PDB Short entry for 1UEL HEADER GENE REGULATION/PROTEIN BINDING 19-MAY-03 1UEL TITLE SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH TITLE 2 UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN (RESIDUES 1-95); COMPND 5 SYNONYM: HHR23B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UBIQUITIN-INTERACTING MOTIF (RESIDUES 201-248); COMPND 11 SYNONYM: S5A, 26S PROTEASOME REGULATORY SUBUNIT S5A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS UBL, UIM, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS, GENE REGULATION-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.FUJIWARA,T.TENNO,J.G.JEE,K.SUGASAWA,I.OHKI,C.KOJIMA,H.TOCHIO, AUTHOR 2 H.HIROAKI,H.HANAOKA,M.SHIRAKAWA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UEL 1 REMARK REVDAT 3 02-MAR-22 1UEL 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UEL 1 VERSN REVDAT 1 10-FEB-04 1UEL 0 JRNL AUTH K.FUJIWARA,T.TENNO,K.SUGASAWA,J.G.JEE,I.OHKI,C.KOJIMA, JRNL AUTH 2 H.TOCHIO,H.HIROAKI,F.HANAOKA,M.SHIRAKAWA JRNL TITL STRUCTURE OF THE UBIQUITIN-INTERACTING MOTIF OF S5A BOUND TO JRNL TITL 2 THE UBIQUITIN-LIKE DOMAIN OF HR23B JRNL REF J.BIOL.CHEM. V. 279 4760 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14585839 JRNL DOI 10.1074/JBC.M309448200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES INCLUDING MET1 THROUGH THR75 OF HHR23B AND REMARK 3 LEU278 THROUGH GLN 296 OF S5A ARE ORDERED IN SOLUTION, REMARK 3 WHILE THE REST IS HIGHLY FLEXIBLE REMARK 3 (BASED ON 1H-15N HETERONUCLEAR NOE ANALYSIS). REMARK 4 REMARK 4 1UEL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005736. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : U-15N, U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING PROCEDURE IN REMARK 210 CNS AND FURTHER REFINED BY AMBER REMARK 210 7 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THE 20 STRUCTURES WITH THE REMARK 210 LOWEST REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 15 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 76 -96.08 52.73 REMARK 500 1 PRO A 85 93.60 -55.74 REMARK 500 1 HIS A 90 -43.05 -135.13 REMARK 500 1 HIS A 91 22.75 45.41 REMARK 500 1 THR B 264 -11.59 54.41 REMARK 500 1 LEU B 278 -8.66 68.79 REMARK 500 1 ALA B 298 1.82 -68.89 REMARK 500 1 GLU B 299 17.74 86.09 REMARK 500 1 SER B 305 94.01 -68.32 REMARK 500 2 LYS A 76 80.01 23.84 REMARK 500 2 VAL A 80 56.58 39.16 REMARK 500 2 ALA A 84 -66.62 -147.65 REMARK 500 2 ALA B 298 -131.50 -100.20 REMARK 500 2 SER B 305 0.79 58.60 REMARK 500 3 ALA A 84 73.80 -119.58 REMARK 500 3 HIS B 262 -35.38 49.55 REMARK 500 3 ASP B 277 49.78 -82.93 REMARK 500 3 LEU B 278 -5.18 61.75 REMARK 500 3 ALA B 298 -73.56 -85.56 REMARK 500 4 THR A 22 174.03 82.17 REMARK 500 4 ALA A 79 -158.50 47.93 REMARK 500 4 ALA A 86 99.36 -68.94 REMARK 500 4 LEU A 88 14.63 55.84 REMARK 500 4 HIS A 92 0.55 -69.01 REMARK 500 4 THR B 273 -63.51 -127.95 REMARK 500 