PDB Short entry for 1UHL HEADER DNA BINDING PROTEIN 03-JUL-03 1UHL TITLE CRYSTAL STRUCTURE OF THE LXRALFA-RXRBETA LBD HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 298-533; COMPND 5 SYNONYM: RETINOID X RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OXYSTEROLS RECEPTOR LXR-ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 206-447; COMPND 11 SYNONYM: LIVER X RECEPTOR ALPHA, NUCLEAR ORPHAN RECEPTOR LXR-ALPHA; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 10-MER PEPTIDE FROM NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 15 CHAIN: C, D; COMPND 16 SYNONYM: NCOA-2, TRANSCRIPTIONAL INTERMEDIARY FACTOR 2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS LIGAND-BINDING DOMAIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SVENSSON,T.OSTBERG,M.JACOBSSON,C.NORSTROM,K.STEFANSSON,D.HALLEN, AUTHOR 2 I.C.JOHANSSON,K.ZACHRISSON,D.OGG,L.JENDEBERG REVDAT 4 25-OCT-23 1UHL 1 REMARK SEQADV REVDAT 3 23-MAY-18 1UHL 1 REMARK REVDAT 2 24-FEB-09 1UHL 1 VERSN REVDAT 1 01-JUN-04 1UHL 0 JRNL AUTH S.SVENSSON,T.OSTBERG,M.JACOBSSON,C.NORSTROM,K.STEFANSSON, JRNL AUTH 2 D.HALLEN,I.C.JOHANSSON,K.ZACHRISSON,D.OGG,L.JENDEBERG JRNL TITL CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF LXRALPHA JRNL TITL 2 AND RXRBETA LIGAND-BINDING DOMAINS IN A FULLY AGONISTIC JRNL TITL 3 CONFORMATION JRNL REF EMBO J. V. 22 4625 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12970175 JRNL DOI 10.1093/EMBOJ/CDG456 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 839 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.5590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.537 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.369 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.795 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3762 ; 0.029 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5082 ; 2.776 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ;10.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.194 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2787 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2012 ; 0.298 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2259 ; 1.016 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3644 ; 1.930 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1503 ; 3.080 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1438 ; 5.085 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000005835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DKF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 305K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.81700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.39750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.49800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.39750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.81700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.49800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 314 REMARK 465 SER A 315 REMARK 465 ASP A 316 REMARK 465 GLN A 317 REMARK 465 GLY A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 GLY A 321 REMARK 465 PRO A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 THR A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 SER A 330 REMARK 465 PRO A 529 REMARK 465 HIS A 530 REMARK 465 GLN A 531 REMARK 465 LEU A 532 REMARK 465 ALA A 533 REMARK 465 SER B 230 REMARK 465 ASP B 231 REMARK 465 ARG B 232 REMARK 465 LEU B 233 REMARK 465 ARG B 234 REMARK 465 VAL B 235 REMARK 465 THR B 236 REMARK 465 PRO B 237 REMARK 465 TRP B 238 REMARK 465 PRO B 239 REMARK 465 MET B 240 REMARK 465 ALA B 241 REMARK 465 PRO B 242 REMARK 465 ASP B 243 REMARK 465 PRO B 244 REMARK 465 HIS B 245 REMARK 465 SER B 246 REMARK 465 ARG B 247 REMARK 465 PHE B 315 REMARK 465 LEU B 316 REMARK 465 LYS B 317 REMARK 465 HIS B 446 REMARK 465 GLU B 447 REMARK 465 ASP C 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 331 N VAL B 333 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 465 CD GLU A 465 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 