MG MAGNESIUM ION HETNAM FPP FARNESYL DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 FPP C15 H28 O7 P2 FORMUL 4 HOH *45(H2 O) HELIX 1 1 VAL A 23 ASP A 41 1 19 HELIX 2 2 GLY A 53 ASN A 66 1 14 HELIX 3 3 ASN A 73 LEU A 85 1 13 HELIX 4 4 PRO A 88 GLN A 90 5 3 HELIX 5 5 ALA A 93 ASP A 121 1 29 HELIX 6 6 GLY A 139 CYS A 161 5 23 HELIX 7 7 TYR A 167 THR A 191 1 25 HELIX 8 8 GLU A 204 LYS A 214 1 11 HELIX 9 9 ALA A 216 SER A 219 1 4 HELIX 10 10 TYR A 221 VAL A 231 1 11 HELIX 11 11 LYS A 236 TYR A 259 1 24 HELIX 12 12 TRP A 283 GLN A 290 1 8 HELIX 13 13 PRO A 294 ASN A 303 1 10 HELIX 14 14 VAL A 312 VAL A 322 1 11 HELIX 15 15 MET A 324 LYS A 345 1 22 HELIX 16 16 LYS A 352 ILE A 362 1 11 SHEET 1 A 2 THR A 125 ARG A 126 0 SHEET 2 A 2 GLN A 129 LEU A 130 -1 O GLN A 129 N ARG A 126 LINK MG MG A 402 OD2 ASP A 117 1555 1555 2.67 LINK MG MG A 402 OD2 ASP A 121 1555 1555 3.02 SITE 1 AC1 4 ASP A 117 ASP A 121 SER A 123 FPP A 401 SITE 1 AC2 12 PHE A 109 SER A 113 ALA A 116 ASP A 117 SITE 2 AC2 12 MET A 120 ASP A 121 ARG A 126 ASN A 144 SITE 3 AC2 12 GLU A 182 GLN A 185 LYS A 214 MG A 402 CRYST1 88.700 88.700 276.300 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003619 0.00000