4 ASP B 277 45.77 -79.23 REMARK 500 4 ALA B 298 20.07 -74.89 REMARK 500 5 ALA A 49 25.74 49.87 REMARK 500 5 LYS A 76 -37.20 -131.91 REMARK 500 5 PRO A 77 170.52 -57.70 REMARK 500 5 LYS A 78 7.53 47.46 REMARK 500 5 PRO A 83 40.35 -77.00 REMARK 500 5 ALA A 86 -62.07 -143.28 REMARK 500 5 HIS A 93 -56.98 50.33 REMARK 500 5 HIS A 94 90.91 -68.17 REMARK 500 5 SER B 266 -159.74 -134.79 REMARK 500 5 GLN B 268 -49.14 62.56 REMARK 500 5 PRO B 276 171.75 -56.58 REMARK 500 5 ALA B 298 30.76 -74.24 REMARK 500 5 PHE B 300 6.01 59.83 REMARK 500 6 THR A 22 174.14 87.02 REMARK 500 6 VAL A 80 -12.64 49.35 REMARK 500 6 PRO A 85 97.94 -68.86 REMARK 500 6 ALA A 86 -173.19 54.89 REMARK 500 6 THR B 273 -66.10 -130.40 REMARK 500 6 LEU B 278 -10.86 62.89 REMARK 500 6 PHE B 300 19.47 51.59 REMARK 500 7 ALA A 49 25.45 49.97 REMARK 500 7 VAL A 80 87.94 65.10 REMARK 500 7 HIS A 90 168.09 61.74 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TRT001000364.1 RELATED DB: TARGETDB DBREF 1UEL A 1 87 UNP P54727 RD23B_HUMAN 1 87 DBREF 1UEL B 263 307 UNP P55036 PSD4_HUMAN 263 307 SEQADV 1UEL LEU A 88 UNP P54727 EXPRESSION TAG SEQADV 1UEL GLU A 89 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 90 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 91 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 92 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 93 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 94 UNP P54727 EXPRESSION TAG SEQADV 1UEL HIS A 95 UNP P54727 EXPRESSION TAG SEQADV 1UEL GLY B 260 UNP P55036 CLONING ARTIFACT SEQADV 1UEL SER B 261 UNP P55036 CLONING ARTIFACT SEQADV 1UEL HIS B 262 UNP P55036 CLONING ARTIFACT SEQRES 1 A 95 MET GLN VAL THR LEU LYS THR LEU GLN GLN GLN THR PHE SEQRES 2 A 95 LYS ILE ASP ILE ASP PRO GLU GLU THR VAL LYS ALA LEU SEQRES 3 A 95 LYS GLU LYS ILE GLU SER GLU LYS GLY LYS ASP ALA PHE SEQRES 4 A 95 PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY LYS ILE SEQRES 5 A 95 LEU ASN ASP ASP THR ALA LEU LYS GLU TYR LYS ILE ASP SEQRES 6 A 95 GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS PRO LYS SEQRES 7 A 95 ALA VAL SER THR PRO ALA PRO ALA THR LEU GLU HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS SEQRES 1 B 48 GLY SER HIS MET THR ILE SER GLN GLN GLU PHE GLY ARG SEQRES 2 B 48 THR GLY LEU PRO ASP LEU SER SER MET THR GLU GLU GLU SEQRES 3 B 48 GLN ILE ALA TYR ALA MET GLN MET SER LEU GLN GLY ALA SEQRES 4 B 48 GLU PHE GLY GLN ALA GLU SER ALA ASP HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 ALA A 58 LYS A 63 5 6 HELIX 3 3 PRO A 85 HIS A 90 5 6 HELIX 4 4 THR B 282 ALA B 298 1 17 SHEET 1 A 5 THR A 12 ASP A 16 0 SHEET 2 A 5 GLN A 2 THR A 7 -1 N VAL A 3 O ILE A 15 SHEET 3 A 5 PHE A 69 VAL A 74 1 O VAL A 70 N THR A 4 SHEET 4 A 5 GLN A 44 TYR A 48 -1 N ILE A 47 O VAL A 71 SHEET 5 A 5 LYS A 51 ILE A 52 -1 O LYS A 51 N TYR A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000