344 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 367 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 387 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 390 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU A 421 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 429 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 429 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 432 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 491 CA - CB - CG ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG A 492 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 492 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 504 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU B 211 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 304 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 325 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 344 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP B 353 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 VAL B 372 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 LEU B 430 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 ASP B 444 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 LYS D 605 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 344 -35.94 -37.48 REMARK 500 PRO A 358 108.57 -42.25 REMARK 500 HIS A 359 -14.32 108.58 REMARK 500 SER A 361 -44.70 -17.37 REMARK 500 PRO A 364 142.65 -38.26 REMARK 500 ASP A 393 75.93 24.36 REMARK 500 ASN A 456 66.64 -152.86 REMARK 500 TYR A 468 -39.72 -38.53 REMARK 500 GLU A 472 -76.48 -46.13 REMARK 500 THR A 473 -56.68 -18.63 REMARK 500 GLN A 477 -84.38 -67.72 REMARK 500 LEU A 491 -2.77 -59.33 REMARK 500 THR A 520 -82.22 4.55 REMARK 500 GLU B 209 -71.24 -41.94 REMARK 500 GLN B 222 25.34 -60.15 REMARK 500 GLN B 223 -43.68 -154.06 REMARK 500 ASN B 225 14.92 -47.61 REMARK 500 ARG B 226 75.43 177.32 REMARK 500 GLN B 252 -31.89 -7.94 REMARK 500 PHE B 254 -71.40 -42.09 REMARK 500 ALA B 255 -18.06 -43.66 REMARK 500 PRO B 276 106.30 -42.77 REMARK 500 GLN B 280 -72.45 -39.12 REMARK 500 LEU B 281 139.49 -36.51 REMARK 500 SER B 282 119.38 -28.15 REMARK 500 ARG B 304 -163.94 -68.24 REMARK 500 GLU B 311 39.15 29.36 REMARK 500 ALA B 327 -8.03 -55.14 REMARK 500 ALA B 329 -176.02 -58.56 REMARK 500 GLN B 332 26.10 12.76 REMARK 500 GLU B 334 67.99 -100.77 REMARK 500 LEU B 351 163.15 -49.33 REMARK 500 SER B 363 -39.60 -37.37 REMARK 500 ASN B 371 107.00 19.67 REMARK 500 GLN B 373 -74.66 -45.48 REMARK 500 GLU B 379 -8.65 -54.27 REMARK 500 HIS B 397 61.37 -116.90 REMARK 500 LYS B 433 -52.16 -139.23 REMARK 500 LYS B 434 -29.36 38.15 REMARK 500 LEU B 435 -105.58 -10.78 REMARK 500 PRO B 437 -55.86 -20.33 REMARK 500 TRP B 443 30.83 -84.28 REMARK 500 ASP B 444 74.79 -4.38 REMARK 500 LYS C 605 -62.39 150.26 REMARK 500 LYS D 605 -86.38 156.55 REMARK 500 LEU D 611 -89.94 -82.88 REMARK 500 GLN D 612 109.97 -44.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 226 ARG B 227 121.88 REMARK 500 GLU B 334 PHE B 335 125.23 REMARK 500 GLN B 431 ASP B 432 -37.90 REMARK 500 LYS B 434 LEU B 435 -135.90 REMARK 500 LEU B 435 PRO B 436 -136.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 444 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEI A 1001 DBREF 1UHL A 298 533 UNP P28702 RXRB_HUMAN 298 533 DBREF 1UHL B 207 447 UNP Q13133 NR1H3_HUMAN 207 447 DBREF 1UHL C 604 613 UNP Q15596 NCOA2_HUMAN 687 696 DBREF 1UHL D 604 613 UNP Q15596 NCOA2_HUMAN 687 696 SEQADV 1UHL MET B 206 UNP Q13133 EXPRESSION TAG SEQRES 1 A 236 GLU MET PRO VAL ASP ARG ILE LEU GLU ALA GLU LEU ALA SEQRES 2 A 236 VAL GLU GLN LYS SER ASP GLN GLY VAL GLU GLY PRO GLY SEQRES 3 A 236 GLY THR GLY GLY SER GLY SER SER PRO ASN ASP PRO VAL SEQRES 4 A 236 THR ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR SEQRES 5 A 236 LEU VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER SER SEQRES 6 A 236 LEU PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY SEQRES 7 A 236 TRP ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER SEQRES 8 A 236 ILE ASP VAL ARG ASP GLY ILE LEU LEU ALA THR GLY LEU SEQRES 9 A 236 HIS VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY SEQRES 10 A 236 ALA ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS SEQRES 11 A 236 MET ARG ASP MET ARG MET ASP LYS THR GLU LEU GLY CYS SEQRES 12 A 236 LEU ARG ALA ILE ILE LEU PHE ASN PRO ASP ALA LYS GLY SEQRES 13 A 236 LEU SER ASN PRO SER GLU VAL GLU VAL LEU ARG GLU LYS SEQRES 14 A 236 VAL TYR ALA SER LEU GLU THR TYR CYS LYS GLN LYS TYR SEQRES 15 A 236 PRO GLU GLN GLN GLY ARG PHE ALA LYS LEU LEU LEU ARG SEQRES 16 A 236 LEU PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU SEQRES 17 A 236 HIS LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE SEQRES 18 A 236 ASP THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN SEQRES 19 A 236 LEU ALA SEQRES 1 B 242 MET SER PRO GLU GLN LEU GLY MET ILE GLU LYS LEU VAL SEQRES 2 B 242 ALA ALA GLN GLN GLN CYS ASN ARG ARG SER PHE SER ASP SEQRES 3 B 242 ARG LEU ARG VAL THR PRO TRP PRO MET ALA PRO ASP PRO SEQRES 4 B 242 HIS SER ARG GLU ALA ARG GLN GLN ARG PHE ALA HIS PHE SEQRES 5 B 242 THR GLU LEU ALA ILE VAL SER VAL GLN GLU ILE VAL ASP SEQRES 6 B 242 PHE ALA LYS GLN LEU PRO GLY PHE LEU GLN LEU SER ARG SEQRES 7 B 242 GLU ASP GLN ILE ALA LEU LEU LYS THR SER ALA ILE GLU SEQRES 8 B 242 VAL MET LEU LEU GLU THR SER ARG ARG TYR ASN PRO GLY SEQRES 9 B 242 SER GLU SER ILE THR PHE LEU LYS ASP PHE SER TYR ASN SEQRES 10 B 242 ARG GLU ASP PHE ALA LYS ALA GLY LEU GLN VAL GLU PHE SEQRES 11 B 242 ILE ASN PRO ILE PHE GLU PHE SER ARG ALA MET ASN GLU SEQRES 12 B 242 LEU GLN LEU ASN ASP ALA GLU PHE ALA LEU LEU ILE ALA SEQRES 13 B 242 ILE SER ILE PHE SER ALA ASP ARG PRO ASN VAL GLN ASP SEQRES 14 B 242 GLN LEU GLN VAL GLU ARG LEU GLN HIS THR TYR VAL GLU SEQRES 15 B 242 ALA LEU HIS ALA TYR VAL SER ILE HIS HIS PRO HIS ASP SEQRES 16 B 242 ARG LEU MET PHE PRO ARG MET LEU MET LYS LEU VAL SER SEQRES 17 B 242 LEU ARG THR LEU SER SER VAL HIS SER GLU GLN VAL PHE SEQRES 18 B 242 ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO PRO LEU LEU SEQRES 19 B 242 SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 C 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 1 D 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP HET MEI A1001 19 HET 444 B1002 31 HETNAM MEI (2E,4E)-11-METHOXY-3,7,11-TRIMETHYLDODECA-2,4-DIENOIC HETNAM 2 MEI ACID HETNAM 444 N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1- HETNAM 2 444 HYDROXY-1-(TRIFLUOROMETHYL) HETNAM 3 444 ETHYL]PHENYL}BENZENESULFONAMIDE HETSYN MEI METOPRENIC ACID FORMUL 5 MEI C16 H28 O3 FORMUL 6 444 C17 H12 F9 N O3 S FORMUL 7 HOH *12(H2 O) HELIX 1 1 PRO A 300 VAL A 311 1 12 HELIX 2 2 ASP A 334 ARG A 356 1 23 HELIX 3 3 HIS A 359 LEU A 363 5 5 HELIX 4 4 PRO A 364 ARG A 387 1 24 HELIX 5 5 ARG A 405 GLY A 412 1 8 HELIX 6 6 VAL A 413 LEU A 424 1 12 HELIX 7 7 LEU A 424 MET A 431 1 8 HELIX 8 8 ASP A 434 PHE A 447 1 14 HELIX 9 9 ASN A 456 TYR A 479 1 24 HELIX 10 10 GLY A 484 GLY A 514 1 31 HELIX 11 11 ASP A 519 LEU A 526 1 8 HELIX 12 12 SER B 207 ASN B 225 1 19 HELIX 13 13 GLN B 252 LEU B 275 1 24 HELIX 14 14 SER B 282 ARG B 304 1 23 HELIX 15 15 ASN B 322 ALA B 327 1 6 HELIX 16 16 PHE B 335 GLN B 350 1 16 HELIX 17 17 ASN B 352 PHE B 365 1 14 HELIX 18 18 ASP B 374 HIS B 397 1 24 HELIX 19 19 LEU B 402 MET B 409 1 8 HELIX 20 20 MET B 409 LEU B 430 1 22 HELIX 21 21 PRO B 436 TRP B 443 1 8 HELIX 22 22 LYS C 605 GLN C 612 1 8 HELIX 23 23 LYS D 605 GLN D 612 1 8 SHEET 1 A 2 GLY A 394 LEU A 396 0 SHEET 2 A 2 HIS A 402 HIS A 404 -1 O VAL A 403 N ILE A 395 SHEET 1 B 2 TYR B 306 ASN B 307 0 SHEET 2 B 2 SER B 312 ILE B 313 -1 O SER B 312 N ASN B 307 SITE 1 AC1 10 ALA B 261 SER B 264 MET B 298 LEU B 299 SITE 2 AC1 10 THR B 302 LEU B 331 ILE B 339 HIS B 421 SITE 3 AC1 10 GLN B 424 LEU B 439 SITE 1 AC2 10 ILE A 339 ALA A 342 ALA A 343 LEU A 380 SITE 2 AC2 10 PHE A 384 ARG A 387 ALA A 398 VAL A 413 SITE 3 AC2 10 CYS A 503 LEU A 507 CRYST1 67.634 88.996 90.795 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014785 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011014 0.